Wall clock time and date at job start Tue Mar 31 2020 19:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47347 * 2 1 4 4 N 1.46500 * 109.47184 * 180.02562 * 3 2 1 5 5 C 1.34777 * 119.99749 * 263.33560 * 4 3 2 6 6 O 1.21288 * 119.99463 * 185.00778 * 5 4 3 7 7 C 1.50694 * 120.00198 * 5.00988 * 5 4 3 8 8 H 1.08994 * 109.46981 * 39.83981 * 7 5 4 9 9 C 1.53003 * 109.47184 * 279.83672 * 7 5 4 10 10 N 1.46499 * 109.47205 * 159.83678 * 7 5 4 11 11 C 1.34434 * 126.82211 * 84.71023 * 10 7 5 12 12 N 1.30834 * 108.07593 * 179.89550 * 11 10 7 13 13 C 1.33240 * 109.82864 * 0.37893 * 12 11 10 14 14 N 1.30714 * 108.94907 * 359.76838 * 13 12 11 15 15 C 1.46499 * 120.00277 * 83.33234 * 4 3 2 16 16 C 1.53037 * 109.46624 * 240.07208 * 15 4 3 17 17 C 1.53186 * 109.31663 * 178.61612 * 16 15 4 18 18 N 1.46927 * 108.77568 * 54.63262 * 17 16 15 19 19 C 1.36937 * 120.62998 * 126.41959 * 18 17 16 20 20 H 1.08008 * 119.99751 * 330.25517 * 19 18 17 21 21 C 1.38811 * 120.00133 * 150.26201 * 19 18 17 22 22 N 1.31619 * 120.00065 * 343.75254 * 21 19 18 23 23 Si 1.86801 * 120.00133 * 163.75734 * 21 19 18 24 24 H 1.48505 * 109.47038 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47223 * 119.99594 * 23 21 19 26 26 H 1.48498 * 109.47229 * 240.00266 * 23 21 19 27 27 C 1.46921 * 118.73969 * 306.39042 * 18 17 16 28 28 C 1.53046 * 109.45989 * 120.00130 * 15 4 3 29 29 H 1.09003 * 109.47528 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46861 * 299.99745 * 1 2 3 31 31 H 1.08996 * 109.47548 * 59.99912 * 1 2 3 32 32 H 1.09009 * 109.46697 * 239.99652 * 2 1 3 33 33 H 1.09007 * 109.47110 * 120.00655 * 2 1 3 34 34 H 1.08992 * 109.47238 * 60.00204 * 3 2 1 35 35 H 1.09002 * 109.46900 * 300.00096 * 3 2 1 36 36 H 1.09004 * 109.46862 * 48.88626 * 9 7 5 37 37 H 1.08994 * 109.46936 * 168.88532 * 9 7 5 38 38 H 1.08997 * 109.47164 * 288.88738 * 9 7 5 39 39 H 1.08000 * 125.95933 * 0.03902 * 11 10 7 40 40 H 1.08007 * 125.52287 * 179.80034 * 13 12 11 41 41 H 1.08998 * 109.44733 * 0.04031 * 15 4 3 42 42 H 1.09008 * 109.49253 * 298.56417 * 16 15 4 43 43 H 1.09003 * 109.49644 * 58.65657 * 16 15 4 44 44 H 1.09006 * 109.58554 * 294.84412 * 17 16 15 45 45 H 1.09000 * 109.70630 * 174.48975 * 17 16 15 46 46 H 0.96994 * 120.00231 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.59095 * 293.82765 * 27 18 17 48 48 H 1.08993 * 109.70491 * 173.46689 * 27 18 17 49 49 H 1.09003 * 109.49508 * 301.33658 * 28 15 4 50 50 H 1.08995 * 109.49466 * 61.43412 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1793 1.5776 1.1585 6 8 5.3887 1.6689 1.1493 7 6 3.4307 1.6154 2.4658 8 1 2.6178 0.8898 2.4400 9 6 2.8568 3.0168 2.6845 10 7 4.3451 1.2857 3.5618 11 6 5.1654 2.1316 4.2089 12 7 5.8130 1.4518 5.1200 13 6 5.4407 0.1731 5.0796 14 7 4.5434 0.0218 4.1413 15 6 4.2370 1.2952 -1.2611 16 6 5.1154 0.0437 -1.1976 17 6 5.8528 -0.1260 -2.5295 18 7 6.5868 1.1121 -2.8247 19 6 7.9283 1.0796 -3.0980 20 1 8.5500 0.3124 -2.6605 21 6 8.4889 2.0326 -3.9372 22 7 7.7164 2.7599 -4.7160 23 14 10.3399 2.2830 -3.9611 24 1 10.9785 1.3472 -3.0010 25 1 10.8575 2.0186 -5.3276 26 1 10.6554 3.6815 -3.5742 27 6 5.8541 2.3856 -2.8219 28 6 5.1168 2.5271 -1.4865 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 1.6768 1.9562 0.8899 35 1 1.6766 1.9562 -0.8900 36 1 2.3374 3.3415 1.7828 37 1 2.1567 2.9963 3.5197 38 1 3.6674 3.7108 2.9067 39 1 5.2697 3.1885 4.0125 40 1 5.8187 -0.6110 5.7189 41 1 3.5281 1.1999 -2.0835 42 1 5.8410 0.1491 -0.3909 43 1 4.4906 -0.8303 -1.0136 44 1 5.1323 -0.3219 -3.3237 45 1 6.5534 -0.9580 -2.4584 46 1 8.1082 3.4256 -5.3027 47 1 5.1336 2.3945 -3.6398 48 1 6.5539 3.2124 -2.9423 49 1 4.4928 3.4206 -1.5084 50 1 5.8422 2.6091 -0.6772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566696864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:17 Heat of formation + Delta-G solvation = 84.445149 kcal Electronic energy + Delta-G solvation = -30933.756060 eV Core-core repulsion = 26999.089988 eV Total energy + Delta-G solvation = -3934.666072 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.21315 -40.41441 -37.31887 -36.24814 -35.09447 -33.40879 -32.12611 -31.43359 -30.47692 -29.94323 -29.35470 -26.50177 -25.78300 -24.67288 -22.91787 -22.25420 -21.96395 -21.82089 -21.37714 -19.76842 -19.00925 -17.48312 -17.32271 -16.52414 -16.05864 -15.39366 -15.16318 -15.03856 -14.91705 -14.58195 -14.48658 -14.10331 -13.75045 -13.72507 -13.44613 -13.17376 -13.00366 -12.94507 -12.62934 -12.55047 -12.50117 -12.26529 -11.98643 -11.75938 -11.56705 -11.40914 -11.17350 -11.01783 -10.92423 -10.69917 -10.44123 -10.15256 -10.13966 -10.07658 -10.07378 -9.80543 -9.70629 -9.52676 -9.18922 -8.56684 -8.35385 -6.61534 -5.75812 -3.18593 1.50519 2.00172 2.52270 2.92077 3.00297 3.40790 3.48417 3.52255 4.03569 4.19033 4.25562 4.39159 4.53942 4.55590 4.70004 4.71621 4.91198 5.00183 5.05539 5.11023 5.19458 5.28467 5.32184 5.43911 5.44670 5.50076 5.56643 5.62664 5.75642 5.79373 5.79555 5.99447 6.08808 6.12772 6.25691 6.32479 6.36283 6.50029 6.55094 6.66099 6.72145 6.80577 6.96825 7.04595 7.31614 7.48479 7.67488 7.85016 8.01117 8.15000 8.49996 9.25438 9.88048 10.45186 11.33157 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011171 B = 0.003840 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.937645 B = 7289.951826 C = 8867.472120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.146 4.146 3 C 0.097 3.903 4 N -0.603 5.603 5 C 0.502 3.498 6 O -0.502 6.502 7 C 0.137 3.863 8 H 0.124 0.876 9 C -0.164 4.164 10 N -0.362 5.362 11 C 0.276 3.724 12 N -0.548 5.548 13 C 0.200 3.800 14 N -0.319 5.319 15 C 0.162 3.838 16 C -0.145 4.145 17 C 0.151 3.849 18 N -0.589 5.589 19 C -0.248 4.248 20 H 0.064 0.936 21 C 0.004 3.996 22 N -0.904 5.904 23 Si 0.901 3.099 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.178 3.822 28 C -0.155 4.155 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.214 0.786 40 H 0.216 0.784 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.055 0.945 46 H 0.252 0.748 47 H 0.016 0.984 48 H 0.086 0.914 49 H 0.044 0.956 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.936 -0.623 14.689 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C -0.026 4.026 4 N -0.336 5.336 5 C 0.285 3.715 6 O -0.376 6.376 7 C 0.029 3.971 8 H 0.142 0.858 9 C -0.222 4.222 10 N -0.153 5.153 11 C -0.021 4.021 12 N -0.275 5.275 13 C -0.103 4.103 14 N -0.146 5.146 15 C 0.060 3.940 16 C -0.185 4.185 17 C 0.024 3.976 18 N -0.311 5.311 19 C -0.378 4.378 20 H 0.081 0.919 21 C -0.195 4.195 22 N -0.549 5.549 23 Si 0.731 3.269 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.215 1.215 27 C 0.051 3.949 28 C -0.195 4.195 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.231 0.769 40 H 0.233 0.767 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.064 0.936 44 H 0.034 0.966 45 H 0.073 0.927 46 H 0.062 0.938 47 H 0.034 0.966 48 H 0.104 0.896 49 H 0.063 0.937 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.352 -0.995 14.540 22.660 hybrid contribution 0.758 0.282 -0.319 0.869 sum -16.594 -0.713 14.221 21.865 Atomic orbital electron populations 1.21707 0.95003 1.02132 1.01896 1.22003 0.96138 0.97068 1.03257 1.21888 0.79944 0.97290 1.03461 1.48295 1.06162 1.71999 1.07158 1.20408 0.88301 0.77862 0.84881 1.90797 1.13401 1.47114 1.86250 1.21315 0.91394 1.00567 0.83817 0.85846 1.22239 1.02523 0.92837 1.04633 1.50073 1.32066 1.06267 1.26859 1.25871 0.88047 0.98985 0.89182 1.70580 1.27825 1.04795 1.24287 1.25968 0.93842 0.94389 0.96144 1.78030 1.22754 1.00351 1.13451 1.21170 0.93137 0.97214 0.82433 1.22417 0.99083 0.95065 1.01900 1.20831 0.94182 0.90593 0.91997 1.44005 1.05895 1.00109 1.81141 1.19213 0.83216 1.13756 1.21628 0.91860 1.25047 0.97784 1.00709 0.95933 1.70027 1.33783 1.25924 1.25161 0.86242 0.85622 0.77793 0.77271 1.20216 1.21732 1.21546 1.20690 0.94087 0.90323 0.89769 1.22671 0.99061 0.94473 1.03289 0.92368 0.92702 0.92352 0.90947 0.91799 0.90338 0.89807 0.88833 0.90018 0.90359 0.76947 0.76742 0.90272 0.90543 0.93580 0.96633 0.92651 0.93772 0.96597 0.89564 0.93740 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.55 16 2 C -0.15 -1.19 6.17 -26.74 -0.16 -1.36 16 3 C 0.10 0.82 4.82 -4.05 -0.02 0.80 16 4 N -0.60 -7.77 2.42 -166.07 -0.40 -8.18 16 5 C 0.50 7.13 6.31 -10.99 -0.07 7.06 16 6 O -0.50 -9.62 12.61 5.55 0.07 -9.55 16 7 C 0.14 1.42 2.91 -69.08 -0.20 1.22 16 8 H 0.12 1.11 6.61 -51.93 -0.34 0.77 16 9 C -0.16 -1.07 8.65 37.16 0.32 -0.75 16 10 N -0.36 -4.63 3.20 -57.25 -0.18 -4.82 16 11 C 0.28 3.43 11.48 -90.65 -1.04 2.39 16 12 N -0.55 -7.63 11.19 -15.83 -0.18 -7.81 16 13 C 0.20 2.58 13.03 -91.81 -1.20 1.38 16 14 N -0.32 -4.53 12.70 29.29 0.37 -4.16 16 15 C 0.16 2.67 2.50 -67.89 -0.17 2.50 16 16 C -0.14 -2.71 5.27 -26.62 -0.14 -2.85 16 17 C 0.15 3.29 6.52 -3.71 -0.02 3.27 16 18 N -0.59 -15.22 2.99 -172.32 -0.51 -15.73 16 19 C -0.25 -7.09 9.57 -15.06 -0.14 -7.23 16 20 H 0.06 1.81 7.88 -52.48 -0.41 1.40 16 21 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 22 N -0.90 -26.58 11.27 55.49 0.63 -25.96 16 23 Si 0.90 22.43 29.58 -169.99 -5.03 17.40 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 C 0.18 4.29 5.28 -3.71 -0.02 4.27 16 28 C -0.15 -3.05 5.26 -26.61 -0.14 -3.19 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 33 H 0.06 0.57 7.50 -51.93 -0.39 0.18 16 34 H 0.08 0.47 4.62 -51.93 -0.24 0.23 16 35 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 36 H 0.09 0.50 6.33 -51.93 -0.33 0.17 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.51 6.68 -51.93 -0.35 0.16 16 39 H 0.21 1.92 7.08 -52.49 -0.37 1.55 16 40 H 0.22 1.93 8.06 -52.48 -0.42 1.51 16 41 H 0.08 1.23 7.88 -51.93 -0.41 0.82 16 42 H 0.08 1.68 6.39 -51.92 -0.33 1.35 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.05 1.21 7.93 -51.93 -0.41 0.80 16 46 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.09 2.36 6.17 -51.93 -0.32 2.04 16 49 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.08 1.82 6.05 -51.93 -0.31 1.51 16 LS Contribution 388.70 15.07 5.86 5.86 Total: -1.00 -35.83 388.70 -10.11 -45.94 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -8.00 Total: 0.02 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -2.73 Total: 6.98 kcal Atomic # 7 Polarization: -66.37 SS G_CDS: -0.28 Total: -66.65 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.07 Total: -9.55 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.83 -10.11 -45.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566696864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.387 kcal (2) G-P(sol) polarization free energy of solvation -35.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds