Wall clock time and date at job start Tue Mar 31 2020 19:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47347 * 2 1 4 4 N 1.46500 * 109.47184 * 180.02562 * 3 2 1 5 5 C 1.34777 * 119.99749 * 263.33560 * 4 3 2 6 6 O 1.21288 * 119.99463 * 185.00778 * 5 4 3 7 7 C 1.50694 * 120.00198 * 5.00988 * 5 4 3 8 8 H 1.08994 * 109.46981 * 39.83981 * 7 5 4 9 9 C 1.53003 * 109.47184 * 279.83672 * 7 5 4 10 10 N 1.46499 * 109.47205 * 159.83678 * 7 5 4 11 11 C 1.34434 * 126.82211 * 84.71023 * 10 7 5 12 12 N 1.30834 * 108.07593 * 179.89550 * 11 10 7 13 13 C 1.33240 * 109.82864 * 0.37893 * 12 11 10 14 14 N 1.30714 * 108.94907 * 359.76838 * 13 12 11 15 15 C 1.46499 * 120.00277 * 83.33234 * 4 3 2 16 16 C 1.53037 * 109.46624 * 240.07208 * 15 4 3 17 17 C 1.53186 * 109.31663 * 178.61612 * 16 15 4 18 18 N 1.46927 * 108.77568 * 54.63262 * 17 16 15 19 19 C 1.36937 * 120.62998 * 126.41959 * 18 17 16 20 20 H 1.08008 * 119.99751 * 330.25517 * 19 18 17 21 21 C 1.38811 * 120.00133 * 150.26201 * 19 18 17 22 22 N 1.31619 * 120.00065 * 343.75254 * 21 19 18 23 23 Si 1.86801 * 120.00133 * 163.75734 * 21 19 18 24 24 H 1.48505 * 109.47038 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47223 * 119.99594 * 23 21 19 26 26 H 1.48498 * 109.47229 * 240.00266 * 23 21 19 27 27 C 1.46921 * 118.73969 * 306.39042 * 18 17 16 28 28 C 1.53046 * 109.45989 * 120.00130 * 15 4 3 29 29 H 1.09003 * 109.47528 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46861 * 299.99745 * 1 2 3 31 31 H 1.08996 * 109.47548 * 59.99912 * 1 2 3 32 32 H 1.09009 * 109.46697 * 239.99652 * 2 1 3 33 33 H 1.09007 * 109.47110 * 120.00655 * 2 1 3 34 34 H 1.08992 * 109.47238 * 60.00204 * 3 2 1 35 35 H 1.09002 * 109.46900 * 300.00096 * 3 2 1 36 36 H 1.09004 * 109.46862 * 48.88626 * 9 7 5 37 37 H 1.08994 * 109.46936 * 168.88532 * 9 7 5 38 38 H 1.08997 * 109.47164 * 288.88738 * 9 7 5 39 39 H 1.08000 * 125.95933 * 0.03902 * 11 10 7 40 40 H 1.08007 * 125.52287 * 179.80034 * 13 12 11 41 41 H 1.08998 * 109.44733 * 0.04031 * 15 4 3 42 42 H 1.09008 * 109.49253 * 298.56417 * 16 15 4 43 43 H 1.09003 * 109.49644 * 58.65657 * 16 15 4 44 44 H 1.09006 * 109.58554 * 294.84412 * 17 16 15 45 45 H 1.09000 * 109.70630 * 174.48975 * 17 16 15 46 46 H 0.96994 * 120.00231 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.59095 * 293.82765 * 27 18 17 48 48 H 1.08993 * 109.70491 * 173.46689 * 27 18 17 49 49 H 1.09003 * 109.49508 * 301.33658 * 28 15 4 50 50 H 1.08995 * 109.49466 * 61.43412 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1793 1.5776 1.1585 6 8 5.3887 1.6689 1.1493 7 6 3.4307 1.6154 2.4658 8 1 2.6178 0.8898 2.4400 9 6 2.8568 3.0168 2.6845 10 7 4.3451 1.2857 3.5618 11 6 5.1654 2.1316 4.2089 12 7 5.8130 1.4518 5.1200 13 6 5.4407 0.1731 5.0796 14 7 4.5434 0.0218 4.1413 15 6 4.2370 1.2952 -1.2611 16 6 5.1154 0.0437 -1.1976 17 6 5.8528 -0.1260 -2.5295 18 7 6.5868 1.1121 -2.8247 19 6 7.9283 1.0796 -3.0980 20 1 8.5500 0.3124 -2.6605 21 6 8.4889 2.0326 -3.9372 22 7 7.7164 2.7599 -4.7160 23 14 10.3399 2.2830 -3.9611 24 1 10.9785 1.3472 -3.0010 25 1 10.8575 2.0186 -5.3276 26 1 10.6554 3.6815 -3.5742 27 6 5.8541 2.3856 -2.8219 28 6 5.1168 2.5271 -1.4865 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 1.6768 1.9562 0.8899 35 1 1.6766 1.9562 -0.8900 36 1 2.3374 3.3415 1.7828 37 1 2.1567 2.9963 3.5197 38 1 3.6674 3.7108 2.9067 39 1 5.2697 3.1885 4.0125 40 1 5.8187 -0.6110 5.7189 41 1 3.5281 1.1999 -2.0835 42 1 5.8410 0.1491 -0.3909 43 1 4.4906 -0.8303 -1.0136 44 1 5.1323 -0.3219 -3.3237 45 1 6.5534 -0.9580 -2.4584 46 1 8.1082 3.4256 -5.3027 47 1 5.1336 2.3945 -3.6398 48 1 6.5539 3.2124 -2.9423 49 1 4.4928 3.4206 -1.5084 50 1 5.8422 2.6091 -0.6772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566696864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:16 Heat of formation + Delta-G solvation = 63.452616 kcal Electronic energy + Delta-G solvation = -30934.666364 eV Core-core repulsion = 26999.089988 eV Total energy + Delta-G solvation = -3935.576377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.15579 -41.55018 -38.89195 -37.32093 -36.14961 -34.78275 -33.51212 -32.41601 -31.90816 -31.51855 -30.65932 -27.38127 -27.13600 -25.86304 -24.35220 -23.90923 -22.98135 -22.80318 -22.27967 -21.27079 -20.22936 -18.95193 -18.41576 -17.87821 -17.20159 -16.78094 -16.43991 -16.16684 -15.95966 -15.62825 -15.46751 -15.34992 -15.33533 -15.01454 -14.82591 -14.59208 -14.25288 -14.03242 -13.70050 -13.51017 -13.39210 -13.26681 -13.07229 -12.94130 -12.73419 -12.68594 -12.60520 -12.55533 -12.24899 -12.16882 -12.02457 -11.85377 -11.63616 -11.43905 -11.36071 -11.17734 -11.07296 -10.79301 -10.61859 -10.31894 -9.65625 -8.69852 -7.92720 -5.38455 0.54566 1.12642 1.40245 1.42458 1.50314 1.53257 1.93021 2.01482 2.46565 3.15915 3.23762 3.43450 3.43897 3.63919 3.69646 3.88450 3.93870 3.96583 3.98354 4.16667 4.24950 4.29737 4.36530 4.47001 4.49021 4.57218 4.62168 4.62618 4.67704 4.79217 4.83535 4.91482 4.97023 5.01031 5.02929 5.11793 5.22466 5.24666 5.28433 5.35522 5.43557 5.46422 5.48423 5.58444 5.61613 5.74204 5.78233 6.35730 6.38021 7.04213 7.09281 7.11509 7.81436 8.32812 9.13718 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011171 B = 0.003840 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.937645 B = 7289.951826 C = 8867.472120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.143 4.143 3 C 0.091 3.909 4 N -0.597 5.597 5 C 0.496 3.504 6 O -0.559 6.559 7 C 0.142 3.858 8 H 0.142 0.858 9 C -0.161 4.161 10 N -0.367 5.367 11 C 0.272 3.728 12 N -0.575 5.575 13 C 0.194 3.806 14 N -0.348 5.348 15 C 0.172 3.828 16 C -0.128 4.128 17 C 0.148 3.852 18 N -0.609 5.609 19 C -0.267 4.267 20 H 0.053 0.947 21 C -0.042 4.042 22 N -0.929 5.929 23 Si 0.962 3.038 24 H -0.275 1.275 25 H -0.284 1.284 26 H -0.287 1.287 27 C 0.185 3.815 28 C -0.138 4.138 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.240 0.760 40 H 0.243 0.757 41 H 0.099 0.901 42 H 0.041 0.959 43 H 0.070 0.930 44 H 0.028 0.972 45 H 0.044 0.956 46 H 0.252 0.748 47 H 0.008 0.992 48 H 0.047 0.953 49 H 0.068 0.932 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.569 -0.169 15.810 25.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C -0.030 4.030 4 N -0.328 5.328 5 C 0.283 3.717 6 O -0.437 6.437 7 C 0.035 3.965 8 H 0.159 0.841 9 C -0.219 4.219 10 N -0.157 5.157 11 C -0.024 4.024 12 N -0.303 5.303 13 C -0.108 4.108 14 N -0.175 5.175 15 C 0.069 3.931 16 C -0.168 4.168 17 C 0.022 3.978 18 N -0.333 5.333 19 C -0.397 4.397 20 H 0.070 0.930 21 C -0.238 4.238 22 N -0.574 5.574 23 Si 0.790 3.210 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.214 1.214 27 C 0.059 3.941 28 C -0.178 4.178 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.129 0.871 35 H 0.117 0.883 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.256 0.744 40 H 0.259 0.741 41 H 0.117 0.883 42 H 0.060 0.940 43 H 0.088 0.912 44 H 0.045 0.955 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.026 0.974 48 H 0.066 0.934 49 H 0.087 0.913 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.058 -0.558 15.670 25.459 hybrid contribution 1.558 0.097 -0.676 1.701 sum -18.499 -0.461 14.995 23.818 Atomic orbital electron populations 1.21676 0.93107 1.02441 1.03057 1.21949 0.97680 0.96441 1.02059 1.22264 0.76687 0.98131 1.05884 1.48205 1.07968 1.71178 1.05469 1.21155 0.87848 0.76409 0.86328 1.90789 1.16064 1.49645 1.87176 1.21539 0.90511 1.03507 0.80944 0.84076 1.22346 1.02967 0.89993 1.06569 1.50233 1.32493 1.05828 1.27148 1.26434 0.87359 1.00060 0.88563 1.70583 1.28758 1.05467 1.25447 1.26586 0.93306 0.94845 0.96088 1.77951 1.23749 1.01581 1.14268 1.20807 0.93026 0.94264 0.84994 1.22168 0.98682 0.97441 0.98547 1.20946 0.94148 0.88809 0.93883 1.44237 1.05600 1.01892 1.81527 1.19414 0.84844 1.13849 1.21618 0.92952 1.25724 1.01733 1.00567 0.95777 1.70145 1.35276 1.26310 1.25682 0.85298 0.80888 0.77490 0.77329 1.19962 1.21072 1.21381 1.20493 0.93129 0.88524 0.91965 1.22370 0.98882 0.97242 0.99281 0.92572 0.90985 0.91750 0.92645 0.92619 0.87064 0.88308 0.87036 0.87413 0.90425 0.74380 0.74077 0.88326 0.94004 0.91172 0.95456 0.93690 0.93907 0.97377 0.93437 0.91347 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.91 71.98 0.71 -0.53 16 2 C -0.14 -1.88 6.17 30.59 0.19 -1.70 16 3 C 0.09 1.19 4.82 86.38 0.42 1.61 16 4 N -0.60 -14.05 2.42 -797.71 -1.93 -15.98 16 5 C 0.50 13.41 6.31 87.65 0.55 13.96 16 6 O -0.56 -21.68 12.61 -3.05 -0.04 -21.72 16 7 C 0.14 2.57 2.91 44.24 0.13 2.70 16 8 H 0.14 2.06 6.61 -2.39 -0.02 2.04 16 9 C -0.16 -1.48 8.65 71.98 0.62 -0.85 16 10 N -0.37 -8.87 3.20 -335.03 -1.07 -9.94 16 11 C 0.27 6.49 11.48 180.36 2.07 8.56 16 12 N -0.57 -15.67 11.19 -203.99 -2.28 -17.95 16 13 C 0.19 4.90 13.03 180.77 2.36 7.26 16 14 N -0.35 -9.61 12.70 -61.24 -0.78 -10.38 16 15 C 0.17 5.48 2.50 45.02 0.11 5.59 16 16 C -0.13 -4.82 5.27 30.67 0.16 -4.66 16 17 C 0.15 6.56 6.52 86.36 0.56 7.12 16 18 N -0.61 -32.45 2.99 -699.10 -2.09 -34.54 16 19 C -0.27 -15.77 9.57 84.03 0.80 -14.96 16 20 H 0.05 3.13 7.88 -2.91 -0.02 3.10 16 21 C -0.04 -2.45 4.92 84.86 0.42 -2.04 16 22 N -0.93 -55.94 11.27 21.65 0.24 -55.69 16 23 Si 0.96 47.18 29.58 68.60 2.03 49.21 16 24 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 25 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 27 C 0.19 9.17 5.28 86.36 0.46 9.62 16 28 C -0.14 -5.43 5.26 30.67 0.16 -5.27 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.06 0.84 7.50 -2.38 -0.02 0.82 16 34 H 0.11 0.76 4.62 -2.39 -0.01 0.74 16 35 H 0.10 1.09 8.06 -2.39 -0.02 1.07 16 36 H 0.11 0.64 6.33 -2.39 -0.02 0.63 16 37 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.08 0.77 6.68 -2.39 -0.02 0.76 16 39 H 0.24 3.96 7.08 -2.91 -0.02 3.94 16 40 H 0.24 4.14 8.06 -2.91 -0.02 4.12 16 41 H 0.10 2.82 7.88 -2.39 -0.02 2.80 16 42 H 0.04 1.89 6.39 -2.38 -0.02 1.87 16 43 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 45 H 0.04 2.03 7.93 -2.39 -0.02 2.01 16 46 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 47 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.05 2.70 6.17 -2.39 -0.01 2.68 16 49 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 50 H 0.05 2.38 6.05 -2.39 -0.01 2.36 16 Total: -1.00 -82.40 388.70 4.74 -77.66 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.93 Total: 12.92 kcal Atomic # 6 Polarization: 16.70 SS G_CDS: 9.72 Total: 26.43 kcal Atomic # 7 Polarization: -136.59 SS G_CDS: -7.91 Total: -144.49 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.04 Total: -21.72 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -82.40 4.74 -77.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566696864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.112 kcal (2) G-P(sol) polarization free energy of solvation -82.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds