Wall clock time and date at job start Tue Mar 31 2020 19:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47239 * 2 1 4 4 N 1.46498 * 109.46936 * 119.99747 * 2 1 3 5 5 C 1.36937 * 120.00381 * 294.90020 * 4 2 1 6 6 H 1.07994 * 119.99984 * 37.14408 * 5 4 2 7 7 C 1.38815 * 120.00364 * 217.14627 * 5 4 2 8 8 N 1.31626 * 119.99321 * 21.27172 * 7 5 4 9 9 Si 1.86794 * 120.00337 * 201.27166 * 7 5 4 10 10 H 1.48508 * 109.46747 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47080 * 119.99636 * 9 7 5 12 12 H 1.48488 * 109.47244 * 240.00085 * 9 7 5 13 13 C 1.46502 * 119.99853 * 114.90659 * 4 2 1 14 14 C 1.53003 * 109.46634 * 269.99721 * 13 4 2 15 15 C 1.53003 * 109.46894 * 180.02562 * 14 13 4 16 16 N 1.46498 * 109.47180 * 180.02562 * 15 14 13 17 17 C 1.34778 * 120.00434 * 180.02562 * 16 15 14 18 18 O 1.21288 * 119.99677 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00599 * 179.97438 * 17 16 15 20 20 H 1.09002 * 109.68780 * 60.54168 * 19 17 16 21 21 C 1.53434 * 109.69584 * 181.12825 * 19 17 16 22 22 C 1.53124 * 109.54658 * 169.42912 * 21 19 17 23 23 C 1.53421 * 109.57313 * 289.92868 * 22 21 19 24 24 C 1.50600 * 108.33589 * 49.82148 * 23 22 21 25 25 N 1.32903 * 129.16103 * 163.39018 * 24 23 22 26 26 N 1.29023 * 108.63489 * 180.22384 * 25 24 23 27 27 N 1.29102 * 110.25682 * 359.97438 * 26 25 24 28 28 H 0.97007 * 126.00599 * 179.97438 * 27 26 25 29 29 C 1.34390 * 107.99153 * 359.92858 * 27 26 25 30 30 H 1.09006 * 109.46623 * 303.31154 * 1 2 3 31 31 H 1.09001 * 109.46817 * 63.30758 * 1 2 3 32 32 H 1.08997 * 109.47088 * 183.31569 * 1 2 3 33 33 H 1.08996 * 109.46857 * 239.99789 * 2 1 3 34 34 H 1.09000 * 109.46987 * 181.62191 * 3 2 1 35 35 H 1.08996 * 109.46470 * 301.62070 * 3 2 1 36 36 H 1.08997 * 109.47266 * 61.61678 * 3 2 1 37 37 H 0.97001 * 119.99111 * 180.02562 * 8 7 5 38 38 H 1.08998 * 109.47294 * 150.00054 * 13 4 2 39 39 H 1.09002 * 109.47330 * 29.99436 * 13 4 2 40 40 H 1.08999 * 109.47405 * 60.00520 * 14 13 4 41 41 H 1.09000 * 109.47480 * 299.99635 * 14 13 4 42 42 H 1.09002 * 109.47150 * 299.99764 * 15 14 13 43 43 H 1.09000 * 109.47392 * 59.99713 * 15 14 13 44 44 H 0.97004 * 120.00304 * 359.97438 * 16 15 14 45 45 H 1.08993 * 109.45616 * 289.45245 * 21 19 17 46 46 H 1.09000 * 109.45739 * 49.40208 * 21 19 17 47 47 H 1.08992 * 109.44909 * 169.89576 * 22 21 19 48 48 H 1.08997 * 109.45334 * 49.96237 * 22 21 19 49 49 H 1.09003 * 109.69032 * 290.10338 * 23 22 21 50 50 H 1.08997 * 109.71771 * 169.54479 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7758 -0.1650 2.4372 6 1 0.8341 0.3220 2.6428 7 6 2.7405 -0.2581 3.4311 8 7 4.0015 -0.4529 3.1079 9 14 2.2490 -0.1070 5.2269 10 1 0.7824 0.1063 5.3224 11 1 2.6154 -1.3530 5.9469 12 1 2.9581 1.0452 5.8389 13 6 2.7662 -1.9434 1.0647 14 6 1.7930 -3.1236 1.0930 15 6 2.5741 -4.4321 0.9563 16 7 1.6422 -5.5622 0.9827 17 6 2.1080 -6.8225 0.8774 18 8 3.2987 -7.0211 0.7602 19 6 1.1495 -7.9850 0.9051 20 1 0.4490 -7.9034 0.0739 21 6 1.9300 -9.3015 0.7972 22 6 0.9937 -10.4776 1.0884 23 6 0.6197 -10.4806 2.5763 24 6 0.1598 -9.0967 2.9520 25 7 -0.5269 -8.7012 4.0190 26 7 -0.7111 -7.4265 3.9415 27 7 -0.1723 -6.9617 2.8643 28 1 -0.1749 -6.0343 2.5798 29 6 0.3936 -7.9881 2.2069 30 1 -0.3633 0.5644 0.8589 31 1 -0.3633 0.4616 -0.9182 32 1 -0.3633 -1.0259 0.0594 33 1 1.8933 -0.5139 -0.8899 34 1 3.1297 1.4426 -0.0291 35 1 1.6532 1.9646 -0.8751 36 1 1.7007 1.9480 0.9041 37 1 4.6755 -0.5183 3.8025 38 1 3.4713 -2.0341 1.8910 39 1 3.3109 -1.9441 0.1205 40 1 1.0879 -3.0330 0.2667 41 1 1.2484 -3.1230 2.0372 42 1 3.1190 -4.4331 0.0122 43 1 3.2790 -4.5226 1.7827 44 1 0.6898 -5.4035 1.0768 45 1 2.3362 -9.4014 -0.2093 46 1 2.7464 -9.2998 1.5194 47 1 1.4961 -11.4120 0.8385 48 1 0.0899 -10.3796 0.4871 49 1 1.4901 -10.7532 3.1733 50 1 -0.1844 -11.1951 2.7520 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567647888.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:00 Heat of formation + Delta-G solvation = 56.596269 kcal Electronic energy + Delta-G solvation = -29644.785890 eV Core-core repulsion = 25708.912200 eV Total energy + Delta-G solvation = -3935.873690 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.78359 -40.06494 -37.26947 -36.78600 -35.27697 -34.19380 -32.58653 -31.75370 -30.77133 -30.40251 -28.85446 -26.26072 -25.84271 -24.73099 -23.62057 -23.18134 -22.60733 -21.27306 -20.68147 -19.85586 -19.59036 -18.46108 -17.32849 -16.58537 -16.42110 -15.86677 -15.72309 -15.21776 -14.96952 -14.47088 -14.30889 -14.20201 -14.07560 -13.77831 -13.74376 -13.25677 -12.94793 -12.57749 -12.48779 -11.91695 -11.84964 -11.69315 -11.62323 -11.57373 -11.54850 -11.39454 -11.37197 -11.06826 -10.96789 -10.82855 -10.76777 -10.63891 -10.48446 -10.29071 -10.10611 -9.95787 -9.69396 -9.57812 -9.17231 -9.15049 -8.53698 -6.62585 -5.83980 -3.41871 1.21317 2.18781 2.29287 2.49091 2.95355 3.30715 3.41175 3.41793 3.91426 4.03263 4.28503 4.39747 4.42340 4.53269 4.81742 4.87964 4.93974 5.05791 5.11372 5.24491 5.29755 5.48207 5.51797 5.57664 5.63752 5.68137 5.70345 5.84634 5.88299 5.92521 5.96941 6.06198 6.15906 6.23460 6.27657 6.37859 6.48710 6.50404 6.59275 6.65528 6.71550 6.72334 6.98303 7.14336 7.24378 7.28301 7.59555 7.79062 7.95054 8.18396 8.47273 9.14307 9.76944 10.35125 11.15888 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013377 B = 0.002914 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.566041 B = 9607.813934 C =10422.221162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.162 3.838 3 C -0.146 4.146 4 N -0.579 5.579 5 C -0.253 4.253 6 H 0.060 0.940 7 C 0.013 3.987 8 N -0.885 5.885 9 Si 0.890 3.110 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.151 3.849 14 C -0.148 4.148 15 C 0.118 3.882 16 N -0.730 5.730 17 C 0.511 3.489 18 O -0.521 6.521 19 C -0.032 4.032 20 H 0.119 0.881 21 C -0.098 4.098 22 C -0.119 4.119 23 C -0.036 4.036 24 C -0.005 4.005 25 N -0.258 5.258 26 N -0.076 5.076 27 N -0.378 5.378 28 H 0.446 0.554 29 C -0.015 4.015 30 H 0.052 0.948 31 H 0.035 0.965 32 H 0.042 0.958 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.029 0.971 36 H 0.058 0.942 37 H 0.254 0.746 38 H 0.098 0.902 39 H 0.025 0.975 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.387 0.613 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.069 0.931 49 H 0.086 0.914 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.103 -16.883 -8.195 20.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.055 3.945 3 C -0.204 4.204 4 N -0.299 5.299 5 C -0.383 4.383 6 H 0.078 0.922 7 C -0.188 4.188 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.216 1.216 13 C 0.024 3.976 14 C -0.188 4.188 15 C -0.005 4.005 16 N -0.382 5.382 17 C 0.295 3.705 18 O -0.396 6.396 19 C -0.055 4.055 20 H 0.136 0.864 21 C -0.136 4.136 22 C -0.157 4.157 23 C -0.075 4.075 24 C -0.145 4.145 25 N -0.124 5.124 26 N -0.055 5.055 27 N -0.098 5.098 28 H 0.293 0.707 29 C -0.150 4.150 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.115 0.885 39 H 0.044 0.956 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.221 0.779 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.088 0.912 49 H 0.105 0.895 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.878 -16.752 -6.822 19.351 hybrid contribution -0.201 0.835 0.005 0.859 sum -7.079 -15.917 -6.816 18.707 Atomic orbital electron populations 1.22206 0.98917 1.00396 0.99798 1.20420 0.91929 0.92377 0.89782 1.22035 1.00850 0.97799 0.99763 1.43864 1.64325 1.20420 1.01276 1.18934 0.97538 1.34645 0.87180 0.92204 1.25156 0.94524 1.00414 0.98675 1.69991 0.99403 1.51537 1.31845 0.86428 0.78295 0.77453 0.85822 1.20119 1.21506 1.21624 1.20804 0.93009 0.82817 1.01014 1.22551 1.00594 0.94262 1.01436 1.21596 0.92202 0.84300 1.02364 1.46373 1.10654 1.06590 1.74589 1.20387 0.89461 0.83775 0.76835 1.90742 1.16040 1.84814 1.48008 1.20082 0.96110 0.96525 0.92833 0.86351 1.21481 0.97846 0.90007 1.04286 1.21679 0.99933 0.98827 0.95258 1.20034 1.01644 0.89482 0.96345 1.21729 1.02567 0.97193 0.92993 1.74868 1.15025 1.02330 1.20196 1.78647 1.17685 1.05450 1.03692 1.44889 1.36951 1.11599 1.16398 0.70689 1.21465 1.05145 0.88800 0.99632 0.92928 0.94587 0.93888 0.93752 0.93314 0.95173 0.92340 0.93613 0.88484 0.95648 0.93102 0.91782 0.91442 0.91150 0.77897 0.89624 0.89860 0.89895 0.91180 0.89547 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.19 37.16 0.34 -2.32 16 2 C 0.16 3.17 3.37 -67.93 -0.23 2.94 16 3 C -0.15 -2.84 9.11 37.16 0.34 -2.51 16 4 N -0.58 -13.06 2.37 -165.66 -0.39 -13.46 16 5 C -0.25 -6.39 8.04 -15.06 -0.12 -6.51 16 6 H 0.06 1.54 7.14 -52.49 -0.37 1.17 16 7 C 0.01 0.33 4.96 -17.43 -0.09 0.24 16 8 N -0.89 -24.35 11.43 55.49 0.63 -23.71 16 9 Si 0.89 20.96 29.60 -169.99 -5.03 15.93 16 10 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.15 3.17 5.28 -4.04 -0.02 3.15 16 14 C -0.15 -2.44 5.65 -26.73 -0.15 -2.59 16 15 C 0.12 1.75 5.67 -4.04 -0.02 1.73 16 16 N -0.73 -8.50 5.13 -60.29 -0.31 -8.81 16 17 C 0.51 6.26 7.15 -10.99 -0.08 6.18 16 18 O -0.52 -8.36 15.84 5.55 0.09 -8.27 16 19 C -0.03 -0.28 2.91 -92.78 -0.27 -0.55 16 20 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 21 C -0.10 -0.77 4.66 -26.44 -0.12 -0.89 16 22 C -0.12 -0.69 5.90 -26.45 -0.16 -0.84 16 23 C -0.04 -0.28 6.30 -27.71 -0.17 -0.45 16 24 C 0.00 -0.05 7.11 -83.12 -0.59 -0.65 16 25 N -0.26 -3.64 12.40 33.16 0.41 -3.23 16 26 N -0.08 -1.06 13.40 60.35 0.81 -0.25 16 27 N -0.38 -4.22 6.76 33.39 0.23 -4.00 16 28 H 0.45 4.05 6.82 -190.07 -1.30 2.75 16 29 C -0.01 -0.15 6.38 -82.50 -0.53 -0.68 16 30 H 0.05 0.97 7.32 -51.93 -0.38 0.59 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.82 7.77 -51.93 -0.40 0.42 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 1.23 7.50 -51.93 -0.39 0.84 16 37 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 38 H 0.10 2.38 5.48 -51.93 -0.28 2.10 16 39 H 0.03 0.51 7.88 -51.93 -0.41 0.10 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.39 3.49 6.51 -40.82 -0.27 3.22 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.08 0.81 7.75 -51.93 -0.40 0.41 16 47 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 49 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 396.35 15.07 5.97 5.97 Total: -1.00 -31.61 396.35 -8.72 -40.33 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -9.26 Total: 3.23 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -1.87 Total: -3.74 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 1.38 Total: -53.46 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.09 Total: -8.27 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.61 -8.72 -40.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567647888.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.930 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds