Wall clock time and date at job start Tue Mar 31 2020 19:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47239 * 2 1 4 4 N 1.46498 * 109.46936 * 119.99747 * 2 1 3 5 5 C 1.36937 * 120.00381 * 294.90020 * 4 2 1 6 6 H 1.07994 * 119.99984 * 37.14408 * 5 4 2 7 7 C 1.38815 * 120.00364 * 217.14627 * 5 4 2 8 8 N 1.31626 * 119.99321 * 21.27172 * 7 5 4 9 9 Si 1.86794 * 120.00337 * 201.27166 * 7 5 4 10 10 H 1.48508 * 109.46747 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47080 * 119.99636 * 9 7 5 12 12 H 1.48488 * 109.47244 * 240.00085 * 9 7 5 13 13 C 1.46502 * 119.99853 * 114.90659 * 4 2 1 14 14 C 1.53003 * 109.46634 * 269.99721 * 13 4 2 15 15 C 1.53003 * 109.46894 * 180.02562 * 14 13 4 16 16 N 1.46498 * 109.47180 * 180.02562 * 15 14 13 17 17 C 1.34778 * 120.00434 * 180.02562 * 16 15 14 18 18 O 1.21288 * 119.99677 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00599 * 179.97438 * 17 16 15 20 20 H 1.09002 * 109.68780 * 60.54168 * 19 17 16 21 21 C 1.53434 * 109.69584 * 181.12825 * 19 17 16 22 22 C 1.53124 * 109.54658 * 169.42912 * 21 19 17 23 23 C 1.53421 * 109.57313 * 289.92868 * 22 21 19 24 24 C 1.50600 * 108.33589 * 49.82148 * 23 22 21 25 25 N 1.32903 * 129.16103 * 163.39018 * 24 23 22 26 26 N 1.29023 * 108.63489 * 180.22384 * 25 24 23 27 27 N 1.29102 * 110.25682 * 359.97438 * 26 25 24 28 28 H 0.97007 * 126.00599 * 179.97438 * 27 26 25 29 29 C 1.34390 * 107.99153 * 359.92858 * 27 26 25 30 30 H 1.09006 * 109.46623 * 303.31154 * 1 2 3 31 31 H 1.09001 * 109.46817 * 63.30758 * 1 2 3 32 32 H 1.08997 * 109.47088 * 183.31569 * 1 2 3 33 33 H 1.08996 * 109.46857 * 239.99789 * 2 1 3 34 34 H 1.09000 * 109.46987 * 181.62191 * 3 2 1 35 35 H 1.08996 * 109.46470 * 301.62070 * 3 2 1 36 36 H 1.08997 * 109.47266 * 61.61678 * 3 2 1 37 37 H 0.97001 * 119.99111 * 180.02562 * 8 7 5 38 38 H 1.08998 * 109.47294 * 150.00054 * 13 4 2 39 39 H 1.09002 * 109.47330 * 29.99436 * 13 4 2 40 40 H 1.08999 * 109.47405 * 60.00520 * 14 13 4 41 41 H 1.09000 * 109.47480 * 299.99635 * 14 13 4 42 42 H 1.09002 * 109.47150 * 299.99764 * 15 14 13 43 43 H 1.09000 * 109.47392 * 59.99713 * 15 14 13 44 44 H 0.97004 * 120.00304 * 359.97438 * 16 15 14 45 45 H 1.08993 * 109.45616 * 289.45245 * 21 19 17 46 46 H 1.09000 * 109.45739 * 49.40208 * 21 19 17 47 47 H 1.08992 * 109.44909 * 169.89576 * 22 21 19 48 48 H 1.08997 * 109.45334 * 49.96237 * 22 21 19 49 49 H 1.09003 * 109.69032 * 290.10338 * 23 22 21 50 50 H 1.08997 * 109.71771 * 169.54479 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7758 -0.1650 2.4372 6 1 0.8341 0.3220 2.6428 7 6 2.7405 -0.2581 3.4311 8 7 4.0015 -0.4529 3.1079 9 14 2.2490 -0.1070 5.2269 10 1 0.7824 0.1063 5.3224 11 1 2.6154 -1.3530 5.9469 12 1 2.9581 1.0452 5.8389 13 6 2.7662 -1.9434 1.0647 14 6 1.7930 -3.1236 1.0930 15 6 2.5741 -4.4321 0.9563 16 7 1.6422 -5.5622 0.9827 17 6 2.1080 -6.8225 0.8774 18 8 3.2987 -7.0211 0.7602 19 6 1.1495 -7.9850 0.9051 20 1 0.4490 -7.9034 0.0739 21 6 1.9300 -9.3015 0.7972 22 6 0.9937 -10.4776 1.0884 23 6 0.6197 -10.4806 2.5763 24 6 0.1598 -9.0967 2.9520 25 7 -0.5269 -8.7012 4.0190 26 7 -0.7111 -7.4265 3.9415 27 7 -0.1723 -6.9617 2.8643 28 1 -0.1749 -6.0343 2.5798 29 6 0.3936 -7.9881 2.2069 30 1 -0.3633 0.5644 0.8589 31 1 -0.3633 0.4616 -0.9182 32 1 -0.3633 -1.0259 0.0594 33 1 1.8933 -0.5139 -0.8899 34 1 3.1297 1.4426 -0.0291 35 1 1.6532 1.9646 -0.8751 36 1 1.7007 1.9480 0.9041 37 1 4.6755 -0.5183 3.8025 38 1 3.4713 -2.0341 1.8910 39 1 3.3109 -1.9441 0.1205 40 1 1.0879 -3.0330 0.2667 41 1 1.2484 -3.1230 2.0372 42 1 3.1190 -4.4331 0.0122 43 1 3.2790 -4.5226 1.7827 44 1 0.6898 -5.4035 1.0768 45 1 2.3362 -9.4014 -0.2093 46 1 2.7464 -9.2998 1.5194 47 1 1.4961 -11.4120 0.8385 48 1 0.0899 -10.3796 0.4871 49 1 1.4901 -10.7532 3.1733 50 1 -0.1844 -11.1951 2.7520 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567647888.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:59 Heat of formation + Delta-G solvation = 36.040574 kcal Electronic energy + Delta-G solvation = -29645.677252 eV Core-core repulsion = 25708.912200 eV Total energy + Delta-G solvation = -3936.765052 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.67351 -41.08068 -38.59392 -37.83208 -36.48905 -35.13156 -34.29776 -33.21449 -31.66057 -31.19574 -30.40569 -27.74180 -27.32295 -25.85353 -24.84688 -24.14382 -23.55059 -22.49369 -21.87367 -21.31005 -20.56358 -19.36186 -18.23973 -18.22900 -17.42613 -17.08487 -16.89053 -16.73467 -16.13089 -15.90928 -15.52402 -15.19026 -14.94405 -14.88441 -14.68056 -14.55716 -14.36235 -14.07226 -13.36500 -13.28465 -13.21246 -13.15895 -12.87775 -12.79729 -12.69678 -12.53967 -12.48934 -12.38124 -12.27170 -12.15117 -12.04179 -11.93313 -11.72277 -11.67445 -11.40976 -11.34565 -11.26863 -11.05204 -10.49990 -10.29505 -10.01433 -8.51348 -7.79338 -5.40112 0.33196 1.25743 1.39632 1.40456 1.46254 1.52541 1.60817 1.97597 2.49718 3.13884 3.25429 3.27823 3.50970 3.58543 3.71113 3.88989 4.11986 4.14846 4.24672 4.27300 4.31357 4.35145 4.44045 4.47807 4.57281 4.62574 4.71093 4.79487 4.89415 4.96479 4.97149 4.98610 5.06938 5.11215 5.14452 5.18274 5.20041 5.21846 5.27698 5.31657 5.45623 5.45754 5.62528 5.67278 5.67427 5.73879 5.88970 6.27637 6.51244 6.98076 7.21980 7.26233 7.93297 8.44078 9.15462 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013377 B = 0.002914 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.566041 B = 9607.813934 C =10422.221162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.152 3.848 3 C -0.139 4.139 4 N -0.593 5.593 5 C -0.241 4.241 6 H 0.055 0.945 7 C -0.035 4.035 8 N -0.916 5.916 9 Si 0.940 3.060 10 H -0.267 1.267 11 H -0.297 1.297 12 H -0.296 1.296 13 C 0.149 3.851 14 C -0.126 4.126 15 C 0.132 3.868 16 N -0.720 5.720 17 C 0.510 3.490 18 O -0.561 6.561 19 C -0.020 4.020 20 H 0.158 0.842 21 C -0.099 4.099 22 C -0.108 4.108 23 C -0.039 4.039 24 C -0.012 4.012 25 N -0.289 5.289 26 N -0.111 5.111 27 N -0.371 5.371 28 H 0.453 0.547 29 C -0.010 4.010 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.023 0.977 35 H 0.065 0.935 36 H 0.035 0.965 37 H 0.247 0.753 38 H 0.060 0.940 39 H 0.028 0.972 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.068 0.932 43 H 0.042 0.958 44 H 0.403 0.597 45 H 0.098 0.902 46 H 0.059 0.941 47 H 0.106 0.894 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.081 -18.311 -10.462 22.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.047 3.953 3 C -0.197 4.197 4 N -0.314 5.314 5 C -0.372 4.372 6 H 0.073 0.927 7 C -0.232 4.232 8 N -0.561 5.561 9 Si 0.770 3.230 10 H -0.191 1.191 11 H -0.224 1.224 12 H -0.223 1.223 13 C 0.022 3.978 14 C -0.166 4.166 15 C 0.008 3.992 16 N -0.373 5.373 17 C 0.296 3.704 18 O -0.439 6.439 19 C -0.043 4.043 20 H 0.176 0.824 21 C -0.137 4.137 22 C -0.146 4.146 23 C -0.078 4.078 24 C -0.153 4.153 25 N -0.154 5.154 26 N -0.089 5.089 27 N -0.093 5.093 28 H 0.301 0.699 29 C -0.146 4.146 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.061 0.939 44 H 0.240 0.760 45 H 0.117 0.883 46 H 0.078 0.922 47 H 0.124 0.876 48 H 0.105 0.895 49 H 0.105 0.895 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.922 -18.170 -9.089 22.190 hybrid contribution 0.443 1.307 0.618 1.512 sum -8.479 -16.863 -8.471 20.689 Atomic orbital electron populations 1.22055 0.96562 1.00939 1.00580 1.20668 0.93632 0.92027 0.89023 1.21967 0.99270 0.98235 1.00271 1.44096 1.64404 1.21368 1.01513 1.19051 0.96799 1.32965 0.88356 0.92694 1.25672 0.94585 1.01584 1.01334 1.70115 1.00081 1.53782 1.32096 0.85636 0.78246 0.76511 0.82643 1.19134 1.22413 1.22320 1.20710 0.93441 0.84134 0.99547 1.22178 0.99582 0.93124 1.01695 1.21205 0.92029 0.84707 1.01294 1.46167 1.11068 1.05866 1.74226 1.20997 0.89471 0.84355 0.75528 1.90734 1.18008 1.85379 1.49757 1.20214 0.95741 0.95268 0.93117 0.82440 1.21535 0.97562 0.90206 1.04393 1.21666 1.00257 0.98828 0.93812 1.20246 1.01990 0.87736 0.97813 1.22386 1.01770 0.99022 0.92103 1.74828 1.16299 1.02562 1.21687 1.78596 1.19444 1.05835 1.05062 1.44906 1.36375 1.12140 1.15879 0.69892 1.21769 1.04511 0.88386 0.99965 0.94640 0.91565 0.93164 0.92229 0.95736 0.91613 0.94596 0.94393 0.92232 0.95382 0.90801 0.92925 0.91325 0.93928 0.76046 0.88325 0.92221 0.87572 0.89537 0.89511 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 9.19 71.98 0.66 -3.83 16 2 C 0.15 5.69 3.37 45.00 0.15 5.84 16 3 C -0.14 -5.26 9.11 71.98 0.66 -4.60 16 4 N -0.59 -26.56 2.37 -678.01 -1.61 -28.17 16 5 C -0.24 -12.22 8.04 84.03 0.68 -11.54 16 6 H 0.06 2.82 7.14 -2.91 -0.02 2.80 16 7 C -0.03 -1.85 4.96 84.86 0.42 -1.43 16 8 N -0.92 -52.10 11.43 21.65 0.25 -51.85 16 9 Si 0.94 44.02 29.60 68.60 2.03 46.05 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 12 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 13 C 0.15 6.28 5.28 86.38 0.46 6.73 16 14 C -0.13 -4.02 5.65 30.60 0.17 -3.85 16 15 C 0.13 3.84 5.67 86.38 0.49 4.33 16 16 N -0.72 -15.64 5.13 -463.05 -2.37 -18.01 16 17 C 0.51 11.70 7.15 87.66 0.63 12.32 16 18 O -0.56 -17.69 15.84 -3.05 -0.05 -17.74 16 19 C -0.02 -0.30 2.91 -12.19 -0.04 -0.33 16 20 H 0.16 1.19 8.14 -2.39 -0.02 1.17 16 21 C -0.10 -1.29 4.66 30.78 0.14 -1.14 16 22 C -0.11 -0.86 5.90 30.78 0.18 -0.68 16 23 C -0.04 -0.51 6.30 29.96 0.19 -0.32 16 24 C -0.01 -0.25 7.11 41.75 0.30 0.04 16 25 N -0.29 -8.04 12.40 -48.99 -0.61 -8.65 16 26 N -0.11 -3.10 13.40 37.02 0.50 -2.60 16 27 N -0.37 -7.93 6.76 -48.27 -0.33 -8.26 16 28 H 0.45 7.68 6.82 -219.67 -1.50 6.18 16 29 C -0.01 -0.19 6.38 41.50 0.26 0.08 16 30 H 0.03 1.23 7.32 -2.38 -0.02 1.21 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 2.05 7.77 -2.39 -0.02 2.03 16 34 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.03 1.49 7.50 -2.39 -0.02 1.47 16 37 H 0.25 13.84 8.31 -92.71 -0.77 13.06 16 38 H 0.06 3.03 5.48 -2.39 -0.01 3.02 16 39 H 0.03 1.14 7.88 -2.39 -0.02 1.12 16 40 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.40 6.30 6.51 -92.71 -0.60 5.70 16 45 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.06 1.09 7.75 -2.39 -0.02 1.07 16 47 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.09 0.47 8.12 -2.39 -0.02 0.45 16 49 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -71.40 396.35 2.02 -69.38 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -1.15 Total: 18.24 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 5.35 Total: 1.62 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -4.17 Total: -117.55 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.05 Total: -17.74 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -71.40 2.02 -69.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567647888.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.420 kcal (2) G-P(sol) polarization free energy of solvation -71.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds