Wall clock time and date at job start Tue Mar 31 2020 19:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46637 * 2 1 4 4 N 1.46497 * 109.47027 * 119.99579 * 2 1 3 5 5 C 1.36935 * 119.99612 * 113.75354 * 4 2 1 6 6 H 1.08005 * 120.00070 * 207.19973 * 5 4 2 7 7 C 1.38814 * 120.00159 * 27.20187 * 5 4 2 8 8 N 1.31613 * 120.00067 * 214.55226 * 7 5 4 9 9 Si 1.86803 * 119.99814 * 34.55537 * 7 5 4 10 10 H 1.48503 * 109.46874 * 270.00091 * 9 7 5 11 11 H 1.48499 * 109.47251 * 150.00346 * 9 7 5 12 12 H 1.48497 * 109.47251 * 29.99845 * 9 7 5 13 13 C 1.46494 * 120.00486 * 293.75621 * 4 2 1 14 14 C 1.53008 * 109.47020 * 270.00065 * 13 4 2 15 15 C 1.53001 * 109.46978 * 179.97438 * 14 13 4 16 16 N 1.46502 * 109.46773 * 179.97438 * 15 14 13 17 17 C 1.34781 * 119.99856 * 180.02562 * 16 15 14 18 18 O 1.21283 * 120.00022 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99874 * 180.02562 * 17 16 15 20 20 H 1.08998 * 109.45096 * 300.04652 * 19 17 16 21 21 C 1.53140 * 109.45345 * 180.11500 * 19 17 16 22 22 C 1.53458 * 109.30899 * 170.53713 * 21 19 17 23 23 C 1.50795 * 108.13246 * 48.71769 * 22 21 19 24 24 N 1.29830 * 128.52360 * 164.04061 * 23 22 21 25 25 N 1.28913 * 109.48040 * 180.14963 * 24 23 22 26 26 C 1.30831 * 109.73988 * 359.97438 * 25 24 23 27 27 N 1.34694 * 107.06957 * 359.97102 * 26 25 24 28 28 C 1.46263 * 128.84388 * 180.10814 * 27 26 25 29 29 H 1.09000 * 109.47632 * 299.99896 * 1 2 3 30 30 H 1.08997 * 109.47362 * 60.00421 * 1 2 3 31 31 H 1.09005 * 109.47121 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47123 * 240.00054 * 2 1 3 33 33 H 1.09005 * 109.46957 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47501 * 300.00306 * 3 2 1 35 35 H 1.08998 * 109.47320 * 60.00175 * 3 2 1 36 36 H 0.97000 * 120.00479 * 354.86518 * 8 7 5 37 37 H 1.09001 * 109.47568 * 29.99434 * 13 4 2 38 38 H 1.08997 * 109.47661 * 150.00019 * 13 4 2 39 39 H 1.08998 * 109.46698 * 299.99604 * 14 13 4 40 40 H 1.08997 * 109.46941 * 59.99513 * 14 13 4 41 41 H 1.08998 * 109.47219 * 299.99452 * 15 14 13 42 42 H 1.08993 * 109.47054 * 60.00011 * 15 14 13 43 43 H 0.97002 * 120.00355 * 359.97438 * 16 15 14 44 44 H 1.09000 * 109.49802 * 290.48531 * 21 19 17 45 45 H 1.09008 * 109.49669 * 50.58421 * 21 19 17 46 46 H 1.09001 * 109.72037 * 289.06012 * 22 21 19 47 47 H 1.08996 * 109.77392 * 168.40566 * 22 21 19 48 48 H 1.08005 * 126.46775 * 180.02562 * 26 25 24 49 49 H 1.08997 * 109.59597 * 43.15813 * 28 27 26 50 50 H 1.09000 * 109.71900 * 282.77737 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.6969 -1.8737 1.0746 6 1 2.6777 -2.5925 1.8805 7 6 3.4094 -2.1493 -0.0844 8 7 3.4808 -3.3837 -0.5351 9 14 4.2670 -0.7680 -1.0042 10 1 3.3381 -0.1909 -2.0089 11 1 5.4695 -1.3030 -1.6918 12 1 4.6750 0.2881 -0.0433 13 6 1.7807 -0.1154 2.5224 14 6 2.9428 0.8082 2.8935 15 6 2.6942 1.4094 4.2783 16 7 3.8072 2.2932 4.6338 17 6 3.8049 2.9369 5.8180 18 8 2.8811 2.7848 6.5890 19 6 4.9495 3.8464 6.1834 20 1 5.8777 3.2751 6.1951 21 6 4.7022 4.4451 7.5711 22 6 5.9666 5.1770 8.0407 23 6 6.4314 6.0755 6.9224 24 7 7.2713 7.0641 6.9754 25 7 7.4000 7.5823 5.8020 26 6 6.6430 6.9400 4.9499 27 7 6.0108 5.9688 5.6365 28 6 5.0566 4.9732 5.1492 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6765 1.9564 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 3.0995 -4.1113 -0.0192 37 1 0.8524 0.4559 2.5097 38 1 1.7042 -0.9164 3.2575 39 1 3.8710 0.2369 2.9062 40 1 3.0192 1.6093 2.1583 41 1 1.7661 1.9807 4.2651 42 1 2.6176 0.6085 5.0136 43 1 4.5462 2.4146 4.0173 44 1 3.8717 5.1494 7.5207 45 1 4.4613 3.6474 8.2738 46 1 6.7449 4.4516 8.2776 47 1 5.7402 5.7751 8.9233 48 1 6.5443 7.1486 3.8948 49 1 5.4054 4.5663 4.2001 50 1 4.0797 5.4367 5.0112 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567653456.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:48 Heat of formation + Delta-G solvation = 55.936177 kcal Electronic energy + Delta-G solvation = -29244.275216 eV Core-core repulsion = 25308.372902 eV Total energy + Delta-G solvation = -3935.902314 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.66591 -40.36955 -37.58385 -37.13785 -35.40868 -34.03782 -32.44656 -32.31774 -31.38193 -29.78690 -29.25027 -26.67011 -26.03194 -25.17576 -23.68245 -22.66180 -22.55165 -21.37033 -21.04213 -19.92111 -19.45475 -17.90033 -17.41655 -17.38389 -16.65978 -16.11515 -15.99843 -15.66782 -15.17941 -14.86073 -14.77116 -14.57544 -14.31196 -14.19944 -13.63731 -13.54748 -13.20739 -12.78291 -12.76994 -12.44015 -12.24325 -12.08946 -11.96765 -11.88601 -11.75940 -11.55991 -11.51336 -11.44206 -10.96372 -10.91535 -10.71051 -10.56907 -10.56088 -10.18343 -10.11806 -9.80291 -9.70510 -9.53206 -9.30190 -9.25979 -8.37516 -7.21507 -6.37688 -3.33668 1.45078 1.92951 2.27409 2.54462 2.83181 3.31652 3.39993 3.58115 3.61721 3.85916 3.93401 4.00078 4.29625 4.46564 4.47909 4.50569 4.63461 4.72985 4.78111 4.93724 5.05686 5.13413 5.25143 5.26267 5.44047 5.46749 5.51895 5.58901 5.60292 5.65845 5.78750 5.81586 5.89336 5.98475 6.03729 6.11804 6.19289 6.30130 6.34247 6.36257 6.43471 6.52222 6.60215 6.77318 6.91289 6.99514 7.19983 7.86494 8.01383 8.37944 8.38817 8.98436 9.59336 10.15273 10.98189 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015989 B = 0.002416 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.832836 B =11584.801248 C =12205.763200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 C -0.176 4.176 4 N -0.593 5.593 5 C -0.360 4.360 6 H 0.064 0.936 7 C -0.007 4.007 8 N -0.902 5.902 9 Si 1.048 2.952 10 H -0.290 1.290 11 H -0.300 1.300 12 H -0.285 1.285 13 C 0.154 3.846 14 C -0.161 4.161 15 C 0.119 3.881 16 N -0.723 5.723 17 C 0.519 3.481 18 O -0.530 6.530 19 C -0.125 4.125 20 H 0.112 0.888 21 C -0.107 4.107 22 C -0.035 4.035 23 C 0.178 3.822 24 N -0.293 5.293 25 N -0.301 5.301 26 C 0.156 3.844 27 N -0.472 5.472 28 C 0.114 3.886 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.266 0.734 37 H 0.041 0.959 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.400 0.600 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.106 0.894 48 H 0.221 0.779 49 H 0.104 0.896 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.454 16.603 10.932 19.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.044 3.956 3 C -0.234 4.234 4 N -0.314 5.314 5 C -0.488 4.488 6 H 0.082 0.918 7 C -0.211 4.211 8 N -0.540 5.540 9 Si 0.880 3.120 10 H -0.218 1.218 11 H -0.228 1.228 12 H -0.211 1.211 13 C 0.026 3.974 14 C -0.201 4.201 15 C -0.005 4.005 16 N -0.374 5.374 17 C 0.303 3.697 18 O -0.406 6.406 19 C -0.147 4.147 20 H 0.130 0.870 21 C -0.145 4.145 22 C -0.074 4.074 23 C -0.090 4.090 24 N -0.132 5.132 25 N -0.140 5.140 26 C -0.131 4.131 27 N -0.164 5.164 28 C -0.010 4.010 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.234 0.766 44 H 0.098 0.902 45 H 0.117 0.883 46 H 0.116 0.884 47 H 0.124 0.876 48 H 0.237 0.763 49 H 0.122 0.878 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.622 17.776 10.641 20.883 hybrid contribution -1.273 -1.145 0.244 1.730 sum 1.349 16.631 10.886 19.922 Atomic orbital electron populations 1.22237 0.98408 1.01340 0.99704 1.20688 0.92219 0.91293 0.91436 1.22612 1.01540 0.98715 1.00570 1.44247 1.63705 1.24083 0.99337 1.20023 1.29263 0.93100 1.06445 0.91847 1.26068 0.97233 1.01158 0.96641 1.70921 1.47848 1.00661 1.34537 0.84119 0.76929 0.75469 0.75510 1.21849 1.22801 1.21139 1.20701 0.93692 0.94367 0.88598 1.22780 1.03543 1.00507 0.93285 1.21559 0.88411 0.92622 0.97894 1.46242 1.25359 1.47102 1.18697 1.20047 0.86990 0.80803 0.81872 1.90744 1.36145 1.63940 1.49786 1.21721 1.00222 0.95765 0.96952 0.86993 1.21563 0.97257 1.01129 0.94548 1.20295 0.97669 0.95999 0.93473 1.24888 0.98074 0.99569 0.86428 1.74088 1.16027 1.07763 1.15333 1.74507 1.19984 1.23430 0.96095 1.26333 0.95717 0.89726 1.01352 1.46132 1.34709 1.26425 1.09127 1.21945 0.93098 0.87916 0.98010 0.93747 0.93893 0.92688 0.90238 0.92546 0.93378 0.92844 0.92315 0.94043 0.93377 0.91133 0.91529 0.91673 0.91475 0.76567 0.90246 0.88278 0.88377 0.87604 0.76308 0.87764 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.27 37.16 0.34 -2.39 16 2 C 0.15 3.00 2.19 -67.93 -0.15 2.85 16 3 C -0.18 -2.91 7.32 37.16 0.27 -2.64 16 4 N -0.59 -12.79 2.16 -165.66 -0.36 -13.15 16 5 C -0.36 -9.38 9.74 -15.06 -0.15 -9.53 16 6 H 0.06 1.79 8.06 -52.48 -0.42 1.37 16 7 C -0.01 -0.19 4.93 -17.43 -0.09 -0.28 16 8 N -0.90 -26.62 13.70 55.49 0.76 -25.86 16 9 Si 1.05 24.43 24.18 -169.99 -4.11 20.32 16 10 H -0.29 -6.43 6.48 56.52 0.37 -6.06 16 11 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.28 -6.09 6.24 56.52 0.35 -5.74 16 13 C 0.15 2.70 4.93 -4.04 -0.02 2.68 16 14 C -0.16 -2.32 5.35 -26.73 -0.14 -2.46 16 15 C 0.12 1.42 5.67 -4.04 -0.02 1.39 16 16 N -0.72 -6.73 5.46 -60.29 -0.33 -7.05 16 17 C 0.52 4.93 7.13 -10.98 -0.08 4.86 16 18 O -0.53 -7.11 15.83 5.56 0.09 -7.02 16 19 C -0.12 -0.79 2.54 -91.53 -0.23 -1.02 16 20 H 0.11 0.60 8.12 -51.93 -0.42 0.17 16 21 C -0.11 -0.69 4.68 -26.42 -0.12 -0.81 16 22 C -0.03 -0.22 6.33 -27.60 -0.17 -0.39 16 23 C 0.18 1.69 7.75 -155.31 -1.20 0.48 16 24 N -0.29 -3.73 12.21 32.75 0.40 -3.33 16 25 N -0.30 -3.76 12.23 29.59 0.36 -3.39 16 26 C 0.16 1.33 12.83 -90.42 -1.16 0.17 16 27 N -0.47 -3.67 3.11 -115.52 -0.36 -4.03 16 28 C 0.11 0.61 6.15 -4.00 -0.02 0.58 16 29 H 0.04 0.70 6.93 -51.93 -0.36 0.34 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.82 4.24 -51.93 -0.22 1.60 16 33 H 0.06 0.99 5.12 -51.93 -0.27 0.72 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.78 6.39 -51.93 -0.33 0.45 16 36 H 0.27 7.82 8.73 -40.82 -0.36 7.47 16 37 H 0.04 0.66 6.72 -51.93 -0.35 0.31 16 38 H 0.05 0.88 8.04 -51.93 -0.42 0.46 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.07 0.94 5.40 -51.93 -0.28 0.66 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.40 2.87 8.12 -40.82 -0.33 2.54 16 44 H 0.08 0.57 8.12 -51.93 -0.42 0.15 16 45 H 0.10 0.67 7.79 -51.92 -0.40 0.26 16 46 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.22 0.92 8.06 -52.48 -0.42 0.50 16 49 H 0.10 0.35 7.87 -51.93 -0.41 -0.06 16 50 H 0.10 0.50 8.12 -51.93 -0.42 0.08 16 LS Contribution 386.47 15.07 5.82 5.82 Total: -1.00 -34.19 386.47 -8.77 -42.96 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -8.10 Total: 1.26 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -2.95 Total: -6.53 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 0.48 Total: -56.82 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: 0.09 Total: -7.02 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -4.11 Total: 20.32 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.19 -8.77 -42.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567653456.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.897 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds