Wall clock time and date at job start Tue Mar 31 2020 19:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46637 * 2 1 4 4 N 1.46497 * 109.47027 * 119.99579 * 2 1 3 5 5 C 1.36935 * 119.99612 * 113.75354 * 4 2 1 6 6 H 1.08005 * 120.00070 * 207.19973 * 5 4 2 7 7 C 1.38814 * 120.00159 * 27.20187 * 5 4 2 8 8 N 1.31613 * 120.00067 * 214.55226 * 7 5 4 9 9 Si 1.86803 * 119.99814 * 34.55537 * 7 5 4 10 10 H 1.48503 * 109.46874 * 270.00091 * 9 7 5 11 11 H 1.48499 * 109.47251 * 150.00346 * 9 7 5 12 12 H 1.48497 * 109.47251 * 29.99845 * 9 7 5 13 13 C 1.46494 * 120.00486 * 293.75621 * 4 2 1 14 14 C 1.53008 * 109.47020 * 270.00065 * 13 4 2 15 15 C 1.53001 * 109.46978 * 179.97438 * 14 13 4 16 16 N 1.46502 * 109.46773 * 179.97438 * 15 14 13 17 17 C 1.34781 * 119.99856 * 180.02562 * 16 15 14 18 18 O 1.21283 * 120.00022 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99874 * 180.02562 * 17 16 15 20 20 H 1.08998 * 109.45096 * 300.04652 * 19 17 16 21 21 C 1.53140 * 109.45345 * 180.11500 * 19 17 16 22 22 C 1.53458 * 109.30899 * 170.53713 * 21 19 17 23 23 C 1.50795 * 108.13246 * 48.71769 * 22 21 19 24 24 N 1.29830 * 128.52360 * 164.04061 * 23 22 21 25 25 N 1.28913 * 109.48040 * 180.14963 * 24 23 22 26 26 C 1.30831 * 109.73988 * 359.97438 * 25 24 23 27 27 N 1.34694 * 107.06957 * 359.97102 * 26 25 24 28 28 C 1.46263 * 128.84388 * 180.10814 * 27 26 25 29 29 H 1.09000 * 109.47632 * 299.99896 * 1 2 3 30 30 H 1.08997 * 109.47362 * 60.00421 * 1 2 3 31 31 H 1.09005 * 109.47121 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47123 * 240.00054 * 2 1 3 33 33 H 1.09005 * 109.46957 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47501 * 300.00306 * 3 2 1 35 35 H 1.08998 * 109.47320 * 60.00175 * 3 2 1 36 36 H 0.97000 * 120.00479 * 354.86518 * 8 7 5 37 37 H 1.09001 * 109.47568 * 29.99434 * 13 4 2 38 38 H 1.08997 * 109.47661 * 150.00019 * 13 4 2 39 39 H 1.08998 * 109.46698 * 299.99604 * 14 13 4 40 40 H 1.08997 * 109.46941 * 59.99513 * 14 13 4 41 41 H 1.08998 * 109.47219 * 299.99452 * 15 14 13 42 42 H 1.08993 * 109.47054 * 60.00011 * 15 14 13 43 43 H 0.97002 * 120.00355 * 359.97438 * 16 15 14 44 44 H 1.09000 * 109.49802 * 290.48531 * 21 19 17 45 45 H 1.09008 * 109.49669 * 50.58421 * 21 19 17 46 46 H 1.09001 * 109.72037 * 289.06012 * 22 21 19 47 47 H 1.08996 * 109.77392 * 168.40566 * 22 21 19 48 48 H 1.08005 * 126.46775 * 180.02562 * 26 25 24 49 49 H 1.08997 * 109.59597 * 43.15813 * 28 27 26 50 50 H 1.09000 * 109.71900 * 282.77737 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.6969 -1.8737 1.0746 6 1 2.6777 -2.5925 1.8805 7 6 3.4094 -2.1493 -0.0844 8 7 3.4808 -3.3837 -0.5351 9 14 4.2670 -0.7680 -1.0042 10 1 3.3381 -0.1909 -2.0089 11 1 5.4695 -1.3030 -1.6918 12 1 4.6750 0.2881 -0.0433 13 6 1.7807 -0.1154 2.5224 14 6 2.9428 0.8082 2.8935 15 6 2.6942 1.4094 4.2783 16 7 3.8072 2.2932 4.6338 17 6 3.8049 2.9369 5.8180 18 8 2.8811 2.7848 6.5890 19 6 4.9495 3.8464 6.1834 20 1 5.8777 3.2751 6.1951 21 6 4.7022 4.4451 7.5711 22 6 5.9666 5.1770 8.0407 23 6 6.4314 6.0755 6.9224 24 7 7.2713 7.0641 6.9754 25 7 7.4000 7.5823 5.8020 26 6 6.6430 6.9400 4.9499 27 7 6.0108 5.9688 5.6365 28 6 5.0566 4.9732 5.1492 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6765 1.9564 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 3.0995 -4.1113 -0.0192 37 1 0.8524 0.4559 2.5097 38 1 1.7042 -0.9164 3.2575 39 1 3.8710 0.2369 2.9062 40 1 3.0192 1.6093 2.1583 41 1 1.7661 1.9807 4.2651 42 1 2.6176 0.6085 5.0136 43 1 4.5462 2.4146 4.0173 44 1 3.8717 5.1494 7.5207 45 1 4.4613 3.6474 8.2738 46 1 6.7449 4.4516 8.2776 47 1 5.7402 5.7751 8.9233 48 1 6.5443 7.1486 3.8948 49 1 5.4054 4.5663 4.2001 50 1 4.0797 5.4367 5.0112 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567653456.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:47 Heat of formation + Delta-G solvation = 33.716154 kcal Electronic energy + Delta-G solvation = -29245.238749 eV Core-core repulsion = 25308.372902 eV Total energy + Delta-G solvation = -3936.865846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.31507 -41.13732 -39.00783 -37.88447 -36.41423 -34.62811 -34.29025 -33.50991 -32.23177 -31.03640 -30.09627 -27.99177 -27.18533 -25.94080 -24.65495 -23.90435 -23.30789 -22.57484 -21.88221 -21.16308 -20.42280 -19.22354 -18.50380 -18.04264 -17.32431 -17.30171 -16.89551 -16.73477 -16.22613 -15.89184 -15.48249 -15.39104 -15.25534 -15.06125 -14.87807 -14.85021 -14.48636 -14.34536 -13.77391 -13.42838 -13.34854 -13.10104 -13.02470 -12.89997 -12.81883 -12.64430 -12.53080 -12.36722 -12.26046 -12.07517 -12.03400 -11.59199 -11.46254 -11.38868 -11.34394 -11.13557 -11.07974 -10.98589 -10.37297 -10.23084 -10.12850 -9.10753 -8.45587 -5.39189 0.85428 1.33277 1.45436 1.56290 1.60182 1.75146 1.83730 2.08490 2.57513 3.02612 3.09775 3.30419 3.39421 3.45411 3.51630 3.84289 3.98782 4.03770 4.12373 4.16434 4.19445 4.26143 4.26409 4.41596 4.45956 4.55322 4.57151 4.63346 4.64622 4.74463 4.82462 4.87901 4.92981 4.95401 4.95942 4.96540 5.05110 5.07796 5.18941 5.19661 5.31414 5.35542 5.40352 5.55519 5.59545 5.90046 5.90157 6.33060 6.47682 7.00494 7.14424 7.69241 7.74407 8.18706 8.85184 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015989 B = 0.002416 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.832836 B =11584.801248 C =12205.763200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.138 3.862 3 C -0.168 4.168 4 N -0.605 5.605 5 C -0.340 4.340 6 H 0.023 0.977 7 C -0.064 4.064 8 N -0.945 5.945 9 Si 1.090 2.910 10 H -0.271 1.271 11 H -0.317 1.317 12 H -0.249 1.249 13 C 0.150 3.850 14 C -0.143 4.143 15 C 0.131 3.869 16 N -0.715 5.715 17 C 0.525 3.475 18 O -0.570 6.570 19 C -0.115 4.115 20 H 0.129 0.871 21 C -0.101 4.101 22 C -0.029 4.029 23 C 0.176 3.824 24 N -0.340 5.340 25 N -0.353 5.353 26 C 0.170 3.830 27 N -0.470 5.470 28 C 0.114 3.886 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.027 0.973 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.248 0.752 37 H 0.065 0.935 38 H 0.028 0.972 39 H 0.050 0.950 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.051 0.949 43 H 0.414 0.586 44 H 0.071 0.929 45 H 0.096 0.904 46 H 0.112 0.888 47 H 0.112 0.888 48 H 0.260 0.740 49 H 0.134 0.866 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.139 19.705 10.421 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.032 3.968 3 C -0.227 4.227 4 N -0.328 5.328 5 C -0.470 4.470 6 H 0.041 0.959 7 C -0.261 4.261 8 N -0.587 5.587 9 Si 0.916 3.084 10 H -0.197 1.197 11 H -0.246 1.246 12 H -0.174 1.174 13 C 0.024 3.976 14 C -0.183 4.183 15 C 0.006 3.994 16 N -0.366 5.366 17 C 0.311 3.689 18 O -0.449 6.449 19 C -0.136 4.136 20 H 0.146 0.854 21 C -0.140 4.140 22 C -0.069 4.069 23 C -0.093 4.093 24 N -0.179 5.179 25 N -0.191 5.191 26 C -0.119 4.119 27 N -0.161 5.161 28 C -0.008 4.008 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.251 0.749 44 H 0.090 0.910 45 H 0.114 0.886 46 H 0.130 0.870 47 H 0.130 0.870 48 H 0.275 0.725 49 H 0.152 0.848 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.296 20.931 10.154 23.377 hybrid contribution -1.319 -2.188 0.493 2.602 sum 0.977 18.742 10.647 21.578 Atomic orbital electron populations 1.22145 0.96562 1.00324 1.01978 1.20868 0.93735 0.93000 0.89199 1.22508 1.01064 0.96055 1.03033 1.44289 1.63441 1.23485 1.01584 1.19842 1.28208 0.94084 1.04818 0.95922 1.27242 0.98057 1.02214 0.98549 1.71067 1.50695 1.01387 1.35528 0.83628 0.75355 0.73752 0.75671 1.19738 1.24612 1.17379 1.20789 0.96091 0.94637 0.86097 1.22449 1.00770 0.99891 0.95158 1.21219 0.89622 0.92686 0.95843 1.46059 1.25085 1.46383 1.19108 1.20436 0.87012 0.80438 0.81049 1.90740 1.37932 1.65313 1.50936 1.21639 0.99278 0.95673 0.97060 0.85359 1.21492 0.96942 1.00761 0.94766 1.20378 0.97839 0.95843 0.92799 1.25322 0.97249 0.98980 0.87728 1.73983 1.18132 1.09547 1.16199 1.74400 1.22442 1.25455 0.96815 1.27055 0.93872 0.88541 1.02411 1.46248 1.34713 1.26615 1.08482 1.22144 0.93131 0.87018 0.98554 0.91767 0.91274 0.95414 0.93577 0.93195 0.90938 0.90440 0.94252 0.91637 0.95311 0.93154 0.89932 0.91030 0.93053 0.74911 0.91048 0.88587 0.86986 0.87015 0.72451 0.84795 0.87606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.83 9.27 71.98 0.67 -4.16 16 2 C 0.14 5.13 2.19 44.99 0.10 5.23 16 3 C -0.17 -4.72 7.32 71.98 0.53 -4.19 16 4 N -0.61 -25.48 2.16 -678.04 -1.46 -26.95 16 5 C -0.34 -18.14 9.74 84.03 0.82 -17.32 16 6 H 0.02 1.37 8.06 -2.91 -0.02 1.35 16 7 C -0.06 -3.57 4.93 84.86 0.42 -3.16 16 8 N -0.95 -58.29 13.70 21.65 0.30 -58.00 16 9 Si 1.09 48.73 24.18 68.60 1.66 50.39 16 10 H -0.27 -11.16 6.48 99.48 0.64 -10.51 16 11 H -0.32 -14.97 7.11 99.48 0.71 -14.26 16 12 H -0.25 -9.57 6.24 99.48 0.62 -8.95 16 13 C 0.15 4.98 4.93 86.38 0.43 5.40 16 14 C -0.14 -3.69 5.35 30.60 0.16 -3.52 16 15 C 0.13 2.74 5.67 86.38 0.49 3.23 16 16 N -0.71 -10.71 5.46 -463.06 -2.53 -13.24 16 17 C 0.52 8.40 7.13 87.66 0.63 9.02 16 18 O -0.57 -14.17 15.83 -3.04 -0.05 -14.22 16 19 C -0.11 -1.07 2.54 -11.39 -0.03 -1.09 16 20 H 0.13 0.86 8.12 -2.39 -0.02 0.84 16 21 C -0.10 -1.08 4.68 30.79 0.14 -0.94 16 22 C -0.03 -0.31 6.33 30.03 0.19 -0.12 16 23 C 0.18 3.04 7.75 138.14 1.07 4.11 16 24 N -0.34 -8.48 12.21 -50.29 -0.61 -9.10 16 25 N -0.35 -8.47 12.23 -60.31 -0.74 -9.21 16 26 C 0.17 2.42 12.83 180.28 2.31 4.73 16 27 N -0.47 -5.88 3.11 -519.39 -1.62 -7.50 16 28 C 0.11 0.74 6.15 86.53 0.53 1.27 16 29 H 0.06 1.78 6.93 -2.39 -0.02 1.76 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.05 2.04 4.24 -2.39 -0.01 2.03 16 33 H 0.05 1.47 5.12 -2.38 -0.01 1.46 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 1.79 6.39 -2.39 -0.02 1.78 16 36 H 0.25 15.54 8.73 -92.71 -0.81 14.73 16 37 H 0.07 1.86 6.72 -2.39 -0.02 1.85 16 38 H 0.03 1.05 8.04 -2.39 -0.02 1.03 16 39 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 1.91 5.40 -2.39 -0.01 1.89 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.41 4.04 8.12 -92.71 -0.75 3.29 16 44 H 0.07 0.89 8.12 -2.39 -0.02 0.87 16 45 H 0.10 1.13 7.79 -2.38 -0.02 1.11 16 46 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.26 1.11 8.06 -2.91 -0.02 1.08 16 49 H 0.13 0.13 7.87 -2.39 -0.02 0.11 16 50 H 0.11 0.62 8.12 -2.39 -0.02 0.60 16 Total: -1.00 -80.07 386.47 3.41 -76.65 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.01 Total: 12.68 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 8.45 Total: -1.52 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -6.66 Total: -123.98 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.05 Total: -14.22 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 1.66 Total: 50.39 kcal Total: -80.07 3.41 -76.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567653456.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.369 kcal (2) G-P(sol) polarization free energy of solvation -80.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds