Wall clock time and date at job start Tue Mar 31 2020 18:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47153 * 2 1 4 4 C 1.53001 * 109.47366 * 240.00106 * 2 1 3 5 5 N 1.46501 * 109.47134 * 120.00067 * 2 1 3 6 6 C 1.34814 * 126.59531 * 74.99911 * 5 2 1 7 7 C 1.36596 * 106.83878 * 180.02562 * 6 5 2 8 8 C 1.47530 * 125.77070 * 179.97438 * 7 6 5 9 9 O 1.21596 * 119.99775 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00128 * 180.02562 * 8 7 6 11 11 C 1.46494 * 119.99984 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47157 * 175.61880 * 11 10 8 13 13 N 1.46498 * 110.54148 * 57.61957 * 12 11 10 14 14 C 1.36933 * 120.00105 * 59.23302 * 13 12 11 15 15 H 1.07999 * 120.00030 * 5.42936 * 14 13 12 16 16 C 1.38808 * 119.99856 * 185.43780 * 14 13 12 17 17 N 1.31625 * 119.99805 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 120.00389 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47311 * 89.99990 * 18 16 14 20 20 H 1.48497 * 109.47367 * 210.00429 * 18 16 14 21 21 H 1.48501 * 109.47143 * 330.00506 * 18 16 14 22 22 C 1.54891 * 110.48661 * 180.23354 * 12 11 10 23 23 C 1.54891 * 102.75035 * 156.61710 * 22 12 11 24 24 C 1.54273 * 104.19570 * 322.06047 * 23 22 12 25 25 C 1.53872 * 106.59593 * 23.60465 * 24 23 22 26 26 N 1.34398 * 108.46005 * 0.24532 * 7 6 5 27 27 N 1.28762 * 109.52336 * 359.58541 * 26 7 6 28 28 H 1.09002 * 109.46733 * 299.99691 * 1 2 3 29 29 H 1.08999 * 109.46972 * 59.99857 * 1 2 3 30 30 H 1.08996 * 109.46965 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47205 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47299 * 299.99943 * 3 2 1 33 33 H 1.09002 * 109.47049 * 60.00502 * 3 2 1 34 34 H 1.09003 * 109.46777 * 300.00093 * 4 2 1 35 35 H 1.08999 * 109.47044 * 60.00082 * 4 2 1 36 36 H 1.09000 * 109.47064 * 180.02562 * 4 2 1 37 37 H 1.07998 * 126.57879 * 0.02562 * 6 5 2 38 38 H 0.96997 * 119.99888 * 0.02562 * 10 8 7 39 39 H 1.09001 * 109.47434 * 55.61418 * 11 10 8 40 40 H 1.09000 * 109.47261 * 295.61518 * 11 10 8 41 41 H 0.96997 * 119.99859 * 239.22503 * 13 12 11 42 42 H 0.97005 * 119.99806 * 179.97438 * 17 16 14 43 43 H 1.08993 * 110.75727 * 274.93225 * 22 12 11 44 44 H 1.09000 * 110.75921 * 38.30588 * 22 12 11 45 45 H 1.08998 * 110.48936 * 203.38272 * 23 22 12 46 46 H 1.08998 * 110.48872 * 80.73186 * 23 22 12 47 47 H 1.09003 * 110.02934 * 264.32397 * 24 23 22 48 48 H 1.08997 * 110.03462 * 142.89377 * 24 23 22 49 49 H 1.09002 * 110.03554 * 240.71641 * 25 24 23 50 50 H 1.09009 * 110.02819 * 119.29099 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0221 -2.0216 1.4105 7 6 2.5628 -2.2215 2.6489 8 6 2.7637 -3.5293 3.3013 9 8 2.4366 -4.5509 2.7288 10 7 3.3099 -3.5917 4.5319 11 6 3.5099 -4.8904 5.1795 12 6 4.2396 -4.6902 6.5093 13 7 3.4843 -3.7849 7.3788 14 6 2.2052 -4.1017 7.7512 15 1 1.7842 -5.0578 7.4772 16 6 1.4497 -3.1940 8.4806 17 7 0.2201 -3.4984 8.8381 18 14 2.1780 -1.5406 8.9549 19 1 1.8875 -0.5478 7.8896 20 1 1.5779 -1.0840 10.2342 21 1 3.6479 -1.6756 9.1181 22 6 4.4688 -6.0513 7.2121 23 6 5.6755 -5.7589 8.1381 24 6 6.5753 -4.8243 7.3033 25 6 5.6623 -4.1449 6.2677 26 7 2.8752 -1.0248 3.1750 27 7 2.5711 -0.0944 2.3385 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6768 -0.2074 -2.1392 36 1 3.1301 -0.7216 -1.2490 37 1 1.6660 -2.7836 0.7331 38 1 3.5705 -2.7767 4.9887 39 1 4.1064 -5.5319 4.5307 40 1 2.5425 -5.3579 5.3628 41 1 3.8903 -2.9611 7.6909 42 1 -0.3078 -2.8642 9.3482 43 1 3.5940 -6.3366 7.7962 44 1 4.7182 -6.8243 6.4852 45 1 6.2036 -6.6814 8.3794 46 1 5.3455 -5.2579 9.0481 47 1 7.3476 -5.4036 6.7972 48 1 7.0330 -4.0734 7.9473 49 1 5.9915 -4.3944 5.2590 50 1 5.6770 -3.0641 6.4091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568237073.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:59 Heat of formation + Delta-G solvation = 60.262214 kcal Electronic energy + Delta-G solvation = -29926.556612 eV Core-core repulsion = 25990.841889 eV Total energy + Delta-G solvation = -3935.714723 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.21514 -39.27486 -38.11651 -37.51076 -34.10065 -33.24407 -32.04615 -31.06927 -30.59259 -28.35277 -28.25948 -27.97160 -27.83852 -24.83820 -23.70290 -23.13579 -22.46438 -20.73921 -20.16266 -19.44797 -18.67020 -17.55681 -17.49361 -16.36845 -16.09967 -15.69104 -15.25212 -14.75670 -14.67218 -14.57096 -14.47665 -14.23368 -14.05225 -13.73305 -13.08874 -13.05357 -12.93344 -12.80907 -12.71210 -12.52834 -12.32486 -12.19603 -12.05553 -11.82625 -11.64940 -11.50594 -11.19847 -11.08574 -10.84083 -10.73135 -10.63407 -10.43358 -10.34383 -10.25420 -10.04194 -9.88933 -9.71741 -9.48653 -9.20728 -8.87851 -8.39741 -7.25025 -5.72500 -3.09055 1.19940 1.92313 1.93125 3.41577 3.45489 3.51222 3.57073 3.70475 3.95443 4.17871 4.28162 4.31495 4.63652 4.80367 4.89499 4.94539 5.05223 5.09799 5.10328 5.12768 5.14104 5.17524 5.23160 5.28395 5.35346 5.44449 5.50020 5.62099 5.65822 5.73515 5.78184 5.91562 5.95783 5.96939 6.11834 6.20249 6.24937 6.34003 6.40062 6.42352 6.53888 6.60995 6.75124 6.81726 6.97867 7.07111 7.91424 8.03704 8.18040 8.46220 8.65341 9.24109 9.96387 10.15142 11.45443 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012295 B = 0.003400 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.873480 B = 8233.266630 C = 9315.589862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.170 3.830 3 C -0.148 4.148 4 C -0.162 4.162 5 N -0.355 5.355 6 C 0.088 3.912 7 C -0.092 4.092 8 C 0.598 3.402 9 O -0.554 6.554 10 N -0.685 5.685 11 C 0.121 3.879 12 C 0.194 3.806 13 N -0.735 5.735 14 C -0.237 4.237 15 H 0.091 0.909 16 C 0.010 3.990 17 N -0.932 5.932 18 Si 0.878 3.122 19 H -0.283 1.283 20 H -0.294 1.294 21 H -0.277 1.277 22 C -0.129 4.129 23 C -0.114 4.114 24 C -0.119 4.119 25 C -0.127 4.127 26 N -0.202 5.202 27 N -0.067 5.067 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.199 0.801 38 H 0.408 0.592 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.363 0.637 42 H 0.258 0.742 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.068 0.932 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.066 0.934 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.102 5.325 -19.830 21.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.087 3.913 3 C -0.206 4.206 4 C -0.220 4.220 5 N -0.142 5.142 6 C -0.069 4.069 7 C -0.231 4.231 8 C 0.381 3.619 9 O -0.433 6.433 10 N -0.333 5.333 11 C -0.005 4.005 12 C 0.102 3.898 13 N -0.378 5.378 14 C -0.367 4.367 15 H 0.109 0.891 16 C -0.186 4.186 17 N -0.579 5.579 18 Si 0.709 3.291 19 H -0.209 1.209 20 H -0.220 1.220 21 H -0.204 1.204 22 C -0.169 4.169 23 C -0.152 4.152 24 C -0.157 4.157 25 C -0.165 4.165 26 N -0.076 5.076 27 N -0.047 5.047 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.216 0.784 38 H 0.244 0.756 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.197 0.803 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.084 0.916 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.027 5.849 -19.520 21.555 hybrid contribution 0.027 0.803 0.174 0.822 sum 7.054 6.653 -19.346 21.640 Atomic orbital electron populations 1.22296 0.91928 1.03800 1.04011 1.21046 0.95201 0.94060 0.80949 1.21986 1.02486 0.92354 1.03771 1.22292 1.02618 1.01333 0.95779 1.50794 1.42612 1.05240 1.15504 1.23184 0.98717 0.86837 0.98159 1.21610 1.12185 0.93983 0.95342 1.16733 0.77917 0.85555 0.81659 1.90758 1.52719 1.34456 1.65324 1.45549 1.60785 1.11162 1.15830 1.21877 1.01463 0.83708 0.93458 1.20575 0.89249 0.91241 0.88708 1.42810 1.14342 1.23035 1.57581 1.18923 0.87480 1.01851 1.28447 0.89086 1.24625 0.95654 0.97663 1.00680 1.69703 1.08807 1.36093 1.43341 0.86649 0.78410 0.86060 0.77986 1.20915 1.22025 1.20376 1.22854 0.98669 0.96940 0.98422 1.22215 0.95895 0.98140 0.98955 1.22076 0.97692 0.98487 0.97462 1.22430 0.95009 1.00189 0.98903 1.74687 1.13006 0.98073 1.21822 1.81946 1.15961 1.17147 0.89615 0.91116 0.89755 0.91287 0.91270 0.90264 0.90578 0.91103 0.89523 0.91186 0.78406 0.75601 0.92228 0.90873 0.80334 0.93194 0.90158 0.92511 0.92818 0.91319 0.92566 0.92543 0.91556 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 8.74 37.16 0.32 -0.75 16 2 C 0.17 1.30 1.25 -131.82 -0.16 1.14 16 3 C -0.15 -1.03 8.11 37.16 0.30 -0.73 16 4 C -0.16 -0.86 8.30 37.16 0.31 -0.55 16 5 N -0.35 -4.22 3.44 -48.35 -0.17 -4.38 16 6 C 0.09 1.13 10.43 -16.83 -0.18 0.96 16 7 C -0.09 -1.53 6.99 -83.55 -0.58 -2.11 16 8 C 0.60 11.23 7.82 -12.47 -0.10 11.13 16 9 O -0.55 -11.29 16.86 5.28 0.09 -11.20 16 10 N -0.69 -12.89 5.24 -61.35 -0.32 -13.21 16 11 C 0.12 2.25 4.30 -4.05 -0.02 2.24 16 12 C 0.19 3.53 0.52 -130.16 -0.07 3.46 16 13 N -0.73 -16.27 4.50 -45.70 -0.21 -16.47 16 14 C -0.24 -6.36 9.07 -15.06 -0.14 -6.50 16 15 H 0.09 2.65 7.35 -52.49 -0.39 2.27 16 16 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 17 N -0.93 -29.13 13.97 55.49 0.78 -28.36 16 18 Si 0.88 22.18 27.79 -169.99 -4.72 17.45 16 19 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 21 H -0.28 -6.53 6.45 56.52 0.36 -6.17 16 22 C -0.13 -2.20 5.89 -24.74 -0.15 -2.35 16 23 C -0.11 -1.76 6.79 -25.07 -0.17 -1.93 16 24 C -0.12 -1.67 6.80 -25.61 -0.17 -1.85 16 25 C -0.13 -1.95 5.70 -25.61 -0.15 -2.09 16 26 N -0.20 -3.55 12.04 32.85 0.40 -3.16 16 27 N -0.07 -1.04 12.91 60.35 0.78 -0.26 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 34 H 0.07 0.35 7.44 -51.93 -0.39 -0.03 16 35 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.20 1.96 7.63 -52.49 -0.40 1.56 16 38 H 0.41 7.78 7.75 -40.82 -0.32 7.46 16 39 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 40 H 0.07 1.58 7.52 -51.93 -0.39 1.18 16 41 H 0.36 8.10 5.32 -40.82 -0.22 7.88 16 42 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 43 H 0.08 1.58 7.17 -51.93 -0.37 1.21 16 44 H 0.06 0.86 8.06 -51.93 -0.42 0.44 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.07 0.93 7.80 -51.93 -0.40 0.53 16 50 H 0.06 0.98 7.75 -51.92 -0.40 0.58 16 LS Contribution 401.45 15.07 6.05 6.05 Total: -1.00 -33.84 401.45 -6.73 -40.57 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -8.36 Total: 12.74 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.04 Total: 0.24 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: 1.26 Total: -65.84 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.72 Total: 17.45 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.84 -6.73 -40.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568237073.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.829 kcal (2) G-P(sol) polarization free energy of solvation -33.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds