Wall clock time and date at job start Tue Mar 31 2020 18:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47153 * 2 1 4 4 C 1.53001 * 109.47366 * 240.00106 * 2 1 3 5 5 N 1.46501 * 109.47134 * 120.00067 * 2 1 3 6 6 C 1.34814 * 126.59531 * 74.99911 * 5 2 1 7 7 C 1.36596 * 106.83878 * 180.02562 * 6 5 2 8 8 C 1.47530 * 125.77070 * 179.97438 * 7 6 5 9 9 O 1.21596 * 119.99775 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00128 * 180.02562 * 8 7 6 11 11 C 1.46494 * 119.99984 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47157 * 175.61880 * 11 10 8 13 13 N 1.46498 * 110.54148 * 57.61957 * 12 11 10 14 14 C 1.36933 * 120.00105 * 59.23302 * 13 12 11 15 15 H 1.07999 * 120.00030 * 5.42936 * 14 13 12 16 16 C 1.38808 * 119.99856 * 185.43780 * 14 13 12 17 17 N 1.31625 * 119.99805 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 120.00389 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47311 * 89.99990 * 18 16 14 20 20 H 1.48497 * 109.47367 * 210.00429 * 18 16 14 21 21 H 1.48501 * 109.47143 * 330.00506 * 18 16 14 22 22 C 1.54891 * 110.48661 * 180.23354 * 12 11 10 23 23 C 1.54891 * 102.75035 * 156.61710 * 22 12 11 24 24 C 1.54273 * 104.19570 * 322.06047 * 23 22 12 25 25 C 1.53872 * 106.59593 * 23.60465 * 24 23 22 26 26 N 1.34398 * 108.46005 * 0.24532 * 7 6 5 27 27 N 1.28762 * 109.52336 * 359.58541 * 26 7 6 28 28 H 1.09002 * 109.46733 * 299.99691 * 1 2 3 29 29 H 1.08999 * 109.46972 * 59.99857 * 1 2 3 30 30 H 1.08996 * 109.46965 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47205 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47299 * 299.99943 * 3 2 1 33 33 H 1.09002 * 109.47049 * 60.00502 * 3 2 1 34 34 H 1.09003 * 109.46777 * 300.00093 * 4 2 1 35 35 H 1.08999 * 109.47044 * 60.00082 * 4 2 1 36 36 H 1.09000 * 109.47064 * 180.02562 * 4 2 1 37 37 H 1.07998 * 126.57879 * 0.02562 * 6 5 2 38 38 H 0.96997 * 119.99888 * 0.02562 * 10 8 7 39 39 H 1.09001 * 109.47434 * 55.61418 * 11 10 8 40 40 H 1.09000 * 109.47261 * 295.61518 * 11 10 8 41 41 H 0.96997 * 119.99859 * 239.22503 * 13 12 11 42 42 H 0.97005 * 119.99806 * 179.97438 * 17 16 14 43 43 H 1.08993 * 110.75727 * 274.93225 * 22 12 11 44 44 H 1.09000 * 110.75921 * 38.30588 * 22 12 11 45 45 H 1.08998 * 110.48936 * 203.38272 * 23 22 12 46 46 H 1.08998 * 110.48872 * 80.73186 * 23 22 12 47 47 H 1.09003 * 110.02934 * 264.32397 * 24 23 22 48 48 H 1.08997 * 110.03462 * 142.89377 * 24 23 22 49 49 H 1.09002 * 110.03554 * 240.71641 * 25 24 23 50 50 H 1.09009 * 110.02819 * 119.29099 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0221 -2.0216 1.4105 7 6 2.5628 -2.2215 2.6489 8 6 2.7637 -3.5293 3.3013 9 8 2.4366 -4.5509 2.7288 10 7 3.3099 -3.5917 4.5319 11 6 3.5099 -4.8904 5.1795 12 6 4.2396 -4.6902 6.5093 13 7 3.4843 -3.7849 7.3788 14 6 2.2052 -4.1017 7.7512 15 1 1.7842 -5.0578 7.4772 16 6 1.4497 -3.1940 8.4806 17 7 0.2201 -3.4984 8.8381 18 14 2.1780 -1.5406 8.9549 19 1 1.8875 -0.5478 7.8896 20 1 1.5779 -1.0840 10.2342 21 1 3.6479 -1.6756 9.1181 22 6 4.4688 -6.0513 7.2121 23 6 5.6755 -5.7589 8.1381 24 6 6.5753 -4.8243 7.3033 25 6 5.6623 -4.1449 6.2677 26 7 2.8752 -1.0248 3.1750 27 7 2.5711 -0.0944 2.3385 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6768 -0.2074 -2.1392 36 1 3.1301 -0.7216 -1.2490 37 1 1.6660 -2.7836 0.7331 38 1 3.5705 -2.7767 4.9887 39 1 4.1064 -5.5319 4.5307 40 1 2.5425 -5.3579 5.3628 41 1 3.8903 -2.9611 7.6909 42 1 -0.3078 -2.8642 9.3482 43 1 3.5940 -6.3366 7.7962 44 1 4.7182 -6.8243 6.4852 45 1 6.2036 -6.6814 8.3794 46 1 5.3455 -5.2579 9.0481 47 1 7.3476 -5.4036 6.7972 48 1 7.0330 -4.0734 7.9473 49 1 5.9915 -4.3944 5.2590 50 1 5.6770 -3.0641 6.4091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568237073.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:58 Heat of formation + Delta-G solvation = 35.966096 kcal Electronic energy + Delta-G solvation = -29927.610171 eV Core-core repulsion = 25990.841889 eV Total energy + Delta-G solvation = -3936.768281 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.32077 -40.74271 -39.52252 -38.30050 -35.59360 -35.14611 -33.07102 -32.80939 -31.97189 -29.84198 -29.55536 -28.46072 -28.43919 -26.30142 -25.03062 -24.69894 -23.78392 -21.86471 -21.39152 -20.74667 -20.15459 -19.49507 -18.63865 -17.42345 -17.23021 -17.10692 -16.65424 -16.26658 -15.90167 -15.87222 -15.68314 -15.30383 -15.06765 -14.94110 -14.79460 -14.51790 -14.08598 -13.74050 -13.66127 -13.40987 -13.32967 -13.31115 -13.19538 -13.01657 -12.79741 -12.47040 -12.44769 -12.35380 -12.31643 -12.00207 -11.97141 -11.91582 -11.86315 -11.63323 -11.45344 -11.28877 -11.23343 -11.17512 -10.90457 -10.42063 -9.91298 -9.27131 -7.96630 -5.28962 0.14160 0.62530 1.03912 1.36802 1.42021 1.46146 2.17647 2.32567 2.51118 3.18492 3.24473 3.34397 3.53921 3.63284 3.71938 3.75482 3.77342 3.89217 3.95581 4.06746 4.18056 4.42042 4.51729 4.56071 4.58601 4.59119 4.66030 4.66921 4.71700 4.77398 4.77835 4.80544 4.86564 4.96898 5.05502 5.05800 5.10458 5.17608 5.20593 5.22500 5.25435 5.40370 5.46219 5.52549 5.54754 5.67966 5.87069 6.27495 6.50070 6.91707 7.14203 7.17692 7.89582 8.07718 9.25104 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012295 B = 0.003400 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.873480 B = 8233.266630 C = 9315.589862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.157 3.843 3 C -0.147 4.147 4 C -0.158 4.158 5 N -0.338 5.338 6 C 0.107 3.893 7 C -0.122 4.122 8 C 0.596 3.404 9 O -0.576 6.576 10 N -0.688 5.688 11 C 0.127 3.873 12 C 0.185 3.815 13 N -0.734 5.734 14 C -0.201 4.201 15 H 0.057 0.943 16 C -0.061 4.061 17 N -0.986 5.986 18 Si 0.943 3.057 19 H -0.289 1.289 20 H -0.303 1.303 21 H -0.247 1.247 22 C -0.128 4.128 23 C -0.112 4.112 24 C -0.112 4.112 25 C -0.121 4.121 26 N -0.233 5.233 27 N -0.085 5.085 28 H 0.049 0.951 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.113 0.887 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.062 0.938 37 H 0.231 0.769 38 H 0.407 0.593 39 H 0.081 0.919 40 H 0.034 0.966 41 H 0.365 0.635 42 H 0.252 0.748 43 H 0.043 0.957 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.044 0.956 47 H 0.084 0.916 48 H 0.064 0.936 49 H 0.085 0.915 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.392 6.135 -22.539 25.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.076 3.924 3 C -0.204 4.204 4 C -0.216 4.216 5 N -0.124 5.124 6 C -0.052 4.052 7 C -0.262 4.262 8 C 0.381 3.619 9 O -0.456 6.456 10 N -0.336 5.336 11 C 0.002 3.998 12 C 0.095 3.905 13 N -0.377 5.377 14 C -0.333 4.333 15 H 0.075 0.925 16 C -0.252 4.252 17 N -0.637 5.637 18 Si 0.772 3.228 19 H -0.216 1.216 20 H -0.230 1.230 21 H -0.172 1.172 22 C -0.168 4.168 23 C -0.149 4.149 24 C -0.150 4.150 25 C -0.159 4.159 26 N -0.106 5.106 27 N -0.065 5.065 28 H 0.068 0.932 29 H 0.136 0.864 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.135 0.865 36 H 0.082 0.918 37 H 0.247 0.753 38 H 0.243 0.757 39 H 0.099 0.901 40 H 0.052 0.948 41 H 0.199 0.801 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.100 0.900 45 H 0.096 0.904 46 H 0.063 0.937 47 H 0.103 0.897 48 H 0.082 0.918 49 H 0.104 0.896 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.387 6.675 -22.262 25.066 hybrid contribution -0.736 0.483 0.831 1.211 sum 8.651 7.158 -21.431 24.195 Atomic orbital electron populations 1.22334 0.90804 1.04061 1.04622 1.21643 0.96042 0.94506 0.80171 1.22022 1.01932 0.91996 1.04494 1.22335 1.02230 1.01803 0.95249 1.51217 1.40673 1.05021 1.15531 1.23590 0.96679 0.87763 0.97121 1.21510 1.14767 0.93026 0.96937 1.17027 0.77143 0.86255 0.81437 1.90728 1.53632 1.35433 1.65803 1.45586 1.61048 1.10942 1.16038 1.21783 0.99778 0.84029 0.94242 1.20881 0.90625 0.91429 0.87533 1.42778 1.12968 1.23822 1.58105 1.18792 0.88901 0.99815 1.25753 0.92501 1.25324 0.96172 1.01548 1.02163 1.69881 1.10737 1.37456 1.45654 0.85586 0.79287 0.81280 0.76673 1.21647 1.23001 1.17152 1.22818 0.98283 0.96800 0.98872 1.22191 0.95446 0.99558 0.97721 1.22066 0.97527 0.98468 0.96932 1.22401 0.92667 1.00207 1.00606 1.74648 1.14262 0.98563 1.23100 1.81845 1.16735 1.17183 0.90699 0.93224 0.86428 0.91216 0.92147 0.86877 0.92514 0.90459 0.86477 0.91840 0.75318 0.75739 0.90103 0.94780 0.80066 0.93863 0.93826 0.90035 0.90351 0.93668 0.89719 0.91750 0.89641 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 8.74 71.98 0.63 -1.09 16 2 C 0.16 2.03 1.25 3.60 0.00 2.03 16 3 C -0.15 -1.74 8.11 71.98 0.58 -1.16 16 4 C -0.16 -1.13 8.30 71.98 0.60 -0.53 16 5 N -0.34 -7.63 3.44 -306.90 -1.06 -8.68 16 6 C 0.11 2.63 10.43 83.85 0.87 3.50 16 7 C -0.12 -4.08 6.99 40.82 0.29 -3.80 16 8 C 0.60 22.60 7.82 86.69 0.68 23.28 16 9 O -0.58 -23.56 16.86 -4.02 -0.07 -23.62 16 10 N -0.69 -26.16 5.24 -466.29 -2.44 -28.61 16 11 C 0.13 4.80 4.30 86.38 0.37 5.17 16 12 C 0.19 6.63 0.52 4.68 0.00 6.64 16 13 N -0.73 -32.65 4.50 -298.51 -1.34 -34.00 16 14 C -0.20 -11.20 9.07 84.03 0.76 -10.44 16 15 H 0.06 3.53 7.35 -2.91 -0.02 3.51 16 16 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 17 N -0.99 -64.50 13.97 21.65 0.30 -64.20 16 18 Si 0.94 46.93 27.79 68.60 1.91 48.83 16 19 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 20 H -0.30 -15.45 7.11 99.48 0.71 -14.75 16 21 H -0.25 -10.89 6.45 99.48 0.64 -10.25 16 22 C -0.13 -4.29 5.89 31.89 0.19 -4.11 16 23 C -0.11 -3.19 6.79 31.67 0.22 -2.98 16 24 C -0.11 -2.73 6.80 31.32 0.21 -2.52 16 25 C -0.12 -3.38 5.70 31.32 0.18 -3.20 16 26 N -0.23 -8.25 12.04 -49.99 -0.60 -8.85 16 27 N -0.09 -2.62 12.91 37.02 0.48 -2.14 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.90 8.06 -2.39 -0.02 0.88 16 34 H 0.08 0.49 7.44 -2.39 -0.02 0.47 16 35 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 37 H 0.23 4.00 7.63 -2.91 -0.02 3.97 16 38 H 0.41 15.63 7.75 -92.71 -0.72 14.91 16 39 H 0.08 2.69 8.08 -2.39 -0.02 2.67 16 40 H 0.03 1.54 7.52 -2.39 -0.02 1.52 16 41 H 0.37 15.96 5.32 -92.71 -0.49 15.47 16 42 H 0.25 15.96 8.31 -92.70 -0.77 15.19 16 43 H 0.04 1.77 7.17 -2.39 -0.02 1.76 16 44 H 0.08 2.32 8.06 -2.39 -0.02 2.31 16 45 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.09 2.10 7.80 -2.39 -0.02 2.08 16 50 H 0.06 1.79 7.75 -2.38 -0.02 1.77 16 Total: -1.00 -78.53 401.45 2.89 -75.63 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: -0.33 Total: 38.00 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 6.05 Total: 7.63 kcal Atomic # 7 Polarization: -141.81 SS G_CDS: -4.66 Total: -146.48 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.07 Total: -23.62 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.91 Total: 48.83 kcal Total: -78.53 2.89 -75.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568237073.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.600 kcal (2) G-P(sol) polarization free energy of solvation -78.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds