Wall clock time and date at job start Tue Mar 31 2020 18:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47044 * 2 1 4 4 N 1.46499 * 109.46939 * 179.97438 * 3 2 1 5 5 C 1.34817 * 126.59610 * 125.24547 * 4 3 2 6 6 C 1.36592 * 106.84139 * 180.13032 * 5 4 3 7 7 C 1.47524 * 125.76904 * 179.89821 * 6 5 4 8 8 O 1.21601 * 120.00268 * 353.26508 * 7 6 5 9 9 N 1.34781 * 120.00144 * 173.26489 * 7 6 5 10 10 C 1.46925 * 120.62699 * 4.65179 * 9 7 6 11 11 C 1.53186 * 108.77401 * 233.62871 * 10 9 7 12 12 C 1.53045 * 109.31296 * 305.36587 * 11 10 9 13 13 C 1.53040 * 109.53785 * 61.36603 * 12 11 10 14 14 C 1.46925 * 120.63187 * 184.66772 * 9 7 6 15 15 H 1.08992 * 109.58902 * 246.30157 * 14 9 7 16 16 C 1.52999 * 109.58457 * 6.58799 * 14 9 7 17 17 C 1.53003 * 109.46899 * 178.32677 * 16 14 9 18 18 N 1.46497 * 109.47259 * 174.91668 * 17 16 14 19 19 C 1.36934 * 120.00167 * 180.27794 * 18 17 16 20 20 H 1.08002 * 120.00171 * 359.72460 * 19 18 17 21 21 C 1.38810 * 120.00211 * 179.72156 * 19 18 17 22 22 N 1.31622 * 119.99980 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00173 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46815 * 60.00096 * 23 21 19 25 25 H 1.48500 * 109.47158 * 180.02562 * 23 21 19 26 26 H 1.48489 * 109.47204 * 300.00223 * 23 21 19 27 27 N 1.34395 * 108.46122 * 359.63388 * 6 5 4 28 28 N 1.28764 * 109.51850 * 0.22814 * 27 6 5 29 29 H 1.09002 * 109.47462 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47322 * 300.00089 * 1 2 3 31 31 H 1.09005 * 109.47335 * 59.99911 * 1 2 3 32 32 H 1.09002 * 109.46971 * 240.00196 * 2 1 3 33 33 H 1.09005 * 109.47335 * 120.00089 * 2 1 3 34 34 H 1.09002 * 109.47077 * 60.00261 * 3 2 1 35 35 H 1.08996 * 109.47389 * 299.99692 * 3 2 1 36 36 H 1.07998 * 126.57596 * 359.97438 * 5 4 3 37 37 H 1.09002 * 109.58903 * 353.41748 * 10 9 7 38 38 H 1.09002 * 109.58868 * 113.83989 * 10 9 7 39 39 H 1.08996 * 109.50173 * 65.31539 * 11 10 9 40 40 H 1.09007 * 109.49887 * 185.38199 * 11 10 9 41 41 H 1.09003 * 109.45844 * 181.38848 * 12 11 10 42 42 H 1.09005 * 109.45899 * 301.34480 * 12 11 10 43 43 H 1.08997 * 109.49652 * 178.68415 * 13 12 11 44 44 H 1.08998 * 109.50086 * 58.58796 * 13 12 11 45 45 H 1.09000 * 109.47359 * 58.33355 * 16 14 9 46 46 H 1.08996 * 109.47399 * 298.32483 * 16 14 9 47 47 H 1.09004 * 109.47185 * 54.91527 * 17 16 14 48 48 H 1.09000 * 109.47066 * 294.91793 * 17 16 14 49 49 H 0.96996 * 120.00038 * 359.97438 * 18 17 16 50 50 H 0.96998 * 120.00033 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5049 1.4424 0.0006 5 6 4.3090 2.0669 -0.8831 6 6 5.5944 1.7981 -0.5072 7 6 6.8108 2.2772 -1.1906 8 8 6.7202 2.8722 -2.2473 9 7 8.0226 2.0556 -0.6439 10 6 8.1566 1.2513 0.5784 11 6 8.9381 2.0607 1.6180 12 6 10.2697 2.5106 1.0125 13 6 10.0041 3.4081 -0.1983 14 6 9.2347 2.6139 -1.2585 15 1 9.8591 1.8043 -1.6362 16 6 8.8446 3.5413 -2.4112 17 6 10.1065 4.1536 -3.0225 18 7 9.7439 4.9451 -4.2007 19 6 10.7162 5.5872 -4.9200 20 1 11.7500 5.5138 -4.6162 21 6 10.3732 6.3323 -6.0398 22 7 9.1134 6.4213 -6.4105 23 14 11.6996 7.2088 -7.0207 24 1 12.6730 6.2131 -7.5367 25 1 11.0775 7.9302 -8.1600 26 1 12.4024 8.1803 -6.1448 27 7 5.5636 1.0281 0.5939 28 7 4.3404 0.7973 0.9234 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9967 2.6630 -1.7278 37 1 7.1673 1.0128 0.9692 38 1 8.6942 0.3303 0.3527 39 1 8.3571 2.9355 1.9098 40 1 9.1273 1.4408 2.4944 41 1 10.8385 3.0658 1.7584 42 1 10.8397 1.6361 0.6984 43 1 10.9526 3.7471 -0.6148 44 1 9.4131 4.2703 0.1105 45 1 8.2003 4.3363 -2.0358 46 1 8.3122 2.9710 -3.1723 47 1 10.7911 3.3577 -3.3160 48 1 10.5909 4.7968 -2.2878 49 1 8.8155 5.0107 -4.4739 50 1 8.8738 6.9417 -7.1932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568397017.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:47 Heat of formation + Delta-G solvation = 88.512729 kcal Electronic energy + Delta-G solvation = -29310.442530 eV Core-core repulsion = 25375.952842 eV Total energy + Delta-G solvation = -3934.489688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.50115 -40.17350 -37.26795 -36.47625 -35.06776 -33.34240 -32.70349 -32.59699 -30.97069 -30.37970 -27.71355 -27.56651 -25.29011 -23.98567 -23.45797 -23.27568 -22.00610 -21.89737 -20.74319 -20.46810 -19.34613 -17.60920 -16.92957 -16.54347 -16.26851 -16.06014 -15.56162 -15.22159 -14.86986 -14.56775 -14.35801 -14.28311 -14.02501 -13.86571 -13.45271 -13.32370 -13.10231 -12.99262 -12.89102 -12.64603 -12.53442 -12.39477 -12.22243 -11.96138 -11.65513 -11.42316 -11.19518 -11.10986 -10.80966 -10.80548 -10.74380 -10.63823 -10.37560 -10.30547 -9.99361 -9.89917 -9.54343 -9.44477 -8.84508 -8.69768 -8.37256 -6.74210 -5.61534 -2.89093 0.91651 1.56175 1.71492 3.00806 3.33146 3.52586 3.55902 3.57689 3.84427 3.98350 4.16433 4.39941 4.52407 4.64944 4.70203 4.75940 4.77647 4.86681 4.93869 4.97615 5.03281 5.11857 5.17930 5.25050 5.39636 5.42002 5.46057 5.54802 5.60741 5.64753 5.69880 5.80510 5.94503 5.97971 6.05604 6.08380 6.16979 6.20274 6.35351 6.36200 6.49577 6.51125 6.66153 6.83699 7.15935 7.27570 7.52166 7.74052 7.81870 8.32369 8.57919 9.68144 10.31001 10.66003 11.61525 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012473 B = 0.002595 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.261543 B =10789.377991 C =12849.454413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.120 3.880 4 N -0.358 5.358 5 C 0.094 3.906 6 C -0.092 4.092 7 C 0.595 3.405 8 O -0.515 6.515 9 N -0.592 5.592 10 C 0.067 3.933 11 C -0.130 4.130 12 C -0.122 4.122 13 C -0.132 4.132 14 C 0.152 3.848 15 H 0.073 0.927 16 C -0.117 4.117 17 C 0.148 3.852 18 N -0.731 5.731 19 C -0.235 4.235 20 H 0.068 0.932 21 C -0.018 4.018 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.287 1.287 27 N -0.209 5.209 28 N -0.069 5.069 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.207 0.793 37 H 0.142 0.858 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.093 0.907 47 H 0.013 0.987 48 H 0.015 0.985 49 H 0.385 0.615 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.675 -14.679 19.716 29.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C -0.001 4.001 4 N -0.144 5.144 5 C -0.063 4.063 6 C -0.231 4.231 7 C 0.381 3.619 8 O -0.390 6.390 9 N -0.324 5.324 10 C -0.056 4.056 11 C -0.169 4.169 12 C -0.159 4.159 13 C -0.170 4.170 14 C 0.049 3.951 15 H 0.091 0.909 16 C -0.155 4.155 17 C 0.020 3.980 18 N -0.375 5.375 19 C -0.366 4.366 20 H 0.086 0.914 21 C -0.214 4.214 22 N -0.583 5.583 23 Si 0.738 3.262 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.214 1.214 27 N -0.081 5.081 28 N -0.049 5.049 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.223 0.777 37 H 0.158 0.842 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.111 0.889 47 H 0.031 0.969 48 H 0.033 0.967 49 H 0.219 0.781 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.585 -15.167 20.335 29.773 hybrid contribution 0.362 1.157 -1.432 1.876 sum -15.223 -14.010 18.903 28.024 Atomic orbital electron populations 1.21707 0.93803 1.02900 1.02416 1.21831 0.97009 0.94528 1.04236 1.22190 0.72459 1.00137 1.05311 1.50505 1.08783 1.34972 1.20140 1.23451 0.90032 0.96867 0.95916 1.21724 0.95008 1.07704 0.98693 1.16930 0.81494 0.79435 0.84090 1.90973 1.85567 1.41433 1.20994 1.47931 1.05691 1.51574 1.27206 1.22824 1.05750 0.92854 0.84190 1.21870 0.96642 1.00380 0.97988 1.21569 0.96980 0.99731 0.97644 1.22046 1.01193 0.98408 0.95331 1.21353 0.84480 0.95959 0.93259 0.90932 1.22256 0.97854 0.98666 0.96697 1.20800 0.94337 0.93271 0.89601 1.42351 1.07711 1.58267 1.29156 1.19213 0.89277 1.22665 1.05452 0.91377 1.24743 0.96162 1.01435 0.99019 1.69674 1.15255 1.45623 1.27740 0.86273 0.80878 0.79458 0.79629 1.21377 1.21773 1.21399 1.74058 1.11884 1.11486 1.10705 1.81940 0.93731 1.17141 1.12048 0.91623 0.92084 0.92123 0.90952 0.90065 0.88309 0.87514 0.77671 0.84157 0.91993 0.91907 0.91134 0.91975 0.91918 0.89991 0.91505 0.91438 0.88874 0.96950 0.96679 0.78105 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.42 9.91 37.16 0.37 -0.05 16 2 C -0.14 -0.60 6.14 -26.74 -0.16 -0.76 16 3 C 0.12 0.53 6.54 -4.05 -0.03 0.50 16 4 N -0.36 -3.06 3.69 -61.07 -0.23 -3.29 16 5 C 0.09 0.93 11.28 -16.84 -0.19 0.74 16 6 C -0.09 -1.18 6.77 -83.55 -0.57 -1.75 16 7 C 0.60 9.21 7.54 -12.47 -0.09 9.12 16 8 O -0.51 -9.54 12.40 5.28 0.07 -9.48 16 9 N -0.59 -8.47 2.97 -166.44 -0.49 -8.96 16 10 C 0.07 0.79 6.32 -3.71 -0.02 0.76 16 11 C -0.13 -1.36 6.08 -26.61 -0.16 -1.52 16 12 C -0.12 -1.31 5.88 -26.69 -0.16 -1.47 16 13 C -0.13 -1.78 4.82 -26.61 -0.13 -1.90 16 14 C 0.15 2.33 3.03 -67.60 -0.20 2.13 16 15 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 16 C -0.12 -2.26 3.28 -26.73 -0.09 -2.35 16 17 C 0.15 3.29 5.73 -4.04 -0.02 3.27 16 18 N -0.73 -20.33 5.60 -59.91 -0.34 -20.67 16 19 C -0.23 -7.01 9.99 -15.06 -0.15 -7.16 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.02 -0.55 5.50 -17.43 -0.10 -0.64 16 22 N -0.93 -29.82 13.06 55.49 0.72 -29.09 16 23 Si 0.91 23.40 29.55 -169.99 -5.02 18.37 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 N -0.21 -2.58 8.64 32.84 0.28 -2.29 16 28 N -0.07 -0.77 13.65 60.35 0.82 0.05 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.11 0.24 8.08 -51.93 -0.42 -0.18 16 36 H 0.21 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.14 1.67 3.60 -131.02 -0.47 1.20 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.13 6.87 -51.93 -0.36 0.77 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.07 1.41 7.22 -51.93 -0.38 1.03 16 46 H 0.09 2.01 6.25 -51.93 -0.32 1.68 16 47 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.02 0.33 6.84 -51.93 -0.36 -0.02 16 49 H 0.39 11.41 7.67 -40.82 -0.31 11.10 16 50 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 394.41 15.07 5.94 5.94 Total: -1.00 -35.93 394.41 -8.45 -44.37 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -8.50 Total: 6.12 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -1.70 Total: -1.09 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: 0.78 Total: -64.25 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.07 Total: -9.48 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.02 Total: 18.37 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.93 -8.45 -44.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568397017.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.887 kcal (2) G-P(sol) polarization free energy of solvation -35.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds