Wall clock time and date at job start Tue Mar 31 2020 18:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47044 * 2 1 4 4 N 1.46499 * 109.46939 * 179.97438 * 3 2 1 5 5 C 1.34817 * 126.59610 * 125.24547 * 4 3 2 6 6 C 1.36592 * 106.84139 * 180.13032 * 5 4 3 7 7 C 1.47524 * 125.76904 * 179.89821 * 6 5 4 8 8 O 1.21601 * 120.00268 * 353.26508 * 7 6 5 9 9 N 1.34781 * 120.00144 * 173.26489 * 7 6 5 10 10 C 1.46925 * 120.62699 * 4.65179 * 9 7 6 11 11 C 1.53186 * 108.77401 * 233.62871 * 10 9 7 12 12 C 1.53045 * 109.31296 * 305.36587 * 11 10 9 13 13 C 1.53040 * 109.53785 * 61.36603 * 12 11 10 14 14 C 1.46925 * 120.63187 * 184.66772 * 9 7 6 15 15 H 1.08992 * 109.58902 * 246.30157 * 14 9 7 16 16 C 1.52999 * 109.58457 * 6.58799 * 14 9 7 17 17 C 1.53003 * 109.46899 * 178.32677 * 16 14 9 18 18 N 1.46497 * 109.47259 * 174.91668 * 17 16 14 19 19 C 1.36934 * 120.00167 * 180.27794 * 18 17 16 20 20 H 1.08002 * 120.00171 * 359.72460 * 19 18 17 21 21 C 1.38810 * 120.00211 * 179.72156 * 19 18 17 22 22 N 1.31622 * 119.99980 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00173 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46815 * 60.00096 * 23 21 19 25 25 H 1.48500 * 109.47158 * 180.02562 * 23 21 19 26 26 H 1.48489 * 109.47204 * 300.00223 * 23 21 19 27 27 N 1.34395 * 108.46122 * 359.63388 * 6 5 4 28 28 N 1.28764 * 109.51850 * 0.22814 * 27 6 5 29 29 H 1.09002 * 109.47462 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47322 * 300.00089 * 1 2 3 31 31 H 1.09005 * 109.47335 * 59.99911 * 1 2 3 32 32 H 1.09002 * 109.46971 * 240.00196 * 2 1 3 33 33 H 1.09005 * 109.47335 * 120.00089 * 2 1 3 34 34 H 1.09002 * 109.47077 * 60.00261 * 3 2 1 35 35 H 1.08996 * 109.47389 * 299.99692 * 3 2 1 36 36 H 1.07998 * 126.57596 * 359.97438 * 5 4 3 37 37 H 1.09002 * 109.58903 * 353.41748 * 10 9 7 38 38 H 1.09002 * 109.58868 * 113.83989 * 10 9 7 39 39 H 1.08996 * 109.50173 * 65.31539 * 11 10 9 40 40 H 1.09007 * 109.49887 * 185.38199 * 11 10 9 41 41 H 1.09003 * 109.45844 * 181.38848 * 12 11 10 42 42 H 1.09005 * 109.45899 * 301.34480 * 12 11 10 43 43 H 1.08997 * 109.49652 * 178.68415 * 13 12 11 44 44 H 1.08998 * 109.50086 * 58.58796 * 13 12 11 45 45 H 1.09000 * 109.47359 * 58.33355 * 16 14 9 46 46 H 1.08996 * 109.47399 * 298.32483 * 16 14 9 47 47 H 1.09004 * 109.47185 * 54.91527 * 17 16 14 48 48 H 1.09000 * 109.47066 * 294.91793 * 17 16 14 49 49 H 0.96996 * 120.00038 * 359.97438 * 18 17 16 50 50 H 0.96998 * 120.00033 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5049 1.4424 0.0006 5 6 4.3090 2.0669 -0.8831 6 6 5.5944 1.7981 -0.5072 7 6 6.8108 2.2772 -1.1906 8 8 6.7202 2.8722 -2.2473 9 7 8.0226 2.0556 -0.6439 10 6 8.1566 1.2513 0.5784 11 6 8.9381 2.0607 1.6180 12 6 10.2697 2.5106 1.0125 13 6 10.0041 3.4081 -0.1983 14 6 9.2347 2.6139 -1.2585 15 1 9.8591 1.8043 -1.6362 16 6 8.8446 3.5413 -2.4112 17 6 10.1065 4.1536 -3.0225 18 7 9.7439 4.9451 -4.2007 19 6 10.7162 5.5872 -4.9200 20 1 11.7500 5.5138 -4.6162 21 6 10.3732 6.3323 -6.0398 22 7 9.1134 6.4213 -6.4105 23 14 11.6996 7.2088 -7.0207 24 1 12.6730 6.2131 -7.5367 25 1 11.0775 7.9302 -8.1600 26 1 12.4024 8.1803 -6.1448 27 7 5.5636 1.0281 0.5939 28 7 4.3404 0.7973 0.9234 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9967 2.6630 -1.7278 37 1 7.1673 1.0128 0.9692 38 1 8.6942 0.3303 0.3527 39 1 8.3571 2.9355 1.9098 40 1 9.1273 1.4408 2.4944 41 1 10.8385 3.0658 1.7584 42 1 10.8397 1.6361 0.6984 43 1 10.9526 3.7471 -0.6148 44 1 9.4131 4.2703 0.1105 45 1 8.2003 4.3363 -2.0358 46 1 8.3122 2.9710 -3.1723 47 1 10.7911 3.3577 -3.3160 48 1 10.5909 4.7968 -2.2878 49 1 8.8155 5.0107 -4.4739 50 1 8.8738 6.9417 -7.1932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568397017.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:46 Heat of formation + Delta-G solvation = 64.739586 kcal Electronic energy + Delta-G solvation = -29311.473411 eV Core-core repulsion = 25375.952842 eV Total energy + Delta-G solvation = -3935.520569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.34987 -41.33685 -38.43098 -37.13462 -36.80086 -34.62635 -33.95443 -33.45761 -32.50407 -31.61182 -29.26001 -28.08672 -26.67367 -25.43554 -24.70248 -24.02174 -23.37968 -22.51742 -22.00244 -21.63440 -20.33830 -19.18037 -18.38968 -17.36608 -17.28831 -17.13065 -16.60350 -16.34344 -15.96159 -15.84416 -15.55287 -15.40301 -15.34161 -15.01110 -14.72683 -14.50606 -14.34034 -14.22440 -13.96123 -13.62175 -13.43000 -13.21554 -12.98087 -12.89414 -12.83751 -12.68693 -12.62667 -12.34337 -12.22109 -12.11857 -11.89052 -11.79320 -11.76033 -11.73631 -11.42228 -11.29997 -10.93320 -10.89610 -10.35597 -10.17981 -9.52808 -8.98503 -7.92584 -5.22858 0.12020 0.57338 1.05974 1.46199 1.51414 1.57384 1.91938 2.22565 2.57372 3.07645 3.28961 3.39319 3.59471 3.81896 3.82448 3.88779 3.94199 4.01160 4.12883 4.14547 4.16668 4.20628 4.30928 4.36382 4.47947 4.50987 4.53313 4.60012 4.67516 4.74963 4.79166 4.83738 4.93188 5.01114 5.07942 5.11417 5.14262 5.17412 5.19259 5.30493 5.35596 5.41349 5.44964 5.48438 5.51480 5.55663 5.80117 6.28648 6.39017 6.84063 7.16868 7.33398 8.10880 8.35328 9.31438 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012473 B = 0.002595 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.261543 B =10789.377991 C =12849.454413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.109 3.891 4 N -0.344 5.344 5 C 0.105 3.895 6 C -0.118 4.118 7 C 0.589 3.411 8 O -0.558 6.558 9 N -0.592 5.592 10 C 0.064 3.936 11 C -0.125 4.125 12 C -0.115 4.115 13 C -0.128 4.128 14 C 0.156 3.844 15 H 0.081 0.919 16 C -0.094 4.094 17 C 0.149 3.851 18 N -0.748 5.748 19 C -0.248 4.248 20 H 0.078 0.922 21 C -0.082 4.082 22 N -0.973 5.973 23 Si 0.981 3.019 24 H -0.276 1.276 25 H -0.294 1.294 26 H -0.275 1.275 27 N -0.217 5.217 28 N -0.081 5.081 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.135 0.865 36 H 0.227 0.773 37 H 0.143 0.857 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.052 0.948 45 H 0.046 0.954 46 H 0.067 0.933 47 H 0.019 0.981 48 H 0.025 0.975 49 H 0.371 0.629 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.498 -15.219 21.156 30.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C -0.009 4.009 4 N -0.129 5.129 5 C -0.053 4.053 6 C -0.257 4.257 7 C 0.376 3.624 8 O -0.436 6.436 9 N -0.323 5.323 10 C -0.058 4.058 11 C -0.164 4.164 12 C -0.153 4.153 13 C -0.166 4.166 14 C 0.053 3.947 15 H 0.099 0.901 16 C -0.132 4.132 17 C 0.022 3.978 18 N -0.390 5.390 19 C -0.380 4.380 20 H 0.096 0.904 21 C -0.274 4.274 22 N -0.624 5.624 23 Si 0.809 3.191 24 H -0.202 1.202 25 H -0.220 1.220 26 H -0.201 1.201 27 N -0.089 5.089 28 N -0.060 5.060 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.134 0.866 35 H 0.153 0.847 36 H 0.244 0.756 37 H 0.159 0.841 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.115 0.885 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.037 0.963 48 H 0.043 0.957 49 H 0.202 0.798 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.396 -15.756 21.854 31.030 hybrid contribution 0.189 1.260 -1.818 2.220 sum -15.206 -14.496 20.035 29.031 Atomic orbital electron populations 1.21682 0.92347 1.03116 1.03255 1.21776 0.98130 0.94158 1.03077 1.22672 0.69927 1.00730 1.07600 1.50775 1.09998 1.33379 1.18758 1.23756 0.89334 0.96144 0.96068 1.21470 0.94916 1.09543 0.99754 1.17305 0.82513 0.78849 0.83736 1.90948 1.86280 1.43551 1.22841 1.48038 1.05032 1.51431 1.27827 1.23020 1.06410 0.93074 0.83316 1.21855 0.95947 1.00209 0.98340 1.21547 0.97506 0.99682 0.96551 1.21996 1.00301 0.98293 0.96015 1.21226 0.85286 0.95588 0.92637 0.90137 1.21939 0.95622 0.98247 0.97401 1.20961 0.95781 0.92950 0.88119 1.42616 1.06764 1.58989 1.30617 1.19673 0.90056 1.22491 1.05739 0.90404 1.25707 0.98616 1.02687 1.00394 1.69863 1.17538 1.46695 1.28254 0.85104 0.77967 0.78280 0.77752 1.20168 1.21991 1.20145 1.74006 1.12621 1.11646 1.10621 1.81859 0.93704 1.17645 1.12821 0.91771 0.91266 0.91245 0.91994 0.91383 0.86555 0.84732 0.75622 0.84082 0.90861 0.92903 0.88482 0.90360 0.90736 0.90225 0.92869 0.93573 0.91407 0.96306 0.95723 0.79805 0.93991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.91 71.98 0.71 0.16 16 2 C -0.13 -0.97 6.14 30.59 0.19 -0.79 16 3 C 0.11 0.74 6.54 86.38 0.56 1.30 16 4 N -0.34 -5.43 3.69 -347.12 -1.28 -6.71 16 5 C 0.10 2.01 11.28 83.85 0.95 2.96 16 6 C -0.12 -3.03 6.77 40.82 0.28 -2.75 16 7 C 0.59 18.84 7.54 86.69 0.65 19.49 16 8 O -0.56 -21.88 12.40 -4.04 -0.05 -21.93 16 9 N -0.59 -17.04 2.97 -798.76 -2.37 -19.41 16 10 C 0.06 1.42 6.32 86.36 0.55 1.97 16 11 C -0.13 -2.35 6.08 30.67 0.19 -2.16 16 12 C -0.12 -2.22 5.88 30.62 0.18 -2.04 16 13 C -0.13 -3.36 4.82 30.67 0.15 -3.21 16 14 C 0.16 4.79 3.03 44.98 0.14 4.93 16 15 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 16 C -0.09 -3.79 3.28 30.60 0.10 -3.69 16 17 C 0.15 6.73 5.73 86.38 0.50 7.23 16 18 N -0.75 -42.77 5.60 -343.45 -1.92 -44.69 16 19 C -0.25 -14.94 9.99 84.03 0.84 -14.10 16 20 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 21 C -0.08 -5.03 5.50 84.86 0.47 -4.57 16 22 N -0.97 -63.49 13.06 21.65 0.28 -63.21 16 23 Si 0.98 48.33 29.55 68.60 2.03 50.35 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 25 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 26 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 27 N -0.22 -5.26 8.64 -50.00 -0.43 -5.69 16 28 N -0.08 -1.73 13.65 37.02 0.51 -1.23 16 29 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.07 0.16 8.14 -2.38 -0.02 0.14 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.13 0.22 8.08 -2.39 -0.02 0.20 16 36 H 0.23 3.24 8.06 -2.91 -0.02 3.22 16 37 H 0.14 3.25 3.60 -104.73 -0.38 2.87 16 38 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.08 2.11 6.87 -2.39 -0.02 2.10 16 44 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.05 2.03 7.22 -2.39 -0.02 2.01 16 46 H 0.07 3.10 6.25 -2.39 -0.01 3.08 16 47 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 48 H 0.02 1.08 6.84 -2.39 -0.02 1.07 16 49 H 0.37 22.96 7.67 -92.71 -0.71 22.25 16 50 H 0.25 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -79.57 394.41 3.05 -76.51 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: -0.14 Total: 31.27 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 6.44 Total: 4.73 kcal Atomic # 7 Polarization: -135.72 SS G_CDS: -5.22 Total: -140.94 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.05 Total: -21.93 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.35 kcal Total: -79.57 3.05 -76.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568397017.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.254 kcal (2) G-P(sol) polarization free energy of solvation -79.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds