Wall clock time and date at job start Tue Mar 31 2020 18:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36931 * 119.99871 * 2 1 4 4 H 1.08006 * 119.99610 * 146.12089 * 3 2 1 5 5 C 1.38809 * 120.00365 * 326.39492 * 3 2 1 6 6 N 1.31622 * 119.99923 * 4.06086 * 5 3 2 7 7 Si 1.86804 * 120.00134 * 184.06818 * 5 3 2 8 8 H 1.48497 * 109.47093 * 359.97438 * 7 5 3 9 9 H 1.48493 * 109.47385 * 119.99887 * 7 5 3 10 10 H 1.48500 * 109.46978 * 239.99989 * 7 5 3 11 11 C 1.46507 * 119.99823 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.46948 * 264.50628 * 11 2 1 13 13 H 1.09004 * 109.87621 * 304.78003 * 12 11 2 14 14 C 1.54330 * 109.88023 * 65.79155 * 12 11 2 15 15 C 1.55159 * 102.94280 * 141.60918 * 14 12 11 16 16 C 1.54910 * 101.58047 * 324.49949 * 15 14 12 17 17 N 1.47020 * 109.88262 * 183.59968 * 12 11 2 18 18 C 1.34775 * 125.64964 * 61.62017 * 17 12 11 19 19 O 1.21559 * 119.99704 * 4.97622 * 18 17 12 20 20 C 1.47871 * 119.99856 * 184.97494 * 18 17 12 21 21 N 1.34545 * 126.04913 * 0.02841 * 20 18 17 22 22 C 1.30876 * 107.26495 * 180.02562 * 21 20 18 23 23 N 1.34580 * 107.62862 * 359.97438 * 22 21 20 24 24 C 1.46498 * 125.74757 * 180.02562 * 23 22 21 25 25 C 1.52994 * 109.47352 * 75.00122 * 24 23 22 26 26 C 1.53003 * 109.47122 * 195.00039 * 24 23 22 27 27 C 1.52997 * 109.47240 * 314.99725 * 24 23 22 28 28 N 1.28855 * 108.50267 * 359.73450 * 23 22 21 29 29 H 1.09005 * 109.47510 * 94.67636 * 1 2 3 30 30 H 1.08999 * 109.47382 * 214.67326 * 1 2 3 31 31 H 1.08995 * 109.47081 * 334.67790 * 1 2 3 32 32 H 0.96999 * 120.00227 * 179.97438 * 6 5 3 33 33 H 1.08996 * 109.47015 * 24.51024 * 11 2 1 34 34 H 1.08998 * 109.46872 * 144.50732 * 11 2 1 35 35 H 1.09000 * 110.72150 * 259.97091 * 14 12 11 36 36 H 1.08996 * 110.71743 * 23.06834 * 14 12 11 37 37 H 1.08997 * 111.00118 * 82.57070 * 15 14 12 38 38 H 1.08995 * 111.00561 * 206.42311 * 15 14 12 39 39 H 1.09000 * 110.36591 * 155.84460 * 16 15 14 40 40 H 1.09006 * 110.36822 * 278.17005 * 16 15 14 41 41 H 1.08001 * 126.18271 * 179.97438 * 22 21 20 42 42 H 1.09004 * 109.47184 * 59.99537 * 25 24 23 43 43 H 1.08993 * 109.47604 * 179.97438 * 25 24 23 44 44 H 1.08999 * 109.47013 * 300.00017 * 25 24 23 45 45 H 1.08999 * 109.47434 * 59.99567 * 26 24 23 46 46 H 1.08993 * 109.47581 * 180.02562 * 26 24 23 47 47 H 1.09007 * 109.47241 * 300.00285 * 26 24 23 48 48 H 1.08999 * 109.46779 * 60.00195 * 27 24 23 49 49 H 1.08996 * 109.47529 * 179.97438 * 27 24 23 50 50 H 1.08999 * 109.47506 * 300.00402 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.0921 1.2652 0.5214 5 6 1.6296 2.2876 -0.6653 6 7 0.4419 2.2162 -1.2282 7 14 2.6154 3.8714 -0.7620 8 1 3.9086 3.6935 -0.0540 9 1 2.8720 4.2087 -2.1851 10 1 1.8490 4.9712 -0.1230 11 6 2.1975 -1.2688 -0.0006 12 6 2.5720 -1.6420 1.4351 13 1 3.1291 -0.8267 1.8967 14 6 1.2953 -1.9336 2.2517 15 6 1.7190 -3.1303 3.1438 16 6 2.6594 -3.9104 2.1915 17 7 3.3816 -2.8693 1.4377 18 6 4.5844 -3.0181 0.8483 19 8 5.1285 -2.0637 0.3280 20 6 5.2422 -4.3424 0.8344 21 7 4.7524 -5.4753 1.3700 22 6 5.6300 -6.4207 1.1485 23 7 6.6592 -5.8722 0.4769 24 6 7.8611 -6.5786 0.0267 25 6 7.5201 -7.4410 -1.1902 26 6 8.9379 -5.5609 -0.3551 27 6 8.3806 -7.4715 1.1552 28 7 6.4066 -4.6223 0.2911 29 1 -0.3634 -0.0838 -1.0243 30 1 -0.3634 -0.8451 0.5846 31 1 -0.3633 0.9289 0.4395 32 1 0.0784 2.9862 -1.6928 33 1 1.5693 -2.0507 -0.4272 34 1 3.1037 -1.1648 -0.5972 35 1 1.0242 -1.0733 2.8638 36 1 0.4720 -2.2119 1.5939 37 1 2.2557 -2.7873 4.0283 38 1 0.8559 -3.7348 3.4223 39 1 3.3596 -4.5186 2.7641 40 1 2.0788 -4.5358 1.5133 41 1 5.5438 -7.4541 1.4501 42 1 7.1499 -6.8048 -1.9942 43 1 8.4143 -7.9662 -1.5254 44 1 6.7530 -8.1660 -0.9182 45 1 9.1808 -4.9464 0.5117 46 1 9.8319 -6.0864 -0.6905 47 1 8.5677 -4.9246 -1.1591 48 1 7.6135 -8.1965 1.4272 49 1 9.2745 -7.9975 0.8202 50 1 8.6235 -6.8571 2.0221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570539534.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:36 Heat of formation + Delta-G solvation = 90.728345 kcal Electronic energy + Delta-G solvation = -29996.621904 eV Core-core repulsion = 26062.228292 eV Total energy + Delta-G solvation = -3934.393612 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.58430 -39.65694 -37.71880 -37.03035 -35.11346 -32.86548 -31.63654 -31.20042 -30.78363 -28.88058 -28.09206 -27.93734 -25.93360 -25.15803 -24.73658 -23.19081 -22.19886 -20.95968 -20.55516 -20.21806 -18.88974 -17.37806 -16.74260 -16.64258 -16.32127 -16.07108 -15.34400 -14.78189 -14.63005 -14.60111 -14.33588 -13.83530 -13.54471 -13.36125 -13.20864 -12.98307 -12.96015 -12.83863 -12.79390 -12.48668 -12.35810 -12.21576 -11.85564 -11.82591 -11.67104 -11.48914 -11.07305 -10.90490 -10.75833 -10.71571 -10.53614 -10.47351 -10.27382 -10.23134 -9.96416 -9.85333 -9.73323 -9.59499 -9.51061 -8.40489 -8.18975 -6.42855 -5.64683 -3.15741 1.44476 1.95335 2.11189 3.14534 3.47259 3.54608 3.59483 3.62293 3.85038 4.04015 4.10943 4.21560 4.49702 4.62183 4.68000 4.83962 4.94989 4.97946 5.03378 5.07713 5.17981 5.25404 5.27300 5.30511 5.37364 5.54490 5.56877 5.72027 5.73457 5.80679 5.90523 5.93810 6.05046 6.08182 6.24165 6.27508 6.38577 6.41291 6.44377 6.63419 6.73687 6.88516 7.00241 7.19016 7.51611 7.81830 7.85342 7.98151 8.00700 8.50875 8.62912 9.40723 9.98768 10.53282 11.42177 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015899 B = 0.002875 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.672098 B = 9736.953083 C =10909.457966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.596 5.596 3 C -0.252 4.252 4 H 0.066 0.934 5 C 0.010 3.990 6 N -0.907 5.907 7 Si 0.900 3.100 8 H -0.276 1.276 9 H -0.289 1.289 10 H -0.291 1.291 11 C 0.146 3.854 12 C 0.118 3.882 13 H 0.077 0.923 14 C -0.114 4.114 15 C -0.138 4.138 16 C 0.109 3.891 17 N -0.594 5.594 18 C 0.620 3.380 19 O -0.510 6.510 20 C 0.151 3.849 21 N -0.481 5.481 22 C 0.182 3.818 23 N -0.295 5.295 24 C 0.167 3.833 25 C -0.160 4.160 26 C -0.150 4.150 27 C -0.159 4.159 28 N -0.249 5.249 29 H 0.014 0.986 30 H -0.006 1.006 31 H 0.057 0.943 32 H 0.251 0.749 33 H 0.036 0.964 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.219 0.781 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.069 0.931 49 H 0.087 0.913 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.327 -26.001 7.068 29.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.319 5.319 3 C -0.382 4.382 4 H 0.083 0.917 5 C -0.189 4.189 6 N -0.552 5.552 7 Si 0.730 3.270 8 H -0.201 1.201 9 H -0.216 1.216 10 H -0.218 1.218 11 C 0.017 3.983 12 C 0.014 3.986 13 H 0.095 0.905 14 C -0.152 4.152 15 C -0.177 4.177 16 C -0.014 4.014 17 N -0.328 5.328 18 C 0.403 3.597 19 O -0.382 6.382 20 C -0.128 4.128 21 N -0.206 5.206 22 C -0.113 4.113 23 N -0.092 5.092 24 C 0.085 3.915 25 C -0.218 4.218 26 C -0.207 4.207 27 C -0.217 4.217 28 N -0.087 5.087 29 H 0.032 0.968 30 H 0.012 0.988 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.235 0.765 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.088 0.912 49 H 0.106 0.894 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.664 -24.858 6.473 28.639 hybrid contribution 0.508 0.410 -0.098 0.660 sum 13.172 -24.448 6.375 28.493 Atomic orbital electron populations 1.20878 0.82894 0.97170 0.97320 1.43721 1.01541 1.00341 1.86277 1.19194 1.04488 0.88054 1.26435 0.91653 1.25306 0.96993 0.99194 0.97373 1.70039 1.16233 1.29748 1.39150 0.86243 0.80005 0.83310 0.77472 1.20102 1.21572 1.21811 1.21012 0.96555 0.88668 0.92032 1.22645 0.90256 0.84819 1.00911 0.90485 1.22640 0.97009 0.97822 0.97722 1.22856 0.99135 0.97699 0.97964 1.22389 0.94903 0.90283 0.93820 1.48274 1.17279 1.14976 1.52297 1.15857 0.80161 0.84044 0.79613 1.90882 1.63362 1.38768 1.45154 1.23856 0.91801 0.95387 1.01804 1.71405 1.28094 0.98615 1.22495 1.26335 0.85504 1.01356 0.98142 1.47774 1.17041 1.05758 1.38579 1.21134 0.81987 0.92559 0.95815 1.22265 1.03333 0.99691 0.96523 1.22001 0.96600 0.98327 1.03781 1.22249 1.02573 0.99362 0.97532 1.74333 1.17280 0.96841 1.20220 0.96798 0.98814 0.92433 0.93847 0.94596 0.92613 0.90214 0.90487 0.91198 0.90348 0.89474 0.91620 0.76495 0.91139 0.89652 0.91379 0.91243 0.90390 0.90386 0.91175 0.89386 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.11 8.70 59.85 0.52 4.63 16 2 N -0.60 -15.90 2.77 -181.12 -0.50 -16.40 16 3 C -0.25 -7.39 9.55 -15.06 -0.14 -7.54 16 4 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 5 C 0.01 0.29 5.33 -17.43 -0.09 0.19 16 6 N -0.91 -27.50 10.66 55.49 0.59 -26.91 16 7 Si 0.90 23.13 29.56 -169.99 -5.02 18.11 16 8 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 9 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 10 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 11 C 0.15 3.42 5.12 -4.04 -0.02 3.40 16 12 C 0.12 2.36 3.07 -66.95 -0.21 2.15 16 13 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 14 C -0.11 -1.87 5.62 -24.89 -0.14 -2.01 16 15 C -0.14 -1.77 7.09 -24.58 -0.17 -1.94 16 16 C 0.11 1.53 5.97 -2.53 -0.02 1.52 16 17 N -0.59 -10.73 3.06 -164.10 -0.50 -11.23 16 18 C 0.62 12.31 7.59 -12.32 -0.09 12.22 16 19 O -0.51 -12.14 16.26 5.31 0.09 -12.06 16 20 C 0.15 2.53 7.78 -156.35 -1.22 1.31 16 21 N -0.48 -6.42 8.61 -12.36 -0.11 -6.53 16 22 C 0.18 1.73 11.71 -90.48 -1.06 0.67 16 23 N -0.29 -3.09 3.16 -49.84 -0.16 -3.25 16 24 C 0.17 1.08 1.22 -131.82 -0.16 0.92 16 25 C -0.16 -0.78 8.72 37.15 0.32 -0.46 16 26 C -0.15 -1.08 8.05 37.16 0.30 -0.78 16 27 C -0.16 -0.57 8.28 37.16 0.31 -0.26 16 28 N -0.25 -3.82 11.09 32.07 0.36 -3.47 16 29 H 0.01 0.38 7.79 -51.93 -0.40 -0.03 16 30 H -0.01 -0.14 5.98 -51.93 -0.31 -0.45 16 31 H 0.06 1.57 6.95 -51.93 -0.36 1.21 16 32 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.04 0.80 7.95 -51.93 -0.41 0.39 16 34 H 0.06 1.47 6.86 -51.93 -0.36 1.11 16 35 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.08 1.28 6.19 -51.93 -0.32 0.96 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 1.16 6.48 -51.93 -0.34 0.82 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.22 0.96 7.53 -52.49 -0.39 0.56 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.08 0.73 8.02 -51.92 -0.42 0.32 16 48 H 0.07 0.15 7.34 -51.93 -0.38 -0.23 16 49 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 50 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 395.22 15.07 5.96 5.96 Total: -1.00 -36.75 395.22 -9.49 -46.24 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -8.31 Total: -4.49 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: -1.87 Total: 14.02 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: -0.32 Total: -67.79 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.75 -9.49 -46.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570539534.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.972 kcal (2) G-P(sol) polarization free energy of solvation -36.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds