Wall clock time and date at job start Tue Mar 31 2020 18:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36931 * 119.99871 * 2 1 4 4 H 1.08006 * 119.99610 * 146.12089 * 3 2 1 5 5 C 1.38809 * 120.00365 * 326.39492 * 3 2 1 6 6 N 1.31622 * 119.99923 * 4.06086 * 5 3 2 7 7 Si 1.86804 * 120.00134 * 184.06818 * 5 3 2 8 8 H 1.48497 * 109.47093 * 359.97438 * 7 5 3 9 9 H 1.48493 * 109.47385 * 119.99887 * 7 5 3 10 10 H 1.48500 * 109.46978 * 239.99989 * 7 5 3 11 11 C 1.46507 * 119.99823 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.46948 * 264.50628 * 11 2 1 13 13 H 1.09004 * 109.87621 * 304.78003 * 12 11 2 14 14 C 1.54330 * 109.88023 * 65.79155 * 12 11 2 15 15 C 1.55159 * 102.94280 * 141.60918 * 14 12 11 16 16 C 1.54910 * 101.58047 * 324.49949 * 15 14 12 17 17 N 1.47020 * 109.88262 * 183.59968 * 12 11 2 18 18 C 1.34775 * 125.64964 * 61.62017 * 17 12 11 19 19 O 1.21559 * 119.99704 * 4.97622 * 18 17 12 20 20 C 1.47871 * 119.99856 * 184.97494 * 18 17 12 21 21 N 1.34545 * 126.04913 * 0.02841 * 20 18 17 22 22 C 1.30876 * 107.26495 * 180.02562 * 21 20 18 23 23 N 1.34580 * 107.62862 * 359.97438 * 22 21 20 24 24 C 1.46498 * 125.74757 * 180.02562 * 23 22 21 25 25 C 1.52994 * 109.47352 * 75.00122 * 24 23 22 26 26 C 1.53003 * 109.47122 * 195.00039 * 24 23 22 27 27 C 1.52997 * 109.47240 * 314.99725 * 24 23 22 28 28 N 1.28855 * 108.50267 * 359.73450 * 23 22 21 29 29 H 1.09005 * 109.47510 * 94.67636 * 1 2 3 30 30 H 1.08999 * 109.47382 * 214.67326 * 1 2 3 31 31 H 1.08995 * 109.47081 * 334.67790 * 1 2 3 32 32 H 0.96999 * 120.00227 * 179.97438 * 6 5 3 33 33 H 1.08996 * 109.47015 * 24.51024 * 11 2 1 34 34 H 1.08998 * 109.46872 * 144.50732 * 11 2 1 35 35 H 1.09000 * 110.72150 * 259.97091 * 14 12 11 36 36 H 1.08996 * 110.71743 * 23.06834 * 14 12 11 37 37 H 1.08997 * 111.00118 * 82.57070 * 15 14 12 38 38 H 1.08995 * 111.00561 * 206.42311 * 15 14 12 39 39 H 1.09000 * 110.36591 * 155.84460 * 16 15 14 40 40 H 1.09006 * 110.36822 * 278.17005 * 16 15 14 41 41 H 1.08001 * 126.18271 * 179.97438 * 22 21 20 42 42 H 1.09004 * 109.47184 * 59.99537 * 25 24 23 43 43 H 1.08993 * 109.47604 * 179.97438 * 25 24 23 44 44 H 1.08999 * 109.47013 * 300.00017 * 25 24 23 45 45 H 1.08999 * 109.47434 * 59.99567 * 26 24 23 46 46 H 1.08993 * 109.47581 * 180.02562 * 26 24 23 47 47 H 1.09007 * 109.47241 * 300.00285 * 26 24 23 48 48 H 1.08999 * 109.46779 * 60.00195 * 27 24 23 49 49 H 1.08996 * 109.47529 * 179.97438 * 27 24 23 50 50 H 1.08999 * 109.47506 * 300.00402 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.0921 1.2652 0.5214 5 6 1.6296 2.2876 -0.6653 6 7 0.4419 2.2162 -1.2282 7 14 2.6154 3.8714 -0.7620 8 1 3.9086 3.6935 -0.0540 9 1 2.8720 4.2087 -2.1851 10 1 1.8490 4.9712 -0.1230 11 6 2.1975 -1.2688 -0.0006 12 6 2.5720 -1.6420 1.4351 13 1 3.1291 -0.8267 1.8967 14 6 1.2953 -1.9336 2.2517 15 6 1.7190 -3.1303 3.1438 16 6 2.6594 -3.9104 2.1915 17 7 3.3816 -2.8693 1.4377 18 6 4.5844 -3.0181 0.8483 19 8 5.1285 -2.0637 0.3280 20 6 5.2422 -4.3424 0.8344 21 7 4.7524 -5.4753 1.3700 22 6 5.6300 -6.4207 1.1485 23 7 6.6592 -5.8722 0.4769 24 6 7.8611 -6.5786 0.0267 25 6 7.5201 -7.4410 -1.1902 26 6 8.9379 -5.5609 -0.3551 27 6 8.3806 -7.4715 1.1552 28 7 6.4066 -4.6223 0.2911 29 1 -0.3634 -0.0838 -1.0243 30 1 -0.3634 -0.8451 0.5846 31 1 -0.3633 0.9289 0.4395 32 1 0.0784 2.9862 -1.6928 33 1 1.5693 -2.0507 -0.4272 34 1 3.1037 -1.1648 -0.5972 35 1 1.0242 -1.0733 2.8638 36 1 0.4720 -2.2119 1.5939 37 1 2.2557 -2.7873 4.0283 38 1 0.8559 -3.7348 3.4223 39 1 3.3596 -4.5186 2.7641 40 1 2.0788 -4.5358 1.5133 41 1 5.5438 -7.4541 1.4501 42 1 7.1499 -6.8048 -1.9942 43 1 8.4143 -7.9662 -1.5254 44 1 6.7530 -8.1660 -0.9182 45 1 9.1808 -4.9464 0.5117 46 1 9.8319 -6.0864 -0.6905 47 1 8.5677 -4.9246 -1.1591 48 1 7.6135 -8.1965 1.4272 49 1 9.2745 -7.9975 0.8202 50 1 8.6235 -6.8571 2.0221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570539534.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:35 Heat of formation + Delta-G solvation = 67.656011 kcal Electronic energy + Delta-G solvation = -29997.622396 eV Core-core repulsion = 26062.228292 eV Total energy + Delta-G solvation = -3935.394104 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.53061 -41.13472 -38.77796 -38.17207 -37.10033 -33.93194 -33.46355 -32.64066 -31.83648 -30.57807 -28.48404 -28.39500 -28.00583 -26.82663 -26.14173 -24.08317 -23.53823 -22.74379 -21.86727 -21.07174 -20.28653 -18.73312 -18.29948 -17.86960 -17.56141 -17.29200 -16.83428 -16.45754 -15.75303 -15.60074 -15.33760 -15.12943 -15.06014 -14.86928 -14.72502 -14.34913 -13.97380 -13.72218 -13.69936 -13.31281 -13.24940 -13.17599 -13.11771 -13.01877 -12.79966 -12.77123 -12.59872 -12.39089 -12.37011 -12.24106 -12.05520 -11.97532 -11.94533 -11.59606 -11.50289 -11.40565 -11.29963 -11.20434 -10.63202 -10.57085 -9.76155 -8.60347 -7.91440 -5.45770 0.32876 1.12671 1.16797 1.39295 1.41919 1.53461 1.88118 2.25197 2.46416 3.01351 3.24394 3.25188 3.65536 3.66924 3.68278 3.77748 3.81588 3.86256 3.95816 4.07434 4.37288 4.41481 4.51332 4.54007 4.57674 4.60779 4.68655 4.78092 4.79806 4.81692 4.86520 4.91182 4.97083 5.02656 5.07645 5.10725 5.14413 5.17064 5.20034 5.22686 5.33204 5.38951 5.44274 5.49284 5.61289 5.70913 5.74808 6.35335 6.43775 6.87365 7.13643 7.16289 7.81503 8.29524 9.13004 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015899 B = 0.002875 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.672098 B = 9736.953083 C =10909.457966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.610 5.610 3 C -0.267 4.267 4 H 0.049 0.951 5 C -0.038 4.038 6 N -0.930 5.930 7 Si 0.964 3.036 8 H -0.277 1.277 9 H -0.288 1.288 10 H -0.279 1.279 11 C 0.154 3.846 12 C 0.126 3.874 13 H 0.041 0.959 14 C -0.108 4.108 15 C -0.120 4.120 16 C 0.109 3.891 17 N -0.592 5.592 18 C 0.611 3.389 19 O -0.570 6.570 20 C 0.123 3.877 21 N -0.492 5.492 22 C 0.201 3.799 23 N -0.287 5.287 24 C 0.157 3.843 25 C -0.156 4.156 26 C -0.150 4.150 27 C -0.153 4.153 28 N -0.279 5.279 29 H -0.011 1.011 30 H 0.036 0.964 31 H 0.034 0.966 32 H 0.252 0.748 33 H 0.048 0.952 34 H 0.014 0.986 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.276 0.724 42 H 0.041 0.959 43 H 0.114 0.886 44 H 0.085 0.915 45 H 0.049 0.951 46 H 0.111 0.889 47 H 0.045 0.955 48 H 0.094 0.906 49 H 0.113 0.887 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.583 -30.040 8.751 33.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.334 5.334 3 C -0.397 4.397 4 H 0.067 0.933 5 C -0.234 4.234 6 N -0.576 5.576 7 Si 0.792 3.208 8 H -0.202 1.202 9 H -0.214 1.214 10 H -0.205 1.205 11 C 0.026 3.974 12 C 0.021 3.979 13 H 0.059 0.941 14 C -0.146 4.146 15 C -0.158 4.158 16 C -0.012 4.012 17 N -0.325 5.325 18 C 0.396 3.604 19 O -0.447 6.447 20 C -0.155 4.155 21 N -0.218 5.218 22 C -0.093 4.093 23 N -0.084 5.084 24 C 0.076 3.924 25 C -0.214 4.214 26 C -0.208 4.208 27 C -0.211 4.211 28 N -0.119 5.119 29 H 0.008 0.992 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.032 0.968 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.135 0.865 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.291 0.709 42 H 0.060 0.940 43 H 0.132 0.868 44 H 0.104 0.896 45 H 0.069 0.931 46 H 0.129 0.871 47 H 0.064 0.936 48 H 0.113 0.887 49 H 0.132 0.868 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.911 -28.962 8.189 32.750 hybrid contribution 0.554 1.512 -0.669 1.743 sum 13.465 -27.450 7.521 31.486 Atomic orbital electron populations 1.20664 0.82019 0.97682 0.96305 1.43870 1.02198 1.00616 1.86686 1.19283 1.04257 0.89533 1.26649 0.93281 1.25990 0.97955 1.02264 0.97226 1.70176 1.17131 1.30606 1.39650 0.85263 0.78567 0.79729 0.77283 1.20150 1.21435 1.20508 1.20951 0.94571 0.87802 0.94033 1.22250 0.92010 0.85158 0.98481 0.94113 1.22555 0.94684 0.99514 0.97823 1.22865 1.00089 0.95937 0.96925 1.22643 0.95105 0.89522 0.93932 1.48355 1.16843 1.15278 1.52066 1.16421 0.80364 0.84934 0.78640 1.90828 1.65032 1.41142 1.47704 1.23175 0.92802 0.94985 1.04571 1.71300 1.29384 0.98046 1.23048 1.27351 0.83700 1.02583 0.95655 1.48201 1.18244 1.04340 1.37626 1.21663 0.80290 0.92427 0.97970 1.22288 1.05185 0.99212 0.94683 1.22022 0.98371 0.98494 1.01897 1.22291 1.04326 0.98900 0.95594 1.74253 1.17240 0.99713 1.20729 0.99240 0.94575 0.94727 0.93864 0.93373 0.96770 0.90602 0.90170 0.90470 0.86454 0.88151 0.90525 0.70872 0.93993 0.86792 0.89587 0.93143 0.87092 0.93556 0.88711 0.86798 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.18 8.70 127.77 1.11 10.29 16 2 N -0.61 -33.89 2.77 -726.94 -2.01 -35.90 16 3 C -0.27 -16.40 9.55 84.03 0.80 -15.59 16 4 H 0.05 3.12 7.83 -2.91 -0.02 3.10 16 5 C -0.04 -2.33 5.33 84.86 0.45 -1.88 16 6 N -0.93 -57.80 10.66 21.65 0.23 -57.57 16 7 Si 0.96 49.02 29.56 68.60 2.03 51.05 16 8 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 9 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 10 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 11 C 0.15 7.61 5.12 86.38 0.44 8.05 16 12 C 0.13 5.24 3.07 45.34 0.14 5.38 16 13 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 14 C -0.11 -3.41 5.62 31.79 0.18 -3.23 16 15 C -0.12 -2.71 7.09 31.99 0.23 -2.49 16 16 C 0.11 2.86 5.97 86.85 0.52 3.37 16 17 N -0.59 -22.00 3.06 -791.36 -2.43 -24.42 16 18 C 0.61 25.79 7.59 86.79 0.66 26.45 16 19 O -0.57 -29.78 16.26 -3.90 -0.06 -29.85 16 20 C 0.12 4.21 7.78 137.13 1.07 5.28 16 21 N -0.49 -12.29 8.61 -193.03 -1.66 -13.95 16 22 C 0.20 3.18 11.71 180.30 2.11 5.29 16 23 N -0.29 -5.62 3.16 -311.60 -0.99 -6.60 16 24 C 0.16 1.67 1.22 3.60 0.00 1.67 16 25 C -0.16 -1.07 8.72 71.98 0.63 -0.45 16 26 C -0.15 -2.12 8.05 71.98 0.58 -1.54 16 27 C -0.15 -0.45 8.28 71.98 0.60 0.14 16 28 N -0.28 -8.86 11.09 -52.44 -0.58 -9.44 16 29 H -0.01 -0.60 7.79 -2.38 -0.02 -0.62 16 30 H 0.04 1.54 5.98 -2.39 -0.01 1.52 16 31 H 0.03 1.92 6.95 -2.39 -0.02 1.90 16 32 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 33 H 0.05 2.21 7.95 -2.39 -0.02 2.19 16 34 H 0.01 0.80 6.86 -2.39 -0.02 0.78 16 35 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.08 2.49 6.19 -2.39 -0.01 2.48 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.10 2.42 6.48 -2.39 -0.02 2.41 16 40 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.28 0.73 7.53 -2.91 -0.02 0.71 16 42 H 0.04 0.55 8.14 -2.38 -0.02 0.53 16 43 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.05 0.94 8.02 -2.38 -0.02 0.92 16 48 H 0.09 -0.15 7.34 -2.39 -0.02 -0.17 16 49 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 50 H 0.06 0.36 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -88.90 395.22 4.96 -83.94 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: 0.92 Total: 1.99 kcal Atomic # 6 Polarization: 31.24 SS G_CDS: 9.52 Total: 40.75 kcal Atomic # 7 Polarization: -140.45 SS G_CDS: -7.44 Total: -147.89 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.06 Total: -29.85 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 2.03 Total: 51.05 kcal Total: -88.90 4.96 -83.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570539534.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.594 kcal (2) G-P(sol) polarization free energy of solvation -88.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds