Wall clock time and date at job start Tue Mar 31 2020 18:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 120.00021 * 2 1 4 4 H 1.08000 * 119.99799 * 174.02016 * 3 2 1 5 5 C 1.38817 * 119.99665 * 354.01639 * 3 2 1 6 6 N 1.31617 * 119.99838 * 5.17908 * 5 3 2 7 7 Si 1.86801 * 119.99711 * 185.17218 * 5 3 2 8 8 H 1.48499 * 109.47169 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.46526 * 120.00116 * 7 5 3 10 10 H 1.48494 * 109.47310 * 239.99989 * 7 5 3 11 11 C 1.46504 * 120.00079 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47241 * 275.26433 * 11 2 1 13 13 H 1.09008 * 109.99851 * 53.42779 * 12 11 2 14 14 C 1.54318 * 109.88383 * 292.33466 * 12 11 2 15 15 C 1.55152 * 102.94357 * 218.38856 * 14 12 11 16 16 C 1.54905 * 101.58144 * 35.49812 * 15 14 12 17 17 N 1.47014 * 109.88455 * 174.52117 * 12 11 2 18 18 C 1.34776 * 125.65099 * 298.32870 * 17 12 11 19 19 O 1.21549 * 120.00201 * 4.92875 * 18 17 12 20 20 C 1.47872 * 119.99971 * 184.92544 * 18 17 12 21 21 N 1.34551 * 126.04732 * 359.69405 * 20 18 17 22 22 C 1.30879 * 107.26571 * 179.86803 * 21 20 18 23 23 N 1.34577 * 107.62389 * 0.38524 * 22 21 20 24 24 C 1.46500 * 125.74664 * 179.73334 * 23 22 21 25 25 C 1.52998 * 109.47309 * 74.99961 * 24 23 22 26 26 C 1.53007 * 109.47439 * 195.00295 * 24 23 22 27 27 C 1.53006 * 109.47169 * 315.00033 * 24 23 22 28 28 N 1.28848 * 108.50947 * 359.75269 * 23 22 21 29 29 H 1.08999 * 109.46760 * 184.54282 * 1 2 3 30 30 H 1.09001 * 109.47454 * 304.54253 * 1 2 3 31 31 H 1.08999 * 109.47187 * 64.54912 * 1 2 3 32 32 H 0.96999 * 119.99608 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.46841 * 155.26922 * 11 2 1 34 34 H 1.08999 * 109.47063 * 35.26534 * 11 2 1 35 35 H 1.08998 * 110.72160 * 336.75300 * 14 12 11 36 36 H 1.09004 * 110.71926 * 100.02733 * 14 12 11 37 37 H 1.09000 * 111.00352 * 277.42646 * 15 14 12 38 38 H 1.09000 * 111.00664 * 153.57609 * 15 14 12 39 39 H 1.09003 * 110.37265 * 204.14616 * 16 15 14 40 40 H 1.09010 * 110.36783 * 81.83157 * 16 15 14 41 41 H 1.08000 * 126.18593 * 180.15871 * 22 21 20 42 42 H 1.08998 * 109.47081 * 60.00487 * 25 24 23 43 43 H 1.09000 * 109.47014 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.47287 * 299.99902 * 25 24 23 45 45 H 1.08997 * 109.47183 * 59.99642 * 26 24 23 46 46 H 1.08996 * 109.47237 * 179.97438 * 26 24 23 47 47 H 1.08999 * 109.46576 * 300.00155 * 26 24 23 48 48 H 1.09000 * 109.46833 * 59.99825 * 27 24 23 49 49 H 1.09000 * 109.47201 * 180.02562 * 27 24 23 50 50 H 1.08997 * 109.46990 * 300.00074 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2253 1.1884 0.0974 5 6 1.4612 2.3848 -0.1253 6 7 0.1452 2.3893 -0.1416 7 14 2.4027 3.9916 -0.2707 8 1 3.8613 3.7165 -0.2268 9 1 2.0621 4.6501 -1.5575 10 1 2.0330 4.8856 0.8558 11 6 2.1975 -1.2688 0.0006 12 6 2.3380 -1.7760 1.4372 13 1 1.3588 -1.8201 1.9143 14 6 3.2691 -0.8397 2.2358 15 6 4.0760 -1.8251 3.1219 16 6 4.2309 -3.0403 2.1739 17 7 2.9552 -3.1103 1.4383 18 6 2.4399 -4.2147 0.8628 19 8 1.4212 -4.1378 0.2042 20 6 3.1138 -5.5199 1.0326 21 7 4.2444 -5.7428 1.7272 22 6 4.5094 -7.0213 1.6380 23 7 3.5488 -7.5849 0.8826 24 6 3.4631 -9.0029 0.5246 25 6 2.9889 -9.8071 1.7367 26 6 2.4693 -9.1796 -0.6253 27 6 4.8418 -9.5030 0.0885 28 7 2.7172 -6.6672 0.5268 29 1 -0.3633 -1.0244 0.0814 30 1 -0.3634 0.5827 0.8465 31 1 -0.3633 0.4416 -0.9279 32 1 -0.3359 3.2271 -0.2288 33 1 3.1876 -1.1168 -0.4294 34 1 1.6526 -2.0032 -0.5924 35 1 3.9320 -0.2920 1.5659 36 1 2.6890 -0.1530 2.8524 37 1 3.5144 -2.0961 4.0159 38 1 5.0482 -1.4080 3.3846 39 1 4.3878 -3.9528 2.7492 40 1 5.0588 -2.8795 1.4831 41 1 5.3494 -7.5312 2.0862 42 1 2.0067 -9.4510 2.0473 43 1 2.9247 -10.8621 1.4701 44 1 3.6969 -9.6814 2.5558 45 1 2.8072 -8.6066 -1.4888 46 1 2.4060 -10.2345 -0.8919 47 1 1.4872 -8.8233 -0.3146 48 1 5.5498 -9.3771 0.9076 49 1 4.7780 -10.5579 -0.1783 50 1 5.1797 -8.9300 -0.7750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570539535.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:40 Heat of formation + Delta-G solvation = 99.423851 kcal Electronic energy + Delta-G solvation = -29974.413896 eV Core-core repulsion = 26040.397349 eV Total energy + Delta-G solvation = -3934.016547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.61737 -39.67237 -37.73480 -37.03249 -35.19475 -32.89801 -31.62696 -31.21477 -30.76666 -28.79754 -28.11489 -27.96540 -25.82008 -25.24851 -24.69462 -23.21881 -22.18390 -21.10309 -20.45228 -20.12876 -18.85725 -17.35527 -16.87092 -16.67982 -16.49390 -16.01976 -15.34902 -14.73592 -14.65246 -14.58955 -14.41197 -13.86631 -13.53758 -13.44106 -13.14385 -13.03598 -12.88044 -12.83108 -12.62641 -12.42280 -12.36958 -12.20221 -11.93707 -11.85209 -11.68504 -11.51418 -11.01961 -10.88149 -10.82768 -10.68277 -10.52954 -10.32557 -10.24610 -10.07916 -10.00314 -9.87069 -9.63721 -9.61513 -9.47563 -8.49356 -8.20325 -6.73923 -5.50942 -2.93487 1.41121 1.92475 2.07444 3.12441 3.45383 3.51259 3.53534 3.58211 3.82522 4.02037 4.08500 4.19029 4.47911 4.59805 4.65627 4.81997 4.95732 5.00596 5.01635 5.05919 5.15768 5.25058 5.31438 5.35154 5.38306 5.53715 5.57247 5.72669 5.78623 5.80589 5.88012 5.95844 6.10411 6.13129 6.25859 6.26553 6.40015 6.47923 6.55333 6.69912 6.77972 6.93348 7.04276 7.13451 7.79049 7.82674 7.85929 7.97579 8.09468 8.46639 8.52594 9.40336 10.03993 10.48942 11.48184 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024377 B = 0.002553 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.350653 B =10963.187704 C =11563.148057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.170 3.830 2 N -0.606 5.606 3 C -0.237 4.237 4 H 0.074 0.926 5 C -0.009 4.009 6 N -0.918 5.918 7 Si 0.905 3.095 8 H -0.281 1.281 9 H -0.292 1.292 10 H -0.292 1.292 11 C 0.147 3.853 12 C 0.117 3.883 13 H 0.070 0.930 14 C -0.108 4.108 15 C -0.139 4.139 16 C 0.099 3.901 17 N -0.592 5.592 18 C 0.621 3.379 19 O -0.516 6.516 20 C 0.152 3.848 21 N -0.481 5.481 22 C 0.183 3.817 23 N -0.295 5.295 24 C 0.167 3.833 25 C -0.159 4.159 26 C -0.149 4.149 27 C -0.160 4.160 28 N -0.249 5.249 29 H -0.006 1.006 30 H 0.046 0.954 31 H 0.036 0.964 32 H 0.247 0.753 33 H 0.046 0.954 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.219 0.781 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.069 0.931 49 H 0.087 0.913 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.969 -27.311 6.200 30.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.329 5.329 3 C -0.366 4.366 4 H 0.092 0.908 5 C -0.204 4.204 6 N -0.566 5.566 7 Si 0.736 3.264 8 H -0.206 1.206 9 H -0.219 1.219 10 H -0.219 1.219 11 C 0.018 3.982 12 C 0.012 3.988 13 H 0.088 0.912 14 C -0.146 4.146 15 C -0.177 4.177 16 C -0.024 4.024 17 N -0.326 5.326 18 C 0.404 3.596 19 O -0.388 6.388 20 C -0.128 4.128 21 N -0.206 5.206 22 C -0.112 4.112 23 N -0.091 5.091 24 C 0.085 3.915 25 C -0.218 4.218 26 C -0.207 4.207 27 C -0.218 4.218 28 N -0.087 5.087 29 H 0.012 0.988 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.082 0.918 41 H 0.235 0.765 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.088 0.912 49 H 0.106 0.894 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.847 -26.967 5.531 29.589 hybrid contribution 0.798 0.645 0.138 1.035 sum 11.645 -26.322 5.669 29.336 Atomic orbital electron populations 1.21024 0.81526 0.93256 1.01631 1.44018 1.02481 1.00285 1.86166 1.19365 0.91071 0.83753 1.42438 0.90807 1.24873 0.95668 0.97768 1.02120 1.70259 1.04927 1.24413 1.57031 0.86146 0.78813 0.84150 0.77267 1.20587 1.21874 1.21948 1.21062 0.96423 0.88496 0.92216 1.22781 0.96117 0.78707 1.01179 0.91160 1.22547 0.97810 0.96428 0.97786 1.22863 1.00898 0.95998 0.97980 1.22563 0.85446 0.99943 0.94422 1.48346 1.22683 1.08467 1.53104 1.15861 0.83344 0.80155 0.80258 1.90842 1.24032 1.84661 1.39312 1.23858 0.94057 0.94469 1.00424 1.71379 1.14394 1.13325 1.21530 1.26362 0.97079 0.90061 0.97745 1.47770 1.17369 1.08997 1.34986 1.21145 0.98752 0.74140 0.97472 1.22261 1.02765 1.00479 0.96250 1.22000 0.99347 1.02768 0.96572 1.22258 0.93808 1.02941 1.02765 1.74324 1.16636 0.97359 1.20404 0.98790 0.93541 0.94543 0.94170 0.93590 0.92975 0.90239 0.90050 0.91328 0.90398 0.88371 0.91843 0.76470 0.91206 0.89637 0.91383 0.91194 0.90379 0.90443 0.91162 0.89373 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.63 8.99 59.85 0.54 5.17 16 2 N -0.61 -16.16 2.83 -181.11 -0.51 -16.67 16 3 C -0.24 -6.59 9.01 -15.06 -0.14 -6.73 16 4 H 0.07 1.97 7.16 -52.49 -0.38 1.60 16 5 C -0.01 -0.25 5.46 -17.43 -0.10 -0.34 16 6 N -0.92 -27.56 9.44 55.49 0.52 -27.03 16 7 Si 0.91 22.42 29.56 -169.99 -5.02 17.39 16 8 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 9 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 10 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 11 C 0.15 3.40 5.06 -4.04 -0.02 3.38 16 12 C 0.12 2.34 3.14 -66.96 -0.21 2.13 16 13 H 0.07 1.54 8.14 -51.92 -0.42 1.12 16 14 C -0.11 -1.90 5.76 -24.90 -0.14 -2.04 16 15 C -0.14 -1.90 7.08 -24.59 -0.17 -2.07 16 16 C 0.10 1.43 6.30 -2.53 -0.02 1.41 16 17 N -0.59 -10.62 3.06 -164.11 -0.50 -11.13 16 18 C 0.62 11.98 7.68 -12.32 -0.09 11.89 16 19 O -0.52 -11.75 15.88 5.32 0.08 -11.66 16 20 C 0.15 2.47 7.80 -156.35 -1.22 1.25 16 21 N -0.48 -6.30 8.39 -12.36 -0.10 -6.40 16 22 C 0.18 1.68 11.71 -90.48 -1.06 0.62 16 23 N -0.29 -2.97 3.17 -49.83 -0.16 -3.13 16 24 C 0.17 1.02 1.23 -131.81 -0.16 0.85 16 25 C -0.16 -0.69 8.72 37.16 0.32 -0.37 16 26 C -0.15 -1.02 8.04 37.16 0.30 -0.72 16 27 C -0.16 -0.54 8.28 37.16 0.31 -0.23 16 28 N -0.25 -3.70 11.09 32.08 0.36 -3.35 16 29 H -0.01 -0.17 7.90 -51.93 -0.41 -0.58 16 30 H 0.05 1.34 6.96 -51.93 -0.36 0.98 16 31 H 0.04 1.07 7.12 -51.93 -0.37 0.70 16 32 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 33 H 0.05 1.05 7.86 -51.93 -0.41 0.64 16 34 H 0.05 1.29 6.47 -51.93 -0.34 0.95 16 35 H 0.08 1.48 6.90 -51.93 -0.36 1.12 16 36 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.10 1.33 5.87 -51.93 -0.30 1.02 16 40 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 41 H 0.22 0.91 7.53 -52.49 -0.40 0.51 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 44 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.08 0.68 8.02 -51.93 -0.42 0.27 16 48 H 0.07 0.14 7.34 -51.93 -0.38 -0.24 16 49 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 50 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 394.17 15.07 5.94 5.94 Total: -1.00 -35.64 394.17 -9.59 -45.22 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -8.33 Total: -3.38 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: -1.86 Total: 14.19 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: -0.40 Total: -67.71 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.08 Total: -11.66 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.64 -9.59 -45.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570539535.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.647 kcal (2) G-P(sol) polarization free energy of solvation -35.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds