Wall clock time and date at job start Tue Mar 31 2020 18:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 120.00021 * 2 1 4 4 H 1.08000 * 119.99799 * 174.02016 * 3 2 1 5 5 C 1.38817 * 119.99665 * 354.01639 * 3 2 1 6 6 N 1.31617 * 119.99838 * 5.17908 * 5 3 2 7 7 Si 1.86801 * 119.99711 * 185.17218 * 5 3 2 8 8 H 1.48499 * 109.47169 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.46526 * 120.00116 * 7 5 3 10 10 H 1.48494 * 109.47310 * 239.99989 * 7 5 3 11 11 C 1.46504 * 120.00079 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47241 * 275.26433 * 11 2 1 13 13 H 1.09008 * 109.99851 * 53.42779 * 12 11 2 14 14 C 1.54318 * 109.88383 * 292.33466 * 12 11 2 15 15 C 1.55152 * 102.94357 * 218.38856 * 14 12 11 16 16 C 1.54905 * 101.58144 * 35.49812 * 15 14 12 17 17 N 1.47014 * 109.88455 * 174.52117 * 12 11 2 18 18 C 1.34776 * 125.65099 * 298.32870 * 17 12 11 19 19 O 1.21549 * 120.00201 * 4.92875 * 18 17 12 20 20 C 1.47872 * 119.99971 * 184.92544 * 18 17 12 21 21 N 1.34551 * 126.04732 * 359.69405 * 20 18 17 22 22 C 1.30879 * 107.26571 * 179.86803 * 21 20 18 23 23 N 1.34577 * 107.62389 * 0.38524 * 22 21 20 24 24 C 1.46500 * 125.74664 * 179.73334 * 23 22 21 25 25 C 1.52998 * 109.47309 * 74.99961 * 24 23 22 26 26 C 1.53007 * 109.47439 * 195.00295 * 24 23 22 27 27 C 1.53006 * 109.47169 * 315.00033 * 24 23 22 28 28 N 1.28848 * 108.50947 * 359.75269 * 23 22 21 29 29 H 1.08999 * 109.46760 * 184.54282 * 1 2 3 30 30 H 1.09001 * 109.47454 * 304.54253 * 1 2 3 31 31 H 1.08999 * 109.47187 * 64.54912 * 1 2 3 32 32 H 0.96999 * 119.99608 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.46841 * 155.26922 * 11 2 1 34 34 H 1.08999 * 109.47063 * 35.26534 * 11 2 1 35 35 H 1.08998 * 110.72160 * 336.75300 * 14 12 11 36 36 H 1.09004 * 110.71926 * 100.02733 * 14 12 11 37 37 H 1.09000 * 111.00352 * 277.42646 * 15 14 12 38 38 H 1.09000 * 111.00664 * 153.57609 * 15 14 12 39 39 H 1.09003 * 110.37265 * 204.14616 * 16 15 14 40 40 H 1.09010 * 110.36783 * 81.83157 * 16 15 14 41 41 H 1.08000 * 126.18593 * 180.15871 * 22 21 20 42 42 H 1.08998 * 109.47081 * 60.00487 * 25 24 23 43 43 H 1.09000 * 109.47014 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.47287 * 299.99902 * 25 24 23 45 45 H 1.08997 * 109.47183 * 59.99642 * 26 24 23 46 46 H 1.08996 * 109.47237 * 179.97438 * 26 24 23 47 47 H 1.08999 * 109.46576 * 300.00155 * 26 24 23 48 48 H 1.09000 * 109.46833 * 59.99825 * 27 24 23 49 49 H 1.09000 * 109.47201 * 180.02562 * 27 24 23 50 50 H 1.08997 * 109.46990 * 300.00074 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2253 1.1884 0.0974 5 6 1.4612 2.3848 -0.1253 6 7 0.1452 2.3893 -0.1416 7 14 2.4027 3.9916 -0.2707 8 1 3.8613 3.7165 -0.2268 9 1 2.0621 4.6501 -1.5575 10 1 2.0330 4.8856 0.8558 11 6 2.1975 -1.2688 0.0006 12 6 2.3380 -1.7760 1.4372 13 1 1.3588 -1.8201 1.9143 14 6 3.2691 -0.8397 2.2358 15 6 4.0760 -1.8251 3.1219 16 6 4.2309 -3.0403 2.1739 17 7 2.9552 -3.1103 1.4383 18 6 2.4399 -4.2147 0.8628 19 8 1.4212 -4.1378 0.2042 20 6 3.1138 -5.5199 1.0326 21 7 4.2444 -5.7428 1.7272 22 6 4.5094 -7.0213 1.6380 23 7 3.5488 -7.5849 0.8826 24 6 3.4631 -9.0029 0.5246 25 6 2.9889 -9.8071 1.7367 26 6 2.4693 -9.1796 -0.6253 27 6 4.8418 -9.5030 0.0885 28 7 2.7172 -6.6672 0.5268 29 1 -0.3633 -1.0244 0.0814 30 1 -0.3634 0.5827 0.8465 31 1 -0.3633 0.4416 -0.9279 32 1 -0.3359 3.2271 -0.2288 33 1 3.1876 -1.1168 -0.4294 34 1 1.6526 -2.0032 -0.5924 35 1 3.9320 -0.2920 1.5659 36 1 2.6890 -0.1530 2.8524 37 1 3.5144 -2.0961 4.0159 38 1 5.0482 -1.4080 3.3846 39 1 4.3878 -3.9528 2.7492 40 1 5.0588 -2.8795 1.4831 41 1 5.3494 -7.5312 2.0862 42 1 2.0067 -9.4510 2.0473 43 1 2.9247 -10.8621 1.4701 44 1 3.6969 -9.6814 2.5558 45 1 2.8072 -8.6066 -1.4888 46 1 2.4060 -10.2345 -0.8919 47 1 1.4872 -8.8233 -0.3146 48 1 5.5498 -9.3771 0.9076 49 1 4.7780 -10.5579 -0.1783 50 1 5.1797 -8.9300 -0.7750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570539535.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:39 Heat of formation + Delta-G solvation = 77.952507 kcal Electronic energy + Delta-G solvation = -29975.344963 eV Core-core repulsion = 26040.397349 eV Total energy + Delta-G solvation = -3934.947614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.53055 -41.14388 -38.76049 -38.16640 -37.18349 -33.90962 -33.39856 -32.64982 -31.81382 -30.51453 -28.47628 -28.38643 -28.04528 -26.78777 -26.12197 -24.08791 -23.54091 -22.83841 -21.70521 -21.06724 -20.24654 -18.88906 -18.32449 -17.82996 -17.57173 -17.29118 -16.83116 -16.30495 -15.72729 -15.55453 -15.40719 -15.13657 -15.05310 -14.85282 -14.55732 -14.26880 -14.07402 -13.72727 -13.61046 -13.41306 -13.28998 -13.23495 -13.02347 -12.85349 -12.76958 -12.76122 -12.68416 -12.37973 -12.28384 -12.11154 -11.98125 -11.95112 -11.87365 -11.62016 -11.53878 -11.39590 -11.24258 -11.13219 -10.65331 -10.56535 -9.78167 -8.89339 -7.70952 -5.16944 0.32969 1.13398 1.15654 1.48671 1.50396 1.60547 1.87386 2.24874 2.54082 3.01309 3.25526 3.38429 3.64105 3.67081 3.68779 3.78620 3.84643 3.86812 3.95729 4.07950 4.35126 4.47628 4.51460 4.54977 4.59068 4.61493 4.69664 4.77942 4.78332 4.79786 4.81667 4.88316 4.93849 5.04711 5.09367 5.11978 5.13298 5.17602 5.22146 5.23881 5.38932 5.42214 5.45812 5.53630 5.61357 5.76285 5.79886 6.29667 6.42741 6.86121 7.13723 7.17908 7.87313 8.31564 9.28882 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024377 B = 0.002553 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.350653 B =10963.187704 C =11563.148057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.191 3.809 2 N -0.619 5.619 3 C -0.240 4.240 4 H 0.087 0.913 5 C -0.068 4.068 6 N -0.952 5.952 7 Si 0.976 3.024 8 H -0.261 1.261 9 H -0.298 1.298 10 H -0.292 1.292 11 C 0.154 3.846 12 C 0.126 3.874 13 H 0.043 0.957 14 C -0.103 4.103 15 C -0.121 4.121 16 C 0.101 3.899 17 N -0.591 5.591 18 C 0.613 3.387 19 O -0.568 6.568 20 C 0.124 3.876 21 N -0.494 5.494 22 C 0.202 3.798 23 N -0.287 5.287 24 C 0.157 3.843 25 C -0.155 4.155 26 C -0.150 4.150 27 C -0.155 4.155 28 N -0.277 5.277 29 H 0.001 0.999 30 H 0.027 0.973 31 H 0.010 0.990 32 H 0.243 0.757 33 H 0.049 0.951 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.072 0.928 41 H 0.275 0.725 42 H 0.043 0.957 43 H 0.113 0.887 44 H 0.085 0.915 45 H 0.048 0.952 46 H 0.110 0.890 47 H 0.048 0.952 48 H 0.094 0.906 49 H 0.113 0.887 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.088 -29.737 7.956 34.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.343 5.343 3 C -0.369 4.369 4 H 0.105 0.895 5 C -0.261 4.261 6 N -0.602 5.602 7 Si 0.805 3.195 8 H -0.185 1.185 9 H -0.225 1.225 10 H -0.219 1.219 11 C 0.026 3.974 12 C 0.020 3.980 13 H 0.061 0.939 14 C -0.141 4.141 15 C -0.159 4.159 16 C -0.020 4.020 17 N -0.324 5.324 18 C 0.399 3.601 19 O -0.445 6.445 20 C -0.155 4.155 21 N -0.220 5.220 22 C -0.092 4.092 23 N -0.084 5.084 24 C 0.077 3.923 25 C -0.213 4.213 26 C -0.208 4.208 27 C -0.212 4.212 28 N -0.117 5.117 29 H 0.019 0.981 30 H 0.045 0.955 31 H 0.029 0.971 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.090 0.910 41 H 0.290 0.710 42 H 0.062 0.938 43 H 0.132 0.868 44 H 0.104 0.896 45 H 0.067 0.933 46 H 0.129 0.871 47 H 0.067 0.933 48 H 0.112 0.888 49 H 0.132 0.868 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.034 -29.444 7.314 33.860 hybrid contribution -0.474 1.171 -0.454 1.342 sum 14.560 -28.273 6.860 32.534 Atomic orbital electron populations 1.20646 0.82445 0.92883 0.99356 1.44184 1.02223 1.01411 1.86519 1.19724 0.91707 0.84046 1.41451 0.89516 1.25744 0.96595 1.01288 1.02433 1.70459 1.06542 1.24870 1.58353 0.85036 0.78468 0.79502 0.76491 1.18515 1.22519 1.21918 1.21026 0.95548 0.86637 0.94149 1.22337 0.96156 0.80750 0.98751 0.93859 1.22427 0.97414 0.96406 0.97896 1.22857 1.01920 0.94014 0.97129 1.22779 0.83665 1.01094 0.94501 1.48370 1.23705 1.07260 1.53063 1.16377 0.82896 0.81560 0.79306 1.90795 1.26386 1.85759 1.41575 1.23180 0.95800 0.93418 1.03092 1.71256 1.13333 1.15635 1.21782 1.27348 0.97175 0.88910 0.95808 1.48194 1.16420 1.09683 1.34058 1.21667 1.00515 0.72200 0.97961 1.22281 1.01683 1.01511 0.95800 1.22021 0.98113 1.04346 0.96282 1.22302 0.91933 1.04005 1.03000 1.74243 1.18415 0.97975 1.21085 0.98050 0.95462 0.97147 0.94722 0.93215 0.95335 0.90945 0.91306 0.90363 0.87005 0.86795 0.90977 0.70962 0.93766 0.86839 0.89617 0.93276 0.87123 0.93319 0.88754 0.86799 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 11.05 8.99 127.77 1.15 12.20 16 2 N -0.62 -34.29 2.83 -726.92 -2.06 -36.35 16 3 C -0.24 -13.53 9.01 84.03 0.76 -12.77 16 4 H 0.09 4.58 7.16 -2.91 -0.02 4.56 16 5 C -0.07 -3.97 5.46 84.86 0.46 -3.51 16 6 N -0.95 -59.05 9.44 21.65 0.20 -58.84 16 7 Si 0.98 46.44 29.56 68.60 2.03 48.46 16 8 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 9 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 10 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 11 C 0.15 7.44 5.06 86.38 0.44 7.87 16 12 C 0.13 5.19 3.14 45.34 0.14 5.33 16 13 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 14 C -0.10 -3.58 5.76 31.78 0.18 -3.40 16 15 C -0.12 -2.98 7.08 31.98 0.23 -2.76 16 16 C 0.10 2.71 6.30 86.85 0.55 3.26 16 17 N -0.59 -21.56 3.06 -791.41 -2.43 -23.99 16 18 C 0.61 24.76 7.68 86.79 0.67 25.43 16 19 O -0.57 -27.87 15.88 -3.87 -0.06 -27.93 16 20 C 0.12 4.05 7.80 137.13 1.07 5.12 16 21 N -0.49 -11.96 8.39 -193.03 -1.62 -13.58 16 22 C 0.20 3.03 11.71 180.30 2.11 5.14 16 23 N -0.29 -5.29 3.17 -311.57 -0.99 -6.28 16 24 C 0.16 1.51 1.23 3.61 0.00 1.52 16 25 C -0.15 -0.85 8.72 71.98 0.63 -0.22 16 26 C -0.15 -1.95 8.04 71.98 0.58 -1.37 16 27 C -0.15 -0.40 8.28 71.98 0.60 0.19 16 28 N -0.28 -8.36 11.09 -52.43 -0.58 -8.94 16 29 H 0.00 0.05 7.90 -2.39 -0.02 0.03 16 30 H 0.03 1.65 6.96 -2.39 -0.02 1.63 16 31 H 0.01 0.63 7.12 -2.39 -0.02 0.61 16 32 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16 33 H 0.05 2.33 7.86 -2.39 -0.02 2.31 16 34 H 0.03 1.50 6.47 -2.39 -0.02 1.49 16 35 H 0.07 2.62 6.90 -2.39 -0.02 2.60 16 36 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.11 2.78 5.87 -2.39 -0.01 2.77 16 40 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.28 0.59 7.53 -2.91 -0.02 0.56 16 42 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 45 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.05 0.91 8.02 -2.39 -0.02 0.89 16 48 H 0.09 -0.17 7.34 -2.39 -0.02 -0.19 16 49 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 50 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -84.41 394.17 4.98 -79.43 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 0.92 Total: 5.99 kcal Atomic # 6 Polarization: 32.47 SS G_CDS: 9.56 Total: 42.03 kcal Atomic # 7 Polarization: -140.51 SS G_CDS: -7.47 Total: -147.98 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.06 Total: -27.93 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal Total: -84.41 4.98 -79.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570539535.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.379 kcal (2) G-P(sol) polarization free energy of solvation -84.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds