Wall clock time and date at job start Tue Mar 31 2020 18:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47435 * 2 1 4 4 C 1.52997 * 109.47044 * 239.99650 * 2 1 3 5 5 N 1.46499 * 109.46958 * 120.00292 * 2 1 3 6 6 C 1.34811 * 126.59702 * 74.99538 * 5 2 1 7 7 C 1.36597 * 106.84110 * 179.97438 * 6 5 2 8 8 C 1.47526 * 125.77239 * 180.02562 * 7 6 5 9 9 O 1.21588 * 119.99767 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00024 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00258 * 179.97438 * 10 8 7 12 12 H 1.08999 * 110.01885 * 325.70810 * 11 10 8 13 13 C 1.54270 * 110.03171 * 87.09470 * 11 10 8 14 14 C 1.55011 * 104.13772 * 95.68625 * 13 11 10 15 15 C 1.54890 * 102.75038 * 37.95421 * 14 13 11 16 16 H 1.09000 * 110.49151 * 80.72426 * 15 14 13 17 17 C 1.53008 * 110.48286 * 203.36487 * 15 14 13 18 18 N 1.46492 * 109.47217 * 289.77620 * 17 15 14 19 19 C 1.36937 * 119.99916 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99890 * 359.97438 * 19 18 17 21 21 C 1.38817 * 120.00155 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99806 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99969 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46858 * 90.00245 * 23 21 19 25 25 H 1.48505 * 109.47178 * 209.99851 * 23 21 19 26 26 H 1.48496 * 109.47349 * 329.99889 * 23 21 19 27 27 C 1.53873 * 110.03643 * 204.31285 * 11 10 8 28 28 N 1.34405 * 108.45964 * 0.26473 * 7 6 5 29 29 N 1.28770 * 109.51977 * 359.54942 * 28 7 6 30 30 H 1.09004 * 109.47381 * 300.00454 * 1 2 3 31 31 H 1.09007 * 109.47118 * 60.00266 * 1 2 3 32 32 H 1.08999 * 109.47312 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47209 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47171 * 300.00085 * 3 2 1 35 35 H 1.09003 * 109.46789 * 59.99774 * 3 2 1 36 36 H 1.09005 * 109.47664 * 300.00645 * 4 2 1 37 37 H 1.09007 * 109.47462 * 60.00468 * 4 2 1 38 38 H 1.09006 * 109.47252 * 180.02562 * 4 2 1 39 39 H 1.07994 * 126.58131 * 359.97438 * 6 5 2 40 40 H 0.96999 * 120.00047 * 0.02562 * 10 8 7 41 41 H 1.08994 * 110.48884 * 214.35934 * 13 11 10 42 42 H 1.09000 * 110.48376 * 336.99635 * 13 11 10 43 43 H 1.08995 * 110.76258 * 279.63431 * 14 13 11 44 44 H 1.09001 * 110.90221 * 156.33405 * 14 13 11 45 45 H 1.09005 * 109.46655 * 49.77975 * 17 15 14 46 46 H 1.09002 * 109.46994 * 169.77336 * 17 15 14 47 47 H 0.97002 * 120.00141 * 359.97438 * 18 17 15 48 48 H 0.97000 * 119.99823 * 180.02562 * 22 21 19 49 49 H 1.09001 * 110.02844 * 0.02562 * 27 11 10 50 50 H 1.09000 * 110.03411 * 121.38353 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 2.0182 -0.6907 1.1961 6 6 2.0219 -2.0216 1.4105 7 6 2.5637 -2.2216 2.6484 8 6 2.7659 -3.5295 3.3002 9 8 2.4381 -4.5510 2.7280 10 7 3.3140 -3.5921 4.5299 11 6 3.5143 -4.8908 5.1774 12 1 2.7096 -5.5727 4.9029 13 6 4.8756 -5.4848 4.7604 14 6 5.8360 -5.0704 5.9043 15 6 4.9468 -5.2102 7.1648 16 1 4.8954 -6.2518 7.4819 17 6 5.4805 -4.3302 8.2970 18 7 6.7402 -4.8872 8.7960 19 6 7.4069 -4.2650 9.8174 20 1 7.0043 -3.3634 10.2549 21 6 8.6009 -4.7924 10.2900 22 7 9.0918 -5.8910 9.7565 23 14 9.5107 -3.9432 11.6829 24 1 9.0435 -4.4871 12.9834 25 1 10.9692 -4.1840 11.5409 26 1 9.2427 -2.4835 11.6318 27 6 3.5592 -4.7166 6.7056 28 7 2.8765 -1.0250 3.1744 29 7 2.5722 -0.0945 2.3379 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6765 -1.7490 -1.2493 37 1 1.6767 -0.2075 -2.1393 38 1 3.1300 -0.7217 -1.2490 39 1 1.6651 -2.7836 0.7334 40 1 3.5752 -2.7771 4.9865 41 1 4.8124 -6.5706 4.6893 42 1 5.2037 -5.0581 3.8125 43 1 6.1664 -4.0396 5.7771 44 1 6.6908 -5.7447 5.9580 45 1 5.6524 -3.3211 7.9225 46 1 4.7515 -4.2980 9.1066 47 1 7.1017 -5.6972 8.4033 48 1 9.9259 -6.2597 10.0869 49 1 3.4315 -3.6657 6.9655 50 1 2.7762 -5.3139 7.1727 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571535948.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:43 Heat of formation + Delta-G solvation = 52.884311 kcal Electronic energy + Delta-G solvation = -28490.087203 eV Core-core repulsion = 24554.052550 eV Total energy + Delta-G solvation = -3936.034653 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.56341 -39.83715 -38.04257 -37.67922 -34.74188 -33.31019 -32.32792 -31.34720 -30.73051 -28.70431 -28.24312 -28.17067 -27.64209 -24.58281 -24.06077 -23.49950 -22.10570 -21.15131 -20.43038 -20.02241 -19.32964 -17.91620 -16.96155 -16.68613 -16.46558 -16.25275 -15.45593 -14.98157 -14.88363 -14.87585 -14.60520 -14.34504 -14.08662 -13.66353 -13.32017 -13.17679 -13.13305 -13.08611 -12.92325 -12.73303 -12.58900 -12.47122 -12.08001 -11.98702 -11.77498 -11.59556 -11.47320 -11.36762 -11.01057 -10.79656 -10.72842 -10.66207 -10.48498 -10.21359 -10.20140 -10.08722 -9.88975 -9.60097 -9.57532 -8.99038 -8.79921 -6.83835 -5.70122 -2.97843 0.86497 1.52157 1.61360 3.08495 3.18939 3.47977 3.52928 3.54764 3.68320 3.93610 3.95774 4.06974 4.41189 4.60364 4.63903 4.73249 4.75347 4.81083 4.85916 4.89575 4.91604 4.96940 5.08475 5.10036 5.15280 5.28778 5.41628 5.45492 5.55583 5.62272 5.65225 5.70147 5.74421 5.84202 5.94107 6.00408 6.08774 6.15431 6.21138 6.34096 6.39528 6.60172 6.66511 6.67542 6.89180 7.02577 7.41254 7.74500 7.76281 8.12553 8.49314 9.60262 10.19960 10.54623 11.52928 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019600 B = 0.001936 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.210986 B =14456.244636 C =15275.218964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.169 3.831 3 C -0.150 4.150 4 C -0.163 4.163 5 N -0.352 5.352 6 C 0.092 3.908 7 C -0.101 4.101 8 C 0.604 3.396 9 O -0.544 6.544 10 N -0.703 5.703 11 C 0.142 3.858 12 H 0.089 0.911 13 C -0.133 4.133 14 C -0.112 4.112 15 C -0.097 4.097 16 H 0.077 0.923 17 C 0.160 3.840 18 N -0.731 5.731 19 C -0.236 4.236 20 H 0.069 0.931 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.123 4.123 28 N -0.205 5.205 29 N -0.062 5.062 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.200 0.800 40 H 0.409 0.591 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.019 0.981 46 H 0.017 0.983 47 H 0.384 0.616 48 H 0.254 0.746 49 H 0.074 0.926 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.218 10.802 -25.746 34.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.087 3.913 3 C -0.207 4.207 4 C -0.222 4.222 5 N -0.138 5.138 6 C -0.065 4.065 7 C -0.241 4.241 8 C 0.388 3.612 9 O -0.421 6.421 10 N -0.353 5.353 11 C 0.038 3.962 12 H 0.107 0.893 13 C -0.171 4.171 14 C -0.150 4.150 15 C -0.116 4.116 16 H 0.095 0.905 17 C 0.033 3.967 18 N -0.375 5.375 19 C -0.368 4.368 20 H 0.087 0.913 21 C -0.212 4.212 22 N -0.583 5.583 23 Si 0.738 3.262 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.161 4.161 28 N -0.078 5.078 29 N -0.041 5.041 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.217 0.783 40 H 0.245 0.755 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.037 0.963 46 H 0.034 0.966 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.092 0.908 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.027 11.537 -25.366 34.317 hybrid contribution 0.512 -0.300 0.303 0.667 sum -19.515 11.237 -25.063 33.694 Atomic orbital electron populations 1.22291 0.91808 1.03708 1.04124 1.21107 0.95216 0.94193 0.80817 1.22001 1.02662 0.92151 1.03889 1.22311 1.02800 1.01279 0.95777 1.50850 1.42108 1.05226 1.15593 1.23227 0.98334 0.86974 0.97948 1.21521 1.12903 0.93867 0.95773 1.16769 0.77334 0.85731 0.81383 1.90794 1.52386 1.34482 1.64413 1.46042 1.61788 1.10519 1.16986 1.21716 0.98332 0.83848 0.92344 0.89266 1.22810 0.94616 1.00719 0.98973 1.22526 0.97549 1.01882 0.93009 1.22170 0.93045 1.00565 0.95849 0.90472 1.20696 0.88765 0.94573 0.92684 1.42350 1.22455 1.31183 1.41560 1.19246 1.02146 1.06217 1.09159 0.91266 1.24734 0.98302 0.97957 1.00207 1.69663 1.21877 1.22256 1.44521 0.86193 0.79085 0.78771 0.82184 1.21808 1.21841 1.20809 1.22460 0.98455 1.02360 0.92872 1.74680 1.12829 0.97972 1.22356 1.81987 1.15578 1.16946 0.89618 0.91166 0.89581 0.91355 0.91135 0.90085 0.90565 0.91113 0.89333 0.91051 0.78309 0.75537 0.90851 0.91680 0.91489 0.91025 0.96326 0.96551 0.78264 0.93611 0.90782 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.53 8.73 37.16 0.32 -0.21 16 2 C 0.17 0.79 1.25 -131.82 -0.16 0.62 16 3 C -0.15 -0.65 8.11 37.16 0.30 -0.35 16 4 C -0.16 -0.48 8.30 37.16 0.31 -0.17 16 5 N -0.35 -2.89 3.44 -48.36 -0.17 -3.06 16 6 C 0.09 0.82 10.43 -16.84 -0.18 0.64 16 7 C -0.10 -1.19 6.99 -83.55 -0.58 -1.78 16 8 C 0.60 7.97 7.81 -12.47 -0.10 7.88 16 9 O -0.54 -8.28 16.53 5.29 0.09 -8.20 16 10 N -0.70 -8.82 5.03 -53.77 -0.27 -9.09 16 11 C 0.14 1.81 3.23 -66.81 -0.22 1.60 16 12 H 0.09 1.16 7.59 -51.93 -0.39 0.77 16 13 C -0.13 -1.81 6.54 -25.00 -0.16 -1.97 16 14 C -0.11 -1.78 6.19 -24.67 -0.15 -1.93 16 15 C -0.10 -1.58 2.89 -88.96 -0.26 -1.83 16 16 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 17 C 0.16 3.27 5.54 -4.04 -0.02 3.25 16 18 N -0.73 -18.86 5.49 -59.91 -0.33 -19.19 16 19 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 22 N -0.93 -28.76 13.06 55.49 0.72 -28.03 16 23 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 27 C -0.12 -1.60 6.14 -25.61 -0.16 -1.76 16 28 N -0.20 -2.60 12.04 32.85 0.40 -2.21 16 29 N -0.06 -0.70 12.91 60.35 0.78 0.07 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.08 0.42 8.06 -51.93 -0.42 0.00 16 36 H 0.07 0.18 7.44 -51.93 -0.39 -0.21 16 37 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.20 1.20 7.63 -52.49 -0.40 0.80 16 40 H 0.41 4.91 7.99 -40.82 -0.33 4.58 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 0.91 8.04 -51.93 -0.42 0.50 16 43 H 0.07 1.11 7.97 -51.93 -0.41 0.70 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.02 0.39 8.02 -51.93 -0.42 -0.03 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.38 10.36 7.64 -40.82 -0.31 10.05 16 48 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 49 H 0.07 0.94 7.31 -51.93 -0.38 0.56 16 50 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 408.56 15.07 6.16 6.16 Total: -1.00 -34.54 408.56 -7.43 -41.97 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -8.48 Total: 7.21 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -1.30 Total: -3.50 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: 1.13 Total: -61.50 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.09 Total: -8.20 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.54 -7.43 -41.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571535948.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.857 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds