Wall clock time and date at job start Tue Mar 31 2020 18:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47435 * 2 1 4 4 C 1.52997 * 109.47044 * 239.99650 * 2 1 3 5 5 N 1.46499 * 109.46958 * 120.00292 * 2 1 3 6 6 C 1.34811 * 126.59702 * 74.99538 * 5 2 1 7 7 C 1.36597 * 106.84110 * 179.97438 * 6 5 2 8 8 C 1.47526 * 125.77239 * 180.02562 * 7 6 5 9 9 O 1.21588 * 119.99767 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00024 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00258 * 179.97438 * 10 8 7 12 12 H 1.08999 * 110.01885 * 325.70810 * 11 10 8 13 13 C 1.54270 * 110.03171 * 87.09470 * 11 10 8 14 14 C 1.55011 * 104.13772 * 95.68625 * 13 11 10 15 15 C 1.54890 * 102.75038 * 37.95421 * 14 13 11 16 16 H 1.09000 * 110.49151 * 80.72426 * 15 14 13 17 17 C 1.53008 * 110.48286 * 203.36487 * 15 14 13 18 18 N 1.46492 * 109.47217 * 289.77620 * 17 15 14 19 19 C 1.36937 * 119.99916 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99890 * 359.97438 * 19 18 17 21 21 C 1.38817 * 120.00155 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99806 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99969 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46858 * 90.00245 * 23 21 19 25 25 H 1.48505 * 109.47178 * 209.99851 * 23 21 19 26 26 H 1.48496 * 109.47349 * 329.99889 * 23 21 19 27 27 C 1.53873 * 110.03643 * 204.31285 * 11 10 8 28 28 N 1.34405 * 108.45964 * 0.26473 * 7 6 5 29 29 N 1.28770 * 109.51977 * 359.54942 * 28 7 6 30 30 H 1.09004 * 109.47381 * 300.00454 * 1 2 3 31 31 H 1.09007 * 109.47118 * 60.00266 * 1 2 3 32 32 H 1.08999 * 109.47312 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47209 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47171 * 300.00085 * 3 2 1 35 35 H 1.09003 * 109.46789 * 59.99774 * 3 2 1 36 36 H 1.09005 * 109.47664 * 300.00645 * 4 2 1 37 37 H 1.09007 * 109.47462 * 60.00468 * 4 2 1 38 38 H 1.09006 * 109.47252 * 180.02562 * 4 2 1 39 39 H 1.07994 * 126.58131 * 359.97438 * 6 5 2 40 40 H 0.96999 * 120.00047 * 0.02562 * 10 8 7 41 41 H 1.08994 * 110.48884 * 214.35934 * 13 11 10 42 42 H 1.09000 * 110.48376 * 336.99635 * 13 11 10 43 43 H 1.08995 * 110.76258 * 279.63431 * 14 13 11 44 44 H 1.09001 * 110.90221 * 156.33405 * 14 13 11 45 45 H 1.09005 * 109.46655 * 49.77975 * 17 15 14 46 46 H 1.09002 * 109.46994 * 169.77336 * 17 15 14 47 47 H 0.97002 * 120.00141 * 359.97438 * 18 17 15 48 48 H 0.97000 * 119.99823 * 180.02562 * 22 21 19 49 49 H 1.09001 * 110.02844 * 0.02562 * 27 11 10 50 50 H 1.09000 * 110.03411 * 121.38353 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 2.0182 -0.6907 1.1961 6 6 2.0219 -2.0216 1.4105 7 6 2.5637 -2.2216 2.6484 8 6 2.7659 -3.5295 3.3002 9 8 2.4381 -4.5510 2.7280 10 7 3.3140 -3.5921 4.5299 11 6 3.5143 -4.8908 5.1774 12 1 2.7096 -5.5727 4.9029 13 6 4.8756 -5.4848 4.7604 14 6 5.8360 -5.0704 5.9043 15 6 4.9468 -5.2102 7.1648 16 1 4.8954 -6.2518 7.4819 17 6 5.4805 -4.3302 8.2970 18 7 6.7402 -4.8872 8.7960 19 6 7.4069 -4.2650 9.8174 20 1 7.0043 -3.3634 10.2549 21 6 8.6009 -4.7924 10.2900 22 7 9.0918 -5.8910 9.7565 23 14 9.5107 -3.9432 11.6829 24 1 9.0435 -4.4871 12.9834 25 1 10.9692 -4.1840 11.5409 26 1 9.2427 -2.4835 11.6318 27 6 3.5592 -4.7166 6.7056 28 7 2.8765 -1.0250 3.1744 29 7 2.5722 -0.0945 2.3379 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6765 -1.7490 -1.2493 37 1 1.6767 -0.2075 -2.1393 38 1 3.1300 -0.7217 -1.2490 39 1 1.6651 -2.7836 0.7334 40 1 3.5752 -2.7771 4.9865 41 1 4.8124 -6.5706 4.6893 42 1 5.2037 -5.0581 3.8125 43 1 6.1664 -4.0396 5.7771 44 1 6.6908 -5.7447 5.9580 45 1 5.6524 -3.3211 7.9225 46 1 4.7515 -4.2980 9.1066 47 1 7.1017 -5.6972 8.4033 48 1 9.9259 -6.2597 10.0869 49 1 3.4315 -3.6657 6.9655 50 1 2.7762 -5.3139 7.1727 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571535948.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:42 Heat of formation + Delta-G solvation = 29.236976 kcal Electronic energy + Delta-G solvation = -28491.112628 eV Core-core repulsion = 24554.052550 eV Total energy + Delta-G solvation = -3937.060078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.32076 -40.89576 -39.12314 -38.28566 -36.44729 -34.71479 -33.11013 -32.88299 -31.82970 -30.10979 -29.09353 -28.42467 -28.41114 -26.27859 -24.82701 -24.48564 -23.88329 -21.97221 -21.30375 -21.17279 -20.51136 -19.06768 -18.58994 -17.52305 -17.33152 -17.08976 -16.69921 -16.42100 -15.78016 -15.69589 -15.63572 -15.26155 -15.05711 -15.00035 -14.78467 -14.57413 -14.25111 -13.66463 -13.45875 -13.39093 -13.31101 -13.19733 -13.15176 -12.80073 -12.78404 -12.68979 -12.52069 -12.45767 -12.34237 -12.17282 -12.06303 -11.96592 -11.85968 -11.59701 -11.51639 -11.45674 -11.28518 -11.17277 -10.89207 -10.42515 -10.01115 -8.96422 -7.93557 -5.21584 0.15095 0.61138 1.03577 1.47179 1.49168 1.57613 2.13084 2.23175 2.57201 3.16928 3.24256 3.39539 3.59187 3.62187 3.64309 3.74282 3.76583 3.90898 3.95352 4.18080 4.20169 4.45225 4.49460 4.54208 4.56579 4.57563 4.59860 4.63294 4.66961 4.70612 4.75565 4.78844 4.79550 4.81191 4.95068 5.02507 5.07187 5.11453 5.17472 5.18896 5.25134 5.25812 5.39066 5.48776 5.54060 5.57002 5.61160 6.29178 6.42698 6.90575 7.13186 7.35244 8.13155 8.36283 9.30084 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019600 B = 0.001936 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.210986 B =14456.244636 C =15275.218964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 C -0.148 4.148 4 C -0.161 4.161 5 N -0.339 5.339 6 C 0.107 3.893 7 C -0.125 4.125 8 C 0.606 3.394 9 O -0.566 6.566 10 N -0.701 5.701 11 C 0.149 3.851 12 H 0.095 0.905 13 C -0.123 4.123 14 C -0.109 4.109 15 C -0.090 4.090 16 H 0.073 0.927 17 C 0.159 3.841 18 N -0.744 5.744 19 C -0.244 4.244 20 H 0.074 0.926 21 C -0.078 4.078 22 N -0.969 5.969 23 Si 0.974 3.026 24 H -0.286 1.286 25 H -0.295 1.295 26 H -0.270 1.270 27 C -0.111 4.111 28 N -0.229 5.229 29 N -0.086 5.086 30 H 0.054 0.946 31 H 0.113 0.887 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.110 0.890 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.058 0.942 39 H 0.229 0.771 40 H 0.411 0.589 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.019 0.981 46 H 0.020 0.980 47 H 0.374 0.626 48 H 0.251 0.749 49 H 0.080 0.920 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.065 11.670 -27.321 37.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.078 3.922 3 C -0.206 4.206 4 C -0.219 4.219 5 N -0.124 5.124 6 C -0.052 4.052 7 C -0.265 4.265 8 C 0.391 3.609 9 O -0.445 6.445 10 N -0.351 5.351 11 C 0.044 3.956 12 H 0.113 0.887 13 C -0.161 4.161 14 C -0.147 4.147 15 C -0.109 4.109 16 H 0.091 0.909 17 C 0.032 3.968 18 N -0.386 5.386 19 C -0.376 4.376 20 H 0.092 0.908 21 C -0.270 4.270 22 N -0.620 5.620 23 Si 0.803 3.197 24 H -0.213 1.213 25 H -0.222 1.222 26 H -0.195 1.195 27 C -0.150 4.150 28 N -0.102 5.102 29 N -0.065 5.065 30 H 0.073 0.927 31 H 0.131 0.869 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.128 0.872 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.133 0.867 38 H 0.077 0.923 39 H 0.246 0.754 40 H 0.247 0.753 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.036 0.964 46 H 0.038 0.962 47 H 0.206 0.794 48 H 0.059 0.941 49 H 0.098 0.902 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.911 12.467 -26.948 36.901 hybrid contribution 1.021 -0.502 0.687 1.329 sum -20.891 11.965 -26.260 35.626 Atomic orbital electron populations 1.22309 0.90309 1.04214 1.04723 1.21593 0.96304 0.94241 0.80083 1.22026 1.01735 0.92250 1.04582 1.22351 1.02039 1.01942 0.95562 1.51203 1.40505 1.05177 1.15557 1.23643 0.96667 0.87649 0.97214 1.21513 1.14761 0.93161 0.97052 1.16917 0.76733 0.86014 0.81235 1.90772 1.53505 1.35308 1.64933 1.46031 1.61595 1.10473 1.17012 1.21614 0.97804 0.84077 0.92067 0.88701 1.22731 0.94386 1.01342 0.97684 1.22428 0.97405 1.00726 0.94095 1.22047 0.94891 0.99527 0.94389 0.90888 1.20866 0.86786 0.95114 0.93990 1.42564 1.24010 1.30887 1.41176 1.19654 1.02344 1.06202 1.09423 0.90798 1.25576 0.99467 0.98939 1.03050 1.69821 1.22201 1.23846 1.46168 0.85133 0.77276 0.78244 0.79077 1.21327 1.22186 1.19539 1.22369 0.96655 1.02970 0.92991 1.74646 1.13738 0.98455 1.23374 1.81908 1.16632 1.17230 0.90756 0.92683 0.86860 0.90899 0.92581 0.87161 0.92095 0.90253 0.86718 0.92282 0.75434 0.75276 0.89912 0.92051 0.92588 0.93034 0.96353 0.96219 0.79402 0.94061 0.90173 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 8.73 71.98 0.63 -0.01 16 2 C 0.16 1.16 1.25 3.60 0.00 1.17 16 3 C -0.15 -1.09 8.11 71.98 0.58 -0.51 16 4 C -0.16 -0.50 8.30 71.98 0.60 0.10 16 5 N -0.34 -5.21 3.44 -306.92 -1.06 -6.27 16 6 C 0.11 1.74 10.43 83.85 0.87 2.61 16 7 C -0.12 -2.88 6.99 40.82 0.29 -2.59 16 8 C 0.61 15.58 7.81 86.69 0.68 16.26 16 9 O -0.57 -16.64 16.53 -3.99 -0.07 -16.70 16 10 N -0.70 -17.08 5.03 -442.28 -2.23 -19.31 16 11 C 0.15 3.61 3.23 45.72 0.15 3.76 16 12 H 0.09 2.29 7.59 -2.39 -0.02 2.27 16 13 C -0.12 -3.27 6.54 31.71 0.21 -3.06 16 14 C -0.11 -3.48 6.19 31.93 0.20 -3.29 16 15 C -0.09 -2.86 2.89 -9.72 -0.03 -2.89 16 16 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 17 C 0.16 6.45 5.54 86.38 0.48 6.93 16 18 N -0.74 -38.88 5.49 -343.44 -1.89 -40.76 16 19 C -0.24 -14.06 9.99 84.03 0.84 -13.22 16 20 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 21 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 22 N -0.97 -60.68 13.06 21.65 0.28 -60.40 16 23 Si 0.97 47.31 29.55 68.60 2.03 49.34 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 26 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 27 C -0.11 -2.72 6.14 31.32 0.19 -2.53 16 28 N -0.23 -5.86 12.04 -49.99 -0.60 -6.46 16 29 N -0.09 -1.96 12.91 37.02 0.48 -1.49 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.11 -0.13 8.14 -2.38 -0.02 -0.15 16 32 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.06 0.65 8.06 -2.39 -0.02 0.63 16 36 H 0.08 0.14 7.44 -2.38 -0.02 0.12 16 37 H 0.11 -0.21 8.14 -2.38 -0.02 -0.23 16 38 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 39 H 0.23 2.18 7.63 -2.91 -0.02 2.16 16 40 H 0.41 9.73 7.99 -92.71 -0.74 8.98 16 41 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.06 1.69 8.04 -2.39 -0.02 1.67 16 43 H 0.06 1.90 7.97 -2.39 -0.02 1.88 16 44 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.02 0.76 8.02 -2.38 -0.02 0.74 16 46 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.37 20.73 7.64 -92.71 -0.71 20.02 16 48 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 49 H 0.08 1.89 7.31 -2.39 -0.02 1.88 16 50 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -75.32 408.56 2.60 -72.72 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -0.51 Total: 30.77 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 6.15 Total: -1.43 kcal Atomic # 7 Polarization: -129.68 SS G_CDS: -5.01 Total: -134.69 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.07 Total: -16.70 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -75.32 2.60 -72.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571535948.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.954 kcal (2) G-P(sol) polarization free energy of solvation -75.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds