Wall clock time and date at job start Tue Mar 31 2020 18:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47333 * 2 1 4 4 C 1.53004 * 109.47207 * 239.99872 * 2 1 3 5 5 N 1.46501 * 109.47402 * 120.00196 * 2 1 3 6 6 C 1.34812 * 126.59336 * 74.99630 * 5 2 1 7 7 C 1.36596 * 106.84024 * 179.97438 * 6 5 2 8 8 C 1.47529 * 125.77074 * 179.97438 * 7 6 5 9 9 O 1.21589 * 119.99925 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99917 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00044 * 180.02562 * 10 8 7 12 12 H 1.08998 * 110.43554 * 32.45262 * 11 10 8 13 13 C 1.54890 * 110.59848 * 269.83809 * 11 10 8 14 14 C 1.54888 * 102.74845 * 203.32368 * 13 11 10 15 15 C 1.54263 * 104.19606 * 37.93987 * 14 13 11 16 16 H 1.09003 * 110.07272 * 95.69767 * 15 14 13 17 17 C 1.53001 * 110.03243 * 217.10385 * 15 14 13 18 18 N 1.46490 * 109.47264 * 292.16632 * 17 15 14 19 19 C 1.36935 * 120.00121 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00139 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00401 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47055 * 180.02562 * 23 21 19 25 25 H 1.48505 * 109.46653 * 299.99639 * 23 21 19 26 26 H 1.48495 * 109.47483 * 60.00002 * 23 21 19 27 27 C 1.53877 * 106.59888 * 336.39198 * 15 14 13 28 28 N 1.34397 * 108.45817 * 0.24491 * 7 6 5 29 29 N 1.28763 * 109.52163 * 359.58596 * 28 7 6 30 30 H 1.08998 * 109.46904 * 299.99893 * 1 2 3 31 31 H 1.08995 * 109.46684 * 60.00112 * 1 2 3 32 32 H 1.08994 * 109.46824 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47370 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47208 * 300.00379 * 3 2 1 35 35 H 1.09006 * 109.46706 * 60.00170 * 3 2 1 36 36 H 1.08989 * 109.47425 * 300.00386 * 4 2 1 37 37 H 1.09003 * 109.46955 * 60.00372 * 4 2 1 38 38 H 1.09002 * 109.47376 * 179.97438 * 4 2 1 39 39 H 1.08005 * 126.58296 * 359.97438 * 6 5 2 40 40 H 0.96997 * 119.99648 * 359.97438 * 10 8 7 41 41 H 1.09003 * 110.75396 * 321.63851 * 13 11 10 42 42 H 1.08997 * 110.75901 * 84.82130 * 13 11 10 43 43 H 1.09000 * 110.48442 * 279.26009 * 14 13 11 44 44 H 1.09000 * 110.48713 * 156.61850 * 14 13 11 45 45 H 1.09003 * 109.46836 * 172.16340 * 17 15 14 46 46 H 1.08999 * 109.47071 * 52.17379 * 17 15 14 47 47 H 0.97000 * 120.00577 * 0.02562 * 18 17 15 48 48 H 0.97001 * 119.99885 * 359.97438 * 22 21 19 49 49 H 1.08996 * 110.03408 * 119.28815 * 27 15 14 50 50 H 1.09004 * 110.02872 * 240.66372 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0184 -0.6906 1.1961 6 6 2.0222 -2.0216 1.4104 7 6 2.5640 -2.2216 2.6483 8 6 2.7653 -3.5295 3.3005 9 8 2.4366 -4.5510 2.7286 10 7 3.3126 -3.5920 4.5305 11 6 3.5131 -4.8908 5.1779 12 1 3.7282 -5.6578 4.4339 13 6 2.2690 -5.2807 6.0141 14 6 2.8508 -6.2753 7.0491 15 6 4.2327 -5.6881 7.4028 16 1 4.1622 -5.0843 8.3075 17 6 5.2458 -6.8168 7.6042 18 7 4.8997 -7.5745 8.8092 19 6 5.6695 -8.6400 9.1927 20 1 6.5322 -8.9215 8.6071 21 6 5.3412 -9.3583 10.3343 22 7 4.2896 -9.0156 11.0478 23 14 6.3919 -10.8114 10.8579 24 1 5.8330 -11.4046 12.0992 25 1 6.3962 -11.8329 9.7800 26 1 7.7814 -10.3522 11.1103 27 6 4.6538 -4.8078 6.2130 28 7 2.8771 -1.0251 3.1741 29 7 2.5723 -0.0946 2.3379 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 1.6767 -1.7488 -1.2493 37 1 1.6768 -0.2074 -2.1393 38 1 3.1301 -0.7209 -1.2495 39 1 1.6653 -2.7836 0.7333 40 1 3.5745 -2.7771 4.9867 41 1 1.8489 -4.4067 6.5120 42 1 1.5190 -5.7645 5.3884 43 1 2.9589 -7.2659 6.6072 44 1 2.2167 -6.3188 7.9347 45 1 6.2441 -6.3934 7.7154 46 1 5.2270 -7.4804 6.7397 47 1 4.1247 -7.3220 9.3350 48 1 3.7442 -8.2608 10.7760 49 1 4.7869 -3.7766 6.5401 50 1 5.5805 -5.1842 5.7796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571535951.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:56 Heat of formation + Delta-G solvation = 52.161784 kcal Electronic energy + Delta-G solvation = -28270.514985 eV Core-core repulsion = 24334.449001 eV Total energy + Delta-G solvation = -3936.065984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.63879 -39.84293 -38.14094 -37.77587 -34.98025 -33.59066 -32.41086 -31.40047 -30.74000 -28.69063 -28.28532 -28.21504 -27.51055 -24.43982 -24.04910 -23.42567 -22.33836 -21.18802 -20.57259 -20.20955 -19.46131 -17.98932 -17.14718 -16.74685 -16.48462 -16.47057 -15.25412 -15.17881 -14.99242 -14.95174 -14.67341 -14.31031 -13.91429 -13.72219 -13.53501 -13.32687 -13.22713 -13.16747 -13.06957 -12.98611 -12.66277 -12.52677 -12.17929 -12.13807 -11.84263 -11.76865 -11.54054 -11.33551 -10.93231 -10.73298 -10.70762 -10.65571 -10.46094 -10.32036 -10.22522 -10.07777 -9.91907 -9.64513 -9.10582 -9.02946 -8.80202 -6.91846 -6.03755 -3.02254 0.79564 1.44185 1.54394 2.99995 3.11797 3.56043 3.60047 3.62388 3.77334 3.86711 3.90075 4.01584 4.34014 4.53994 4.67764 4.69482 4.70280 4.74683 4.82998 4.84922 4.87070 4.90977 5.02616 5.04024 5.08085 5.24249 5.36246 5.38962 5.52144 5.56404 5.60299 5.62640 5.64433 5.70990 5.87105 5.93736 6.02014 6.11224 6.13368 6.21391 6.29137 6.47487 6.54751 6.63168 6.80637 6.93411 7.33015 7.66148 7.87865 8.05732 8.83107 9.31552 10.17914 10.33592 11.45140 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.041455 B = 0.001650 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.267767 B =16968.647519 C =17021.945610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.169 3.831 3 C -0.149 4.149 4 C -0.164 4.164 5 N -0.351 5.351 6 C 0.093 3.907 7 C -0.101 4.101 8 C 0.604 3.396 9 O -0.540 6.540 10 N -0.705 5.705 11 C 0.140 3.860 12 H 0.098 0.902 13 C -0.133 4.133 14 C -0.111 4.111 15 C -0.097 4.097 16 H 0.073 0.927 17 C 0.165 3.835 18 N -0.743 5.743 19 C -0.330 4.330 20 H 0.063 0.937 21 C -0.047 4.047 22 N -0.945 5.945 23 Si 1.080 2.920 24 H -0.285 1.285 25 H -0.296 1.296 26 H -0.296 1.296 27 C -0.121 4.121 28 N -0.207 5.207 29 N -0.062 5.062 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.201 0.799 40 H 0.407 0.593 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.018 0.982 46 H 0.021 0.979 47 H 0.367 0.633 48 H 0.254 0.746 49 H 0.068 0.932 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.222 22.939 -27.681 36.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.087 3.913 3 C -0.207 4.207 4 C -0.222 4.222 5 N -0.137 5.137 6 C -0.064 4.064 7 C -0.241 4.241 8 C 0.388 3.612 9 O -0.416 6.416 10 N -0.355 5.355 11 C 0.036 3.964 12 H 0.116 0.884 13 C -0.172 4.172 14 C -0.149 4.149 15 C -0.116 4.116 16 H 0.091 0.909 17 C 0.037 3.963 18 N -0.389 5.389 19 C -0.461 4.461 20 H 0.081 0.919 21 C -0.245 4.245 22 N -0.591 5.591 23 Si 0.911 3.089 24 H -0.211 1.211 25 H -0.223 1.223 26 H -0.223 1.223 27 C -0.160 4.160 28 N -0.081 5.081 29 N -0.042 5.042 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.218 0.782 40 H 0.242 0.758 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.035 0.965 46 H 0.039 0.961 47 H 0.200 0.800 48 H 0.065 0.935 49 H 0.087 0.913 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.677 22.277 -26.429 35.408 hybrid contribution -0.559 0.848 -1.404 1.733 sum -8.236 23.125 -27.833 37.112 Atomic orbital electron populations 1.22295 0.91745 1.03786 1.04154 1.21123 0.95271 0.94167 0.80782 1.22000 1.02598 0.92165 1.03917 1.22311 1.02757 1.01342 0.95771 1.50845 1.42074 1.05228 1.15569 1.23254 0.98162 0.86979 0.97958 1.21509 1.12964 0.93807 0.95775 1.16774 0.77466 0.85767 0.81217 1.90815 1.51565 1.34452 1.64758 1.45915 1.62268 1.10382 1.16958 1.21996 0.95572 0.84336 0.94527 0.88440 1.22891 0.97136 0.99595 0.97541 1.22317 0.95596 0.98638 0.98333 1.21903 0.95784 0.96790 0.97159 0.90866 1.20733 0.94555 0.90866 0.90137 1.42357 1.33352 1.35526 1.27631 1.20050 1.08557 1.07545 1.09921 0.91864 1.25764 1.00689 1.03560 0.94448 1.70879 1.17410 1.29854 1.41001 0.83238 0.74428 0.75185 0.76026 1.21068 1.22322 1.22337 1.22397 0.97846 1.00400 0.95318 1.74646 1.13054 0.97983 1.22398 1.81961 1.15638 1.16947 0.89669 0.91159 0.89532 0.91301 0.91176 0.90045 0.90581 0.91061 0.89293 0.91073 0.78231 0.75760 0.91453 0.91342 0.90844 0.91434 0.96464 0.96138 0.80010 0.93451 0.91320 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.49 8.74 37.16 0.32 -0.16 16 2 C 0.17 0.71 1.25 -131.82 -0.16 0.54 16 3 C -0.15 -0.56 8.11 37.16 0.30 -0.25 16 4 C -0.16 -0.41 8.30 37.16 0.31 -0.10 16 5 N -0.35 -2.69 3.44 -48.35 -0.17 -2.86 16 6 C 0.09 0.79 10.43 -16.84 -0.18 0.61 16 7 C -0.10 -1.13 6.99 -83.55 -0.58 -1.72 16 8 C 0.60 7.80 7.82 -12.47 -0.10 7.71 16 9 O -0.54 -8.32 16.51 5.29 0.09 -8.24 16 10 N -0.71 -8.43 5.16 -53.24 -0.27 -8.71 16 11 C 0.14 1.83 3.21 -66.28 -0.21 1.62 16 12 H 0.10 1.41 7.55 -51.93 -0.39 1.02 16 13 C -0.13 -1.81 6.58 -24.74 -0.16 -1.97 16 14 C -0.11 -1.76 6.08 -25.07 -0.15 -1.91 16 15 C -0.10 -1.58 2.96 -89.50 -0.26 -1.85 16 16 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 17 C 0.16 3.42 5.31 -4.05 -0.02 3.40 16 18 N -0.74 -19.28 5.45 -59.91 -0.33 -19.60 16 19 C -0.33 -9.62 9.99 -15.06 -0.15 -9.77 16 20 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 21 C -0.05 -1.41 5.50 -17.43 -0.10 -1.51 16 22 N -0.95 -29.89 13.70 55.49 0.76 -29.13 16 23 Si 1.08 26.56 29.92 -169.99 -5.09 21.48 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 27 C -0.12 -1.60 6.19 -25.62 -0.16 -1.75 16 28 N -0.21 -2.43 12.04 32.85 0.40 -2.04 16 29 N -0.06 -0.66 12.91 60.35 0.78 0.12 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.08 0.37 8.06 -51.93 -0.42 -0.05 16 36 H 0.07 0.15 7.44 -51.94 -0.39 -0.23 16 37 H 0.09 0.06 8.14 -51.93 -0.42 -0.37 16 38 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.20 1.16 7.63 -52.48 -0.40 0.76 16 40 H 0.41 4.32 8.05 -40.82 -0.33 3.99 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 1.28 7.76 -51.93 -0.40 0.88 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.02 0.44 8.00 -51.93 -0.42 0.02 16 47 H 0.37 9.66 6.38 -40.82 -0.26 9.40 16 48 H 0.25 7.91 6.77 -40.82 -0.28 7.63 16 49 H 0.07 0.80 7.73 -51.93 -0.40 0.40 16 50 H 0.07 0.99 7.67 -51.93 -0.40 0.59 16 LS Contribution 406.51 15.07 6.13 6.13 Total: -1.00 -35.78 406.51 -7.37 -43.16 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -8.36 Total: 6.80 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -1.31 Total: -7.11 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: 1.17 Total: -62.22 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.24 kcal Atomic # 14 Polarization: 26.56 SS G_CDS: -5.09 Total: 21.48 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.78 -7.37 -43.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571535951.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.317 kcal (2) G-P(sol) polarization free energy of solvation -35.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds