Wall clock time and date at job start Tue Mar 31 2020 18:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47333 * 2 1 4 4 C 1.53004 * 109.47207 * 239.99872 * 2 1 3 5 5 N 1.46501 * 109.47402 * 120.00196 * 2 1 3 6 6 C 1.34812 * 126.59336 * 74.99630 * 5 2 1 7 7 C 1.36596 * 106.84024 * 179.97438 * 6 5 2 8 8 C 1.47529 * 125.77074 * 179.97438 * 7 6 5 9 9 O 1.21589 * 119.99925 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99917 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00044 * 180.02562 * 10 8 7 12 12 H 1.08998 * 110.43554 * 32.45262 * 11 10 8 13 13 C 1.54890 * 110.59848 * 269.83809 * 11 10 8 14 14 C 1.54888 * 102.74845 * 203.32368 * 13 11 10 15 15 C 1.54263 * 104.19606 * 37.93987 * 14 13 11 16 16 H 1.09003 * 110.07272 * 95.69767 * 15 14 13 17 17 C 1.53001 * 110.03243 * 217.10385 * 15 14 13 18 18 N 1.46490 * 109.47264 * 292.16632 * 17 15 14 19 19 C 1.36935 * 120.00121 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00139 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00401 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47055 * 180.02562 * 23 21 19 25 25 H 1.48505 * 109.46653 * 299.99639 * 23 21 19 26 26 H 1.48495 * 109.47483 * 60.00002 * 23 21 19 27 27 C 1.53877 * 106.59888 * 336.39198 * 15 14 13 28 28 N 1.34397 * 108.45817 * 0.24491 * 7 6 5 29 29 N 1.28763 * 109.52163 * 359.58596 * 28 7 6 30 30 H 1.08998 * 109.46904 * 299.99893 * 1 2 3 31 31 H 1.08995 * 109.46684 * 60.00112 * 1 2 3 32 32 H 1.08994 * 109.46824 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47370 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47208 * 300.00379 * 3 2 1 35 35 H 1.09006 * 109.46706 * 60.00170 * 3 2 1 36 36 H 1.08989 * 109.47425 * 300.00386 * 4 2 1 37 37 H 1.09003 * 109.46955 * 60.00372 * 4 2 1 38 38 H 1.09002 * 109.47376 * 179.97438 * 4 2 1 39 39 H 1.08005 * 126.58296 * 359.97438 * 6 5 2 40 40 H 0.96997 * 119.99648 * 359.97438 * 10 8 7 41 41 H 1.09003 * 110.75396 * 321.63851 * 13 11 10 42 42 H 1.08997 * 110.75901 * 84.82130 * 13 11 10 43 43 H 1.09000 * 110.48442 * 279.26009 * 14 13 11 44 44 H 1.09000 * 110.48713 * 156.61850 * 14 13 11 45 45 H 1.09003 * 109.46836 * 172.16340 * 17 15 14 46 46 H 1.08999 * 109.47071 * 52.17379 * 17 15 14 47 47 H 0.97000 * 120.00577 * 0.02562 * 18 17 15 48 48 H 0.97001 * 119.99885 * 359.97438 * 22 21 19 49 49 H 1.08996 * 110.03408 * 119.28815 * 27 15 14 50 50 H 1.09004 * 110.02872 * 240.66372 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0184 -0.6906 1.1961 6 6 2.0222 -2.0216 1.4104 7 6 2.5640 -2.2216 2.6483 8 6 2.7653 -3.5295 3.3005 9 8 2.4366 -4.5510 2.7286 10 7 3.3126 -3.5920 4.5305 11 6 3.5131 -4.8908 5.1779 12 1 3.7282 -5.6578 4.4339 13 6 2.2690 -5.2807 6.0141 14 6 2.8508 -6.2753 7.0491 15 6 4.2327 -5.6881 7.4028 16 1 4.1622 -5.0843 8.3075 17 6 5.2458 -6.8168 7.6042 18 7 4.8997 -7.5745 8.8092 19 6 5.6695 -8.6400 9.1927 20 1 6.5322 -8.9215 8.6071 21 6 5.3412 -9.3583 10.3343 22 7 4.2896 -9.0156 11.0478 23 14 6.3919 -10.8114 10.8579 24 1 5.8330 -11.4046 12.0992 25 1 6.3962 -11.8329 9.7800 26 1 7.7814 -10.3522 11.1103 27 6 4.6538 -4.8078 6.2130 28 7 2.8771 -1.0251 3.1741 29 7 2.5723 -0.0946 2.3379 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 1.6767 -1.7488 -1.2493 37 1 1.6768 -0.2074 -2.1393 38 1 3.1301 -0.7209 -1.2495 39 1 1.6653 -2.7836 0.7333 40 1 3.5745 -2.7771 4.9867 41 1 1.8489 -4.4067 6.5120 42 1 1.5190 -5.7645 5.3884 43 1 2.9589 -7.2659 6.6072 44 1 2.2167 -6.3188 7.9347 45 1 6.2441 -6.3934 7.7154 46 1 5.2270 -7.4804 6.7397 47 1 4.1247 -7.3220 9.3350 48 1 3.7442 -8.2608 10.7760 49 1 4.7869 -3.7766 6.5401 50 1 5.5805 -5.1842 5.7796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571535951.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:55 Heat of formation + Delta-G solvation = 27.441329 kcal Electronic energy + Delta-G solvation = -28271.586944 eV Core-core repulsion = 24334.449001 eV Total energy + Delta-G solvation = -3937.137943 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.35084 -40.90108 -39.28345 -38.30911 -36.74214 -34.98709 -33.11472 -32.87615 -31.85845 -30.09222 -29.00278 -28.44109 -28.39766 -26.08796 -24.82806 -24.48639 -24.14388 -21.94669 -21.63820 -21.05802 -20.76140 -19.31251 -18.62945 -17.61703 -17.37877 -17.15585 -16.92333 -16.14155 -15.81974 -15.75029 -15.66024 -15.32833 -15.18697 -15.00510 -14.93368 -14.83613 -14.32087 -13.71991 -13.62687 -13.41652 -13.34375 -13.20961 -13.07748 -12.81381 -12.79710 -12.59896 -12.51994 -12.47163 -12.37528 -12.10686 -11.98876 -11.86244 -11.82149 -11.77478 -11.50339 -11.30656 -11.29911 -11.15368 -10.90163 -10.45868 -10.05521 -9.09236 -8.39750 -5.32608 0.11917 0.57596 1.00250 1.58613 1.69070 1.85591 2.05026 2.18307 2.72292 3.12183 3.21809 3.39856 3.51598 3.53759 3.62660 3.71514 3.75073 3.81315 3.90653 3.98449 4.17244 4.31532 4.41551 4.44321 4.50168 4.55168 4.55458 4.58036 4.59064 4.65749 4.67243 4.73818 4.77673 4.79359 4.85155 4.96947 5.01632 5.05984 5.07026 5.17321 5.18013 5.24772 5.31476 5.44593 5.48824 5.51507 5.59270 6.38387 6.50452 6.87651 7.09438 7.11166 8.02207 8.13163 9.12542 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.041455 B = 0.001650 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.267767 B =16968.647519 C =17021.945610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.159 3.841 3 C -0.148 4.148 4 C -0.161 4.161 5 N -0.338 5.338 6 C 0.106 3.894 7 C -0.123 4.123 8 C 0.605 3.395 9 O -0.569 6.569 10 N -0.698 5.698 11 C 0.147 3.853 12 H 0.084 0.916 13 C -0.121 4.121 14 C -0.108 4.108 15 C -0.088 4.088 16 H 0.072 0.928 17 C 0.163 3.837 18 N -0.755 5.755 19 C -0.338 4.338 20 H 0.065 0.935 21 C -0.105 4.105 22 N -0.974 5.974 23 Si 1.129 2.871 24 H -0.292 1.292 25 H -0.278 1.278 26 H -0.277 1.277 27 C -0.110 4.110 28 N -0.225 5.225 29 N -0.083 5.083 30 H 0.054 0.946 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.109 0.891 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.060 0.940 39 H 0.227 0.773 40 H 0.415 0.585 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.018 0.982 46 H 0.016 0.984 47 H 0.361 0.639 48 H 0.244 0.756 49 H 0.092 0.908 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.252 24.026 -29.906 39.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.078 3.922 3 C -0.205 4.205 4 C -0.219 4.219 5 N -0.124 5.124 6 C -0.052 4.052 7 C -0.263 4.263 8 C 0.391 3.609 9 O -0.447 6.447 10 N -0.348 5.348 11 C 0.043 3.957 12 H 0.103 0.897 13 C -0.160 4.160 14 C -0.147 4.147 15 C -0.107 4.107 16 H 0.090 0.910 17 C 0.036 3.964 18 N -0.400 5.400 19 C -0.469 4.469 20 H 0.083 0.917 21 C -0.296 4.296 22 N -0.622 5.622 23 Si 0.954 3.046 24 H -0.217 1.217 25 H -0.205 1.205 26 H -0.203 1.203 27 C -0.149 4.149 28 N -0.099 5.099 29 N -0.062 5.062 30 H 0.074 0.926 31 H 0.131 0.869 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.128 0.872 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.132 0.868 38 H 0.079 0.921 39 H 0.243 0.757 40 H 0.252 0.748 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.036 0.964 46 H 0.034 0.966 47 H 0.194 0.806 48 H 0.054 0.946 49 H 0.110 0.890 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.692 23.438 -28.697 37.842 hybrid contribution -0.580 0.592 -0.838 1.179 sum -8.272 24.031 -29.535 38.965 Atomic orbital electron populations 1.22316 0.90478 1.04134 1.04746 1.21594 0.96193 0.94339 0.80062 1.22024 1.01835 0.92071 1.04605 1.22351 1.02138 1.01871 0.95572 1.51190 1.40555 1.05095 1.15586 1.23633 0.96619 0.87696 0.97286 1.21412 1.14900 0.93030 0.96969 1.16967 0.76780 0.86078 0.81115 1.90795 1.52926 1.35562 1.65455 1.45801 1.61994 1.10169 1.16834 1.21776 0.95176 0.84672 0.94101 0.89741 1.22786 0.97188 0.99235 0.96785 1.22226 0.95559 0.98316 0.98561 1.21785 0.94697 0.95641 0.98587 0.90970 1.20902 0.95870 0.91663 0.87927 1.42562 1.32906 1.35494 1.29030 1.20425 1.08601 1.08119 1.09759 0.91746 1.27252 1.01282 1.06185 0.94900 1.70991 1.18739 1.30372 1.42125 0.82615 0.73684 0.72591 0.75753 1.21748 1.20455 1.20321 1.22296 0.97778 1.00954 0.93830 1.74612 1.13783 0.98239 1.23240 1.81888 1.16496 1.17169 0.90680 0.92640 0.86866 0.91079 0.92361 0.87220 0.92029 0.90423 0.86753 0.92078 0.75675 0.74798 0.90191 0.91627 0.92837 0.92275 0.96403 0.96560 0.80642 0.94601 0.88979 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.57 8.74 71.98 0.63 0.06 16 2 C 0.16 1.00 1.25 3.60 0.00 1.01 16 3 C -0.15 -0.86 8.11 71.98 0.58 -0.28 16 4 C -0.16 -0.36 8.30 71.98 0.60 0.23 16 5 N -0.34 -4.76 3.44 -306.89 -1.06 -5.82 16 6 C 0.11 1.64 10.43 83.85 0.87 2.51 16 7 C -0.12 -2.67 6.99 40.82 0.29 -2.38 16 8 C 0.61 15.25 7.82 86.69 0.68 15.92 16 9 O -0.57 -17.27 16.51 -4.00 -0.07 -17.33 16 10 N -0.70 -15.99 5.16 -440.63 -2.27 -18.26 16 11 C 0.15 3.73 3.21 46.06 0.15 3.88 16 12 H 0.08 2.42 7.55 -2.39 -0.02 2.40 16 13 C -0.12 -3.21 6.58 31.89 0.21 -3.00 16 14 C -0.11 -3.47 6.08 31.67 0.19 -3.28 16 15 C -0.09 -2.83 2.96 -10.07 -0.03 -2.86 16 16 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 17 C 0.16 6.79 5.31 86.38 0.46 7.24 16 18 N -0.76 -39.75 5.45 -343.47 -1.87 -41.62 16 19 C -0.34 -19.80 9.99 84.03 0.84 -18.96 16 20 H 0.06 3.69 7.83 -2.91 -0.02 3.67 16 21 C -0.11 -6.29 5.50 84.86 0.47 -5.83 16 22 N -0.97 -62.48 13.70 21.65 0.30 -62.19 16 23 Si 1.13 53.29 29.92 68.60 2.05 55.34 16 24 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 25 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 26 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 27 C -0.11 -2.75 6.19 31.32 0.19 -2.56 16 28 N -0.23 -5.21 12.04 -49.99 -0.60 -5.81 16 29 N -0.08 -1.71 12.91 37.02 0.48 -1.24 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.11 -0.18 8.14 -2.39 -0.02 -0.19 16 32 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 35 H 0.06 0.55 8.06 -2.38 -0.02 0.53 16 36 H 0.08 0.10 7.44 -2.39 -0.02 0.09 16 37 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 38 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.23 2.13 7.63 -2.91 -0.02 2.10 16 40 H 0.41 8.27 8.05 -92.71 -0.75 7.52 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.05 1.92 7.76 -2.39 -0.02 1.90 16 44 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.02 0.75 8.14 -2.39 -0.02 0.74 16 46 H 0.02 0.70 8.00 -2.39 -0.02 0.68 16 47 H 0.36 19.55 6.38 -92.71 -0.59 18.96 16 48 H 0.24 15.57 6.77 -92.71 -0.63 14.94 16 49 H 0.09 1.91 7.73 -2.39 -0.02 1.90 16 50 H 0.08 1.94 7.67 -2.38 -0.02 1.92 16 Total: -1.00 -78.13 406.51 2.84 -75.29 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: -0.25 Total: 29.93 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 6.13 Total: -8.30 kcal Atomic # 7 Polarization: -129.91 SS G_CDS: -5.03 Total: -134.94 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.07 Total: -17.33 kcal Atomic # 14 Polarization: 53.29 SS G_CDS: 2.05 Total: 55.34 kcal Total: -78.13 2.84 -75.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571535951.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.730 kcal (2) G-P(sol) polarization free energy of solvation -78.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds