Wall clock time and date at job start Tue Mar 31 2020 19:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46684 * 2 1 4 4 N 1.46501 * 109.46750 * 180.02562 * 3 2 1 5 5 C 1.34783 * 119.99601 * 275.40975 * 4 3 2 6 6 O 1.21557 * 119.99439 * 185.60486 * 5 4 3 7 7 C 1.47798 * 120.00119 * 5.60375 * 5 4 3 8 8 C 1.40923 * 127.23455 * 175.08625 * 7 5 4 9 9 N 1.31133 * 105.77443 * 179.97438 * 8 7 5 10 10 N 1.28522 * 109.06047 * 0.02562 * 9 8 7 11 11 C 1.46497 * 124.44467 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.46832 * 90.02816 * 11 10 9 13 13 N 1.28588 * 111.10923 * 359.74692 * 10 9 8 14 14 C 1.46496 * 120.00274 * 95.41749 * 4 3 2 15 15 C 1.53075 * 109.45717 * 119.78629 * 14 4 3 16 16 C 1.53190 * 109.29667 * 181.24545 * 15 14 4 17 17 N 1.46927 * 108.88910 * 305.57352 * 16 15 14 18 18 C 1.36940 * 120.63212 * 233.51459 * 17 16 15 19 19 H 1.08000 * 119.99736 * 144.61366 * 18 17 16 20 20 C 1.38811 * 119.99887 * 324.61792 * 18 17 16 21 21 N 1.31616 * 119.99949 * 4.22159 * 20 18 17 22 22 Si 1.86800 * 120.00048 * 184.21886 * 20 18 17 23 23 H 1.48502 * 109.46694 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46975 * 119.99809 * 22 20 18 25 25 H 1.48493 * 109.47216 * 240.00077 * 22 20 18 26 26 C 1.46932 * 118.73914 * 53.54357 * 17 16 15 27 27 C 1.53049 * 109.45786 * 239.99836 * 14 4 3 28 28 H 1.08999 * 109.46695 * 299.99742 * 1 2 3 29 29 H 1.08993 * 109.46961 * 60.00496 * 1 2 3 30 30 H 1.09004 * 109.46403 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47367 * 240.00189 * 2 1 3 32 32 H 1.08993 * 109.47325 * 119.99904 * 2 1 3 33 33 H 1.08993 * 109.47064 * 60.00003 * 3 2 1 34 34 H 1.09003 * 109.47106 * 299.99991 * 3 2 1 35 35 H 1.07997 * 127.11327 * 359.96721 * 8 7 5 36 36 H 1.08997 * 109.47401 * 210.02996 * 11 10 9 37 37 H 1.08999 * 109.46978 * 330.03010 * 11 10 9 38 38 H 1.09000 * 109.46482 * 180.02562 * 12 11 10 39 39 H 1.09004 * 109.47040 * 299.99937 * 12 11 10 40 40 H 1.08999 * 109.47180 * 60.00318 * 12 11 10 41 41 H 1.09006 * 109.45942 * 359.96418 * 14 4 3 42 42 H 1.08996 * 109.38679 * 61.36381 * 15 14 4 43 43 H 1.09004 * 109.61998 * 301.25704 * 15 14 4 44 44 H 1.08995 * 109.58625 * 185.71911 * 16 15 14 45 45 H 1.08995 * 109.59091 * 65.43115 * 16 15 14 46 46 H 0.97005 * 119.99671 * 179.97438 * 21 20 18 47 47 H 1.08995 * 109.58943 * 66.17394 * 26 17 16 48 48 H 1.08997 * 109.58264 * 186.46134 * 26 17 16 49 49 H 1.08997 * 109.49894 * 58.65912 * 27 14 4 50 50 H 1.09001 * 109.49411 * 298.55842 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1793 1.3324 1.1612 6 8 5.3905 1.4345 1.1729 7 6 3.4461 1.0874 2.4209 8 6 3.9972 0.8527 3.6965 9 7 2.9752 0.6909 4.5020 10 7 1.8870 0.8064 3.8280 11 6 0.5427 0.6851 4.3974 12 6 0.0597 2.0605 4.8620 13 7 2.1331 1.0471 2.5890 14 6 4.2370 1.5626 -1.2639 15 6 5.1129 2.8175 -1.2285 16 6 5.8527 2.9562 -2.5627 17 7 6.5868 1.7121 -2.8311 18 6 7.9283 1.7387 -3.1050 19 1 8.5665 0.9402 -2.7563 20 6 8.4678 2.7919 -3.8306 21 7 7.7065 3.8058 -4.1838 22 14 10.2743 2.7704 -4.3055 23 1 10.9061 1.5283 -3.7923 24 1 10.3976 2.8132 -5.7847 25 1 10.9548 3.9520 -3.7176 26 6 5.8541 0.4389 -2.8008 27 6 5.1167 0.3261 -1.4628 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 5.0446 0.8140 3.9567 36 1 -0.1389 0.2971 3.6405 37 1 0.5684 0.0029 5.2472 38 1 -0.9404 1.9701 5.2861 39 1 0.7413 2.4484 5.6190 40 1 0.0340 2.7427 4.0122 41 1 3.5282 1.6403 -2.0884 42 1 5.8368 2.7307 -0.4183 43 1 4.4878 3.6956 -1.0661 44 1 6.5535 3.7892 -2.5070 45 1 5.1341 3.1362 -3.3621 46 1 8.0836 4.5420 -4.6906 47 1 5.1337 0.4123 -3.6184 48 1 6.5555 -0.3889 -2.9048 49 1 4.4929 -0.5677 -1.4654 50 1 5.8423 0.2617 -0.6519 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661086817.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:30 Heat of formation + Delta-G solvation = 104.118384 kcal Electronic energy + Delta-G solvation = -30632.425505 eV Core-core repulsion = 26698.612528 eV Total energy + Delta-G solvation = -3933.812976 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.77296 -39.91562 -36.94329 -35.98206 -35.12536 -33.38237 -32.69756 -31.88750 -30.71102 -29.87502 -29.33537 -26.22888 -25.71610 -24.69113 -23.70240 -22.12878 -21.96452 -21.69512 -21.54404 -19.63825 -18.81722 -17.63920 -17.02075 -16.83320 -16.39457 -15.56589 -15.27031 -14.92637 -14.72766 -14.54733 -14.46478 -13.98628 -13.65544 -13.47822 -13.26943 -13.13267 -12.89945 -12.69104 -12.55689 -12.43962 -12.26069 -11.97622 -11.84947 -11.80270 -11.40847 -11.33351 -11.09894 -10.97650 -10.83486 -10.71385 -10.68205 -10.33886 -10.25614 -10.03041 -9.90717 -9.65718 -9.54602 -9.49791 -9.27039 -8.39650 -8.18092 -6.43953 -5.68260 -3.20276 1.28049 1.88378 1.95117 3.14985 3.41702 3.44031 3.50920 3.53690 3.78269 4.34506 4.35483 4.57256 4.61770 4.69027 4.90329 4.95839 5.00813 5.07408 5.19618 5.29903 5.39003 5.48396 5.50277 5.52033 5.58850 5.66788 5.67833 5.72194 5.82075 5.89164 5.93171 5.95458 6.06193 6.21946 6.26770 6.45007 6.49445 6.50793 6.65962 6.72771 6.86593 6.95695 7.13766 7.19443 7.53404 7.71833 7.89667 7.93759 8.01632 8.41690 8.64622 9.35551 9.94727 10.54320 11.37826 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.002903 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.130340 B = 9644.256026 C =10274.178145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.107 3.893 4 N -0.596 5.596 5 C 0.600 3.400 6 O -0.509 6.509 7 C -0.038 4.038 8 C 0.032 3.968 9 N -0.294 5.294 10 N -0.149 5.149 11 C 0.134 3.866 12 C -0.171 4.171 13 N -0.244 5.244 14 C 0.161 3.839 15 C -0.157 4.157 16 C 0.172 3.828 17 N -0.592 5.592 18 C -0.246 4.246 19 H 0.063 0.937 20 C 0.006 3.994 21 N -0.906 5.906 22 Si 0.902 3.098 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.151 3.849 27 C -0.146 4.146 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.206 0.794 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.102 0.898 45 H 0.012 0.988 46 H 0.252 0.748 47 H 0.015 0.985 48 H 0.055 0.945 49 H 0.045 0.955 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.197 -6.118 16.038 26.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C -0.017 4.017 4 N -0.327 5.327 5 C 0.384 3.616 6 O -0.382 6.382 7 C -0.201 4.201 8 C -0.151 4.151 9 N -0.133 5.133 10 N -0.052 5.052 11 C 0.015 3.985 12 C -0.230 4.230 13 N -0.092 5.092 14 C 0.060 3.940 15 C -0.197 4.197 16 C 0.045 3.955 17 N -0.315 5.315 18 C -0.376 4.376 19 H 0.081 0.919 20 C -0.192 4.192 21 N -0.551 5.551 22 Si 0.732 3.268 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.024 3.976 27 C -0.186 4.186 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.223 0.777 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.061 0.939 44 H 0.120 0.880 45 H 0.030 0.970 46 H 0.063 0.937 47 H 0.033 0.967 48 H 0.073 0.927 49 H 0.064 0.936 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.719 -6.023 16.454 27.134 hybrid contribution 1.500 0.074 -0.566 1.606 sum -19.218 -5.949 15.887 25.635 Atomic orbital electron populations 1.21635 0.95511 1.01293 1.01637 1.21840 0.95770 0.97419 1.02051 1.21861 0.79321 0.97142 1.03329 1.48171 1.06674 1.71300 1.06573 1.16735 0.86114 0.77616 0.81119 1.90839 1.12558 1.49451 1.85307 1.23339 0.89274 1.09963 0.97543 1.24834 0.99903 1.01815 0.88594 1.73974 0.92839 1.20106 1.26427 1.48358 1.07471 1.46746 1.02604 1.22034 0.75939 1.00425 1.00145 1.22192 1.02516 0.95492 1.02786 1.74617 1.17182 1.16209 1.01183 1.21210 0.93176 0.97321 0.82333 1.22731 0.99099 0.94121 1.03775 1.20930 0.94230 0.91277 0.89026 1.43993 1.05630 1.00409 1.81424 1.19211 0.83638 1.07950 1.26795 0.91891 1.25301 0.98129 0.98042 0.97705 1.69902 1.34584 1.09152 1.41494 0.86204 0.85004 0.77523 0.78033 1.20243 1.21626 1.21727 1.20850 0.94125 0.90305 0.92299 1.22435 0.99115 0.95179 1.01849 0.92759 0.92747 0.93046 0.92076 0.92064 0.89006 0.90681 0.77725 0.87276 0.87296 0.89548 0.91336 0.91266 0.90429 0.90030 0.93858 0.88020 0.97029 0.93711 0.96681 0.92671 0.93626 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.13 -1.43 5.69 -26.73 -0.15 -1.58 16 3 C 0.11 1.30 4.97 -4.04 -0.02 1.28 16 4 N -0.60 -9.33 2.43 -167.15 -0.41 -9.74 16 5 C 0.60 10.14 7.05 -12.35 -0.09 10.06 16 6 O -0.51 -10.35 13.23 5.32 0.07 -10.28 16 7 C -0.04 -0.54 6.51 -82.68 -0.54 -1.08 16 8 C 0.03 0.41 12.05 -16.83 -0.20 0.21 16 9 N -0.29 -3.47 12.01 30.90 0.37 -3.10 16 10 N -0.15 -1.52 3.94 -10.61 -0.04 -1.56 16 11 C 0.13 0.73 7.24 -4.04 -0.03 0.70 16 12 C -0.17 -0.79 10.24 37.16 0.38 -0.41 16 13 N -0.24 -2.87 7.29 33.42 0.24 -2.62 16 14 C 0.16 2.92 2.50 -67.87 -0.17 2.75 16 15 C -0.16 -3.34 5.28 -26.59 -0.14 -3.48 16 16 C 0.17 4.30 5.26 -3.71 -0.02 4.28 16 17 N -0.59 -15.52 3.00 -172.32 -0.52 -16.04 16 18 C -0.25 -7.03 9.55 -15.06 -0.14 -7.17 16 19 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 20 C 0.01 0.18 5.32 -17.43 -0.09 0.08 16 21 N -0.91 -26.74 10.62 55.49 0.59 -26.15 16 22 Si 0.90 22.33 29.56 -169.99 -5.02 17.31 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 C 0.15 3.33 6.52 -3.71 -0.02 3.31 16 27 C -0.15 -2.81 5.27 -26.61 -0.14 -2.95 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.74 6.57 -51.93 -0.34 0.40 16 33 H 0.09 1.09 5.67 -51.93 -0.29 0.79 16 34 H 0.07 0.85 7.81 -51.93 -0.41 0.45 16 35 H 0.21 2.29 8.06 -52.49 -0.42 1.87 16 36 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 1.33 7.72 -51.93 -0.40 0.93 16 42 H 0.08 1.94 6.03 -51.93 -0.31 1.63 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.10 2.88 5.91 -51.93 -0.31 2.57 16 45 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.05 1.20 7.93 -51.93 -0.41 0.79 16 49 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 50 H 0.08 1.71 6.40 -51.93 -0.33 1.38 16 LS Contribution 390.85 15.07 5.89 5.89 Total: -1.00 -33.38 390.85 -8.11 -41.49 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -8.27 Total: -0.39 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -1.01 Total: 5.20 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: 0.24 Total: -59.21 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.07 Total: -10.28 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.38 -8.11 -41.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661086817.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.606 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds