Wall clock time and date at job start Tue Mar 31 2020 19:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46684 * 2 1 4 4 N 1.46501 * 109.46750 * 180.02562 * 3 2 1 5 5 C 1.34783 * 119.99601 * 275.40975 * 4 3 2 6 6 O 1.21557 * 119.99439 * 185.60486 * 5 4 3 7 7 C 1.47798 * 120.00119 * 5.60375 * 5 4 3 8 8 C 1.40923 * 127.23455 * 175.08625 * 7 5 4 9 9 N 1.31133 * 105.77443 * 179.97438 * 8 7 5 10 10 N 1.28522 * 109.06047 * 0.02562 * 9 8 7 11 11 C 1.46497 * 124.44467 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.46832 * 90.02816 * 11 10 9 13 13 N 1.28588 * 111.10923 * 359.74692 * 10 9 8 14 14 C 1.46496 * 120.00274 * 95.41749 * 4 3 2 15 15 C 1.53075 * 109.45717 * 119.78629 * 14 4 3 16 16 C 1.53190 * 109.29667 * 181.24545 * 15 14 4 17 17 N 1.46927 * 108.88910 * 305.57352 * 16 15 14 18 18 C 1.36940 * 120.63212 * 233.51459 * 17 16 15 19 19 H 1.08000 * 119.99736 * 144.61366 * 18 17 16 20 20 C 1.38811 * 119.99887 * 324.61792 * 18 17 16 21 21 N 1.31616 * 119.99949 * 4.22159 * 20 18 17 22 22 Si 1.86800 * 120.00048 * 184.21886 * 20 18 17 23 23 H 1.48502 * 109.46694 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46975 * 119.99809 * 22 20 18 25 25 H 1.48493 * 109.47216 * 240.00077 * 22 20 18 26 26 C 1.46932 * 118.73914 * 53.54357 * 17 16 15 27 27 C 1.53049 * 109.45786 * 239.99836 * 14 4 3 28 28 H 1.08999 * 109.46695 * 299.99742 * 1 2 3 29 29 H 1.08993 * 109.46961 * 60.00496 * 1 2 3 30 30 H 1.09004 * 109.46403 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47367 * 240.00189 * 2 1 3 32 32 H 1.08993 * 109.47325 * 119.99904 * 2 1 3 33 33 H 1.08993 * 109.47064 * 60.00003 * 3 2 1 34 34 H 1.09003 * 109.47106 * 299.99991 * 3 2 1 35 35 H 1.07997 * 127.11327 * 359.96721 * 8 7 5 36 36 H 1.08997 * 109.47401 * 210.02996 * 11 10 9 37 37 H 1.08999 * 109.46978 * 330.03010 * 11 10 9 38 38 H 1.09000 * 109.46482 * 180.02562 * 12 11 10 39 39 H 1.09004 * 109.47040 * 299.99937 * 12 11 10 40 40 H 1.08999 * 109.47180 * 60.00318 * 12 11 10 41 41 H 1.09006 * 109.45942 * 359.96418 * 14 4 3 42 42 H 1.08996 * 109.38679 * 61.36381 * 15 14 4 43 43 H 1.09004 * 109.61998 * 301.25704 * 15 14 4 44 44 H 1.08995 * 109.58625 * 185.71911 * 16 15 14 45 45 H 1.08995 * 109.59091 * 65.43115 * 16 15 14 46 46 H 0.97005 * 119.99671 * 179.97438 * 21 20 18 47 47 H 1.08995 * 109.58943 * 66.17394 * 26 17 16 48 48 H 1.08997 * 109.58264 * 186.46134 * 26 17 16 49 49 H 1.08997 * 109.49894 * 58.65912 * 27 14 4 50 50 H 1.09001 * 109.49411 * 298.55842 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1793 1.3324 1.1612 6 8 5.3905 1.4345 1.1729 7 6 3.4461 1.0874 2.4209 8 6 3.9972 0.8527 3.6965 9 7 2.9752 0.6909 4.5020 10 7 1.8870 0.8064 3.8280 11 6 0.5427 0.6851 4.3974 12 6 0.0597 2.0605 4.8620 13 7 2.1331 1.0471 2.5890 14 6 4.2370 1.5626 -1.2639 15 6 5.1129 2.8175 -1.2285 16 6 5.8527 2.9562 -2.5627 17 7 6.5868 1.7121 -2.8311 18 6 7.9283 1.7387 -3.1050 19 1 8.5665 0.9402 -2.7563 20 6 8.4678 2.7919 -3.8306 21 7 7.7065 3.8058 -4.1838 22 14 10.2743 2.7704 -4.3055 23 1 10.9061 1.5283 -3.7923 24 1 10.3976 2.8132 -5.7847 25 1 10.9548 3.9520 -3.7176 26 6 5.8541 0.4389 -2.8008 27 6 5.1167 0.3261 -1.4628 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 5.0446 0.8140 3.9567 36 1 -0.1389 0.2971 3.6405 37 1 0.5684 0.0029 5.2472 38 1 -0.9404 1.9701 5.2861 39 1 0.7413 2.4484 5.6190 40 1 0.0340 2.7427 4.0122 41 1 3.5282 1.6403 -2.0884 42 1 5.8368 2.7307 -0.4183 43 1 4.4878 3.6956 -1.0661 44 1 6.5535 3.7892 -2.5070 45 1 5.1341 3.1362 -3.3621 46 1 8.0836 4.5420 -4.6906 47 1 5.1337 0.4123 -3.6184 48 1 6.5555 -0.3889 -2.9048 49 1 4.4929 -0.5677 -1.4654 50 1 5.8423 0.2617 -0.6519 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661086817.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:29 Heat of formation + Delta-G solvation = 83.776747 kcal Electronic energy + Delta-G solvation = -30633.307585 eV Core-core repulsion = 26698.612528 eV Total energy + Delta-G solvation = -3934.695056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.69365 -41.27347 -38.64224 -37.24647 -35.80601 -34.95363 -33.61875 -33.42296 -31.85048 -31.45580 -30.94263 -27.37579 -27.14267 -25.71406 -24.91897 -23.81309 -23.48375 -22.64097 -22.40134 -21.18915 -20.23667 -18.83108 -18.47561 -17.90282 -17.52848 -17.11168 -16.69585 -16.06160 -15.88721 -15.64567 -15.47712 -15.33580 -15.23909 -14.94896 -14.75636 -14.42461 -14.11499 -13.92788 -13.67141 -13.31851 -13.22218 -13.05968 -12.94420 -12.89332 -12.78153 -12.64534 -12.55946 -12.31294 -12.27013 -12.12728 -11.95472 -11.85271 -11.81300 -11.68406 -11.42343 -11.35466 -11.09651 -10.81771 -10.50700 -10.45068 -9.57119 -8.53569 -7.84528 -5.40322 0.26067 0.89403 1.23071 1.46290 1.46725 1.58148 1.94693 2.19793 2.50913 2.85096 3.29882 3.55866 3.72959 3.91260 3.94899 3.98362 4.04815 4.08329 4.11487 4.25991 4.27839 4.36614 4.47576 4.56532 4.58760 4.59183 4.67540 4.71897 4.77557 4.82808 4.88482 4.91712 4.96056 5.01538 5.04631 5.10747 5.18688 5.19140 5.24878 5.31273 5.44267 5.47845 5.60890 5.65829 5.68795 5.72489 5.86432 6.41366 6.48612 7.02389 7.18060 7.19900 7.87707 8.41289 9.19192 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.002903 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.130340 B = 9644.256026 C =10274.178145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.125 4.125 3 C 0.105 3.895 4 N -0.593 5.593 5 C 0.598 3.402 6 O -0.554 6.554 7 C -0.064 4.064 8 C 0.022 3.978 9 N -0.296 5.296 10 N -0.133 5.133 11 C 0.118 3.882 12 C -0.166 4.166 13 N -0.229 5.229 14 C 0.170 3.830 15 C -0.142 4.142 16 C 0.181 3.819 17 N -0.612 5.612 18 C -0.264 4.264 19 H 0.058 0.942 20 C -0.045 4.045 21 N -0.932 5.932 22 Si 0.969 3.031 23 H -0.269 1.269 24 H -0.286 1.286 25 H -0.291 1.291 26 C 0.149 3.851 27 C -0.131 4.131 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.211 0.789 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.097 0.903 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.003 0.997 46 H 0.251 0.749 47 H 0.028 0.972 48 H 0.052 0.948 49 H 0.074 0.926 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.022 -7.235 16.982 29.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.164 4.164 3 C -0.017 4.017 4 N -0.323 5.323 5 C 0.384 3.616 6 O -0.431 6.431 7 C -0.225 4.225 8 C -0.160 4.160 9 N -0.136 5.136 10 N -0.038 5.038 11 C 0.002 3.998 12 C -0.224 4.224 13 N -0.079 5.079 14 C 0.068 3.932 15 C -0.182 4.182 16 C 0.055 3.945 17 N -0.336 5.336 18 C -0.394 4.394 19 H 0.075 0.925 20 C -0.240 4.240 21 N -0.578 5.578 22 Si 0.797 3.203 23 H -0.194 1.194 24 H -0.212 1.212 25 H -0.218 1.218 26 C 0.023 3.977 27 C -0.171 4.171 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.228 0.772 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.135 0.865 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.115 0.885 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.021 0.979 46 H 0.060 0.940 47 H 0.045 0.955 48 H 0.071 0.929 49 H 0.092 0.908 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.590 -7.164 17.413 30.183 hybrid contribution 2.235 0.407 -0.752 2.393 sum -21.356 -6.757 16.661 27.916 Atomic orbital electron populations 1.21598 0.93132 1.02177 1.02581 1.21760 0.97707 0.95872 1.01033 1.22111 0.76819 0.98531 1.04282 1.48117 1.08095 1.70790 1.05305 1.17069 0.85761 0.76674 0.82146 1.90818 1.14602 1.51492 1.86141 1.22884 0.90191 1.12701 0.96720 1.24995 1.00692 1.01929 0.88392 1.73990 0.93071 1.20307 1.26277 1.48981 1.08596 1.44182 1.02051 1.22644 0.73965 1.01625 1.01613 1.22177 1.03818 0.94457 1.01961 1.74547 1.15822 1.15542 1.01982 1.20926 0.93124 0.94954 0.84228 1.22451 0.98889 0.96616 1.00275 1.20646 0.93264 0.90002 0.90616 1.44234 1.05422 1.01980 1.81919 1.19454 0.85066 1.07939 1.26940 0.92461 1.26031 1.02369 0.97719 0.97897 1.70083 1.36210 1.09499 1.41978 0.85182 0.80070 0.77541 0.77551 1.19383 1.21203 1.21750 1.20974 0.94211 0.88376 0.94110 1.22220 0.98784 0.97031 0.99045 0.91580 0.92077 0.92208 0.92896 0.93296 0.88415 0.89333 0.77210 0.84854 0.85239 0.86477 0.92757 0.92402 0.88529 0.92881 0.92527 0.91845 0.97886 0.93986 0.95455 0.92909 0.90770 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.91 71.98 0.71 -1.03 16 2 C -0.12 -2.38 5.69 30.60 0.17 -2.20 16 3 C 0.10 2.30 4.97 86.38 0.43 2.73 16 4 N -0.59 -18.08 2.43 -801.02 -1.95 -20.02 16 5 C 0.60 20.37 7.05 86.77 0.61 20.98 16 6 O -0.55 -23.53 13.23 -3.90 -0.05 -23.58 16 7 C -0.06 -1.79 6.51 42.24 0.27 -1.51 16 8 C 0.02 0.57 12.05 85.46 1.03 1.60 16 9 N -0.30 -6.57 12.01 -56.17 -0.67 -7.24 16 10 N -0.13 -2.40 3.94 -187.50 -0.74 -3.13 16 11 C 0.12 0.88 7.24 86.38 0.63 1.50 16 12 C -0.17 -1.02 10.24 71.98 0.74 -0.29 16 13 N -0.23 -4.95 7.29 -48.17 -0.35 -5.30 16 14 C 0.17 6.08 2.50 45.03 0.11 6.19 16 15 C -0.14 -6.18 5.28 30.68 0.16 -6.02 16 16 C 0.18 9.38 5.26 86.36 0.45 9.83 16 17 N -0.61 -32.96 3.00 -699.11 -2.10 -35.06 16 18 C -0.26 -15.48 9.55 84.03 0.80 -14.68 16 19 H 0.06 3.35 7.83 -2.91 -0.02 3.33 16 20 C -0.04 -2.62 5.32 84.86 0.45 -2.17 16 21 N -0.93 -56.55 10.62 21.65 0.23 -56.32 16 22 Si 0.97 46.86 29.56 68.60 2.03 48.89 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 25 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 26 C 0.15 6.60 6.52 86.36 0.56 7.16 16 27 C -0.13 -5.03 5.27 30.67 0.16 -4.87 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 1.06 6.57 -2.39 -0.02 1.05 16 33 H 0.10 2.08 5.67 -2.39 -0.01 2.06 16 34 H 0.09 1.74 7.81 -2.39 -0.02 1.72 16 35 H 0.21 4.85 8.06 -2.91 -0.02 4.82 16 36 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 40 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.10 3.13 7.72 -2.38 -0.02 3.11 16 42 H 0.05 2.64 6.03 -2.39 -0.01 2.62 16 43 H 0.06 2.25 8.14 -2.38 -0.02 2.24 16 44 H 0.06 3.77 5.91 -2.39 -0.01 3.76 16 45 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 46 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 47 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.05 2.31 7.93 -2.39 -0.02 2.29 16 49 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 50 H 0.05 2.26 6.40 -2.39 -0.02 2.24 16 Total: -1.00 -75.35 390.85 4.62 -70.73 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.92 Total: 13.81 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 7.30 Total: 17.24 kcal Atomic # 7 Polarization: -121.51 SS G_CDS: -5.58 Total: -127.09 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.58 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -75.35 4.62 -70.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661086817.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.511 kcal (2) G-P(sol) polarization free energy of solvation -75.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds