Wall clock time and date at job start Tue Mar 31 2020 19:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47161 * 2 1 4 4 N 1.46495 * 109.47246 * 179.97438 * 3 2 1 5 5 C 1.36944 * 120.00362 * 270.32338 * 4 3 2 6 6 H 1.08000 * 119.99928 * 326.14648 * 5 4 3 7 7 C 1.38808 * 120.00186 * 146.14232 * 5 4 3 8 8 N 1.31623 * 119.99860 * 336.90480 * 7 5 4 9 9 Si 1.86798 * 120.00113 * 156.90193 * 7 5 4 10 10 H 1.48505 * 109.46858 * 90.00066 * 9 7 5 11 11 H 1.48499 * 109.47176 * 210.00373 * 9 7 5 12 12 H 1.48501 * 109.46991 * 330.00406 * 9 7 5 13 13 C 1.46502 * 119.99876 * 90.32446 * 4 3 2 14 14 C 1.52994 * 109.47219 * 90.00110 * 13 4 3 15 15 N 1.46502 * 109.47219 * 179.97438 * 14 13 4 16 16 C 1.34782 * 119.99993 * 179.97438 * 15 14 13 17 17 O 1.21279 * 120.00010 * 0.02562 * 16 15 14 18 18 C 1.50693 * 119.99736 * 180.02562 * 16 15 14 19 19 H 1.08998 * 109.46037 * 299.96778 * 18 16 15 20 20 C 1.53107 * 109.45989 * 59.91772 * 18 16 15 21 21 C 1.53409 * 109.58832 * 190.07947 * 20 18 16 22 22 C 1.50601 * 108.33801 * 310.19992 * 21 20 18 23 23 N 1.32904 * 129.16123 * 196.59732 * 22 21 20 24 24 N 1.29025 * 108.63858 * 179.78152 * 23 22 21 25 25 N 1.29109 * 110.25320 * 0.02562 * 24 23 22 26 26 C 1.46494 * 126.00628 * 180.02562 * 25 24 23 27 27 C 1.34396 * 107.98780 * 0.06094 * 25 24 23 28 28 C 1.50532 * 129.25504 * 179.84749 * 27 25 24 29 29 H 1.09003 * 109.47376 * 60.00272 * 1 2 3 30 30 H 1.09000 * 109.47163 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47409 * 300.00123 * 1 2 3 32 32 H 1.08997 * 109.47409 * 239.99877 * 2 1 3 33 33 H 1.09007 * 109.46961 * 119.99997 * 2 1 3 34 34 H 1.08991 * 109.47105 * 300.00207 * 3 2 1 35 35 H 1.09005 * 109.47021 * 60.00283 * 3 2 1 36 36 H 0.96998 * 119.99703 * 179.97438 * 8 7 5 37 37 H 1.09006 * 109.46823 * 210.00193 * 13 4 3 38 38 H 1.09001 * 109.46956 * 329.99859 * 13 4 3 39 39 H 1.08997 * 109.47220 * 299.99967 * 14 13 4 40 40 H 1.09001 * 109.47362 * 59.99998 * 14 13 4 41 41 H 0.96997 * 119.99895 * 0.02562 * 15 14 13 42 42 H 1.08997 * 109.45014 * 310.11929 * 20 18 16 43 43 H 1.08997 * 109.45302 * 70.05067 * 20 18 16 44 44 H 1.09000 * 109.71083 * 190.47599 * 21 20 18 45 45 H 1.09001 * 109.70430 * 69.91837 * 21 20 18 46 46 H 1.09002 * 109.47483 * 270.00344 * 26 25 24 47 47 H 1.09003 * 109.46988 * 30.00298 * 26 25 24 48 48 H 1.08994 * 109.47500 * 149.99844 * 26 25 24 49 49 H 1.09005 * 109.69325 * 76.73674 * 28 27 25 50 50 H 1.08998 * 109.72581 * 316.17075 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1892 1.4360 1.1868 6 1 3.7862 1.9523 2.0455 7 6 5.4007 0.7658 1.2855 8 7 5.6827 -0.2106 0.4491 9 14 6.6309 1.2494 2.6054 10 1 6.3755 0.4562 3.8346 11 1 8.0085 0.9810 2.1203 12 1 6.4865 2.6956 2.9106 13 6 4.2379 1.4495 -1.2678 14 6 4.4931 2.8944 -1.7014 15 7 5.2267 2.9014 -2.9695 16 6 5.5635 4.0718 -3.5468 17 8 5.2597 5.1192 -3.0162 18 6 6.3175 4.0790 -4.8515 19 1 7.2702 3.5652 -4.7231 20 6 5.4914 3.3608 -5.9220 21 6 6.3502 3.1433 -7.1744 22 6 6.9987 4.4532 -7.5375 23 7 7.5708 4.8182 -8.6802 24 7 7.9946 6.0309 -8.5603 25 7 7.7258 6.4838 -7.3815 26 6 8.0519 7.8200 -6.8773 27 6 7.0949 5.5137 -6.6981 28 6 6.5730 5.5281 -5.2863 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 6.5295 -0.6787 0.5178 37 1 5.1903 0.9349 -1.1399 38 1 3.6491 0.9398 -2.0305 39 1 3.5408 3.4089 -1.8293 40 1 5.0819 3.4041 -0.9387 41 1 5.4693 2.0637 -3.3941 42 1 5.1592 2.3964 -5.5377 43 1 4.6231 3.9677 -6.1783 44 1 5.7209 2.8045 -7.9974 45 1 7.1183 2.3979 -6.9685 46 1 9.0374 7.8022 -6.4118 47 1 8.0535 8.5300 -7.7043 48 1 7.3076 8.1221 -6.1406 49 1 5.6420 6.0935 -5.2446 50 1 7.3101 5.9852 -4.6262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663679619.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:11 Heat of formation + Delta-G solvation = 61.712348 kcal Electronic energy + Delta-G solvation = -29084.457233 eV Core-core repulsion = 25148.805393 eV Total energy + Delta-G solvation = -3935.651840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.60236 -39.83635 -36.91391 -36.36278 -35.12252 -34.35979 -32.85996 -31.08453 -30.79874 -30.48813 -28.22255 -27.99530 -25.59264 -24.88756 -23.59984 -22.89491 -21.63552 -21.39061 -20.55355 -19.92434 -19.47103 -17.63128 -17.14966 -16.78224 -16.36243 -15.66513 -15.29133 -15.02937 -14.73628 -14.32289 -14.13528 -14.12861 -14.03597 -13.74199 -13.60136 -13.53285 -13.13536 -12.99011 -12.74932 -12.55642 -12.31084 -12.18649 -11.97089 -11.72747 -11.39986 -11.29273 -11.21113 -11.04912 -10.91428 -10.78072 -10.73647 -10.52285 -10.31663 -10.17330 -10.00965 -9.97553 -9.72343 -9.54639 -9.03368 -8.63939 -8.53025 -6.72029 -5.87956 -3.41162 1.34727 2.08648 2.35098 2.82679 3.30273 3.38684 3.40242 3.44406 3.94812 4.21614 4.37190 4.43647 4.55110 4.57797 4.60678 4.68163 4.89783 4.96713 5.12680 5.22001 5.22802 5.24197 5.37164 5.44375 5.61691 5.65283 5.72027 5.77023 5.80300 5.81384 5.93747 6.05244 6.06189 6.11127 6.16117 6.25224 6.33716 6.47381 6.49155 6.59384 6.66456 6.80755 6.98191 7.02075 7.21948 7.54201 7.75362 7.84303 8.31144 8.40637 8.48336 9.09115 9.72840 10.28095 11.12509 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.002497 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.833862 B =11212.418847 C =12165.263841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.147 3.853 4 N -0.580 5.580 5 C -0.257 4.257 6 H 0.063 0.937 7 C 0.010 3.990 8 N -0.887 5.887 9 Si 0.895 3.105 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.133 3.867 14 C 0.099 3.901 15 N -0.716 5.716 16 C 0.514 3.486 17 O -0.549 6.549 18 C -0.103 4.103 19 H 0.104 0.896 20 C -0.111 4.111 21 C -0.031 4.031 22 C -0.021 4.021 23 N -0.262 5.262 24 N -0.101 5.101 25 N -0.285 5.285 26 C 0.079 3.921 27 C -0.014 4.014 28 C -0.025 4.025 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.033 0.967 35 H 0.043 0.957 36 H 0.254 0.746 37 H 0.106 0.894 38 H 0.028 0.972 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.398 0.602 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.102 0.898 48 H 0.101 0.899 49 H 0.097 0.903 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.936 9.007 -13.510 16.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.386 4.386 6 H 0.081 0.919 7 C -0.190 4.190 8 N -0.529 5.529 9 Si 0.724 3.276 10 H -0.213 1.213 11 H -0.215 1.215 12 H -0.203 1.203 13 C 0.005 3.995 14 C -0.027 4.027 15 N -0.366 5.366 16 C 0.299 3.701 17 O -0.427 6.427 18 C -0.125 4.125 19 H 0.122 0.878 20 C -0.150 4.150 21 C -0.070 4.070 22 C -0.161 4.161 23 N -0.127 5.127 24 N -0.079 5.079 25 N -0.077 5.077 26 C -0.062 4.062 27 C -0.148 4.148 28 C -0.064 4.064 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.123 0.877 38 H 0.046 0.954 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.232 0.768 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.111 0.889 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.115 0.885 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.509 10.017 -14.485 17.676 hybrid contribution 0.524 -0.217 1.517 1.619 sum 2.033 9.800 -12.969 16.381 Atomic orbital electron populations 1.21759 0.97769 1.00337 1.00708 1.22073 0.93046 1.00757 1.02075 1.20972 0.85036 0.93533 0.98347 1.43709 0.99472 1.84850 1.01986 1.19074 1.02776 1.26514 0.90285 0.91890 1.25057 1.00631 0.95185 0.98154 1.69963 1.23593 1.20048 1.39345 0.86428 0.80886 0.78732 0.81571 1.21264 1.21494 1.20312 1.21105 1.00774 0.90954 0.86644 1.22356 0.94763 1.02678 0.82864 1.46103 1.57494 1.07875 1.25099 1.20273 0.79695 0.84251 0.85861 1.90684 1.55216 1.31672 1.65100 1.21336 1.00817 0.96756 0.93609 0.87774 1.21659 0.98148 1.01548 0.93619 1.19959 0.98389 0.90925 0.97715 1.21710 1.05256 0.98280 0.90891 1.74784 1.12169 1.03794 1.21921 1.78572 1.21711 1.06719 1.00878 1.46819 1.37575 1.13119 1.10138 1.22296 1.03670 0.78576 1.01683 1.21878 1.03942 0.90219 0.98728 1.19917 1.02160 0.97149 0.87186 0.93678 0.93870 0.93395 0.93089 0.91868 0.94823 0.93875 0.93553 0.87714 0.95385 0.93255 0.91685 0.76786 0.89587 0.90635 0.89286 0.89475 0.88924 0.87958 0.88087 0.88494 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 37.16 0.37 -1.82 16 2 C -0.14 -2.61 6.26 -26.73 -0.17 -2.78 16 3 C 0.15 2.93 5.67 -4.04 -0.02 2.91 16 4 N -0.58 -13.42 2.45 -173.24 -0.42 -13.85 16 5 C -0.26 -6.64 9.48 -15.06 -0.14 -6.78 16 6 H 0.06 1.65 7.93 -52.49 -0.42 1.23 16 7 C 0.01 0.25 4.95 -17.43 -0.09 0.16 16 8 N -0.89 -23.75 11.31 55.49 0.63 -23.12 16 9 Si 0.89 20.79 29.61 -169.99 -5.03 15.76 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.13 2.77 5.41 -4.04 -0.02 2.75 16 14 C 0.10 1.86 6.00 -4.04 -0.02 1.84 16 15 N -0.72 -10.57 5.37 -60.30 -0.32 -10.89 16 16 C 0.51 7.36 7.15 -10.99 -0.08 7.28 16 17 O -0.55 -9.91 15.82 5.56 0.09 -9.82 16 18 C -0.10 -1.06 2.50 -91.49 -0.23 -1.28 16 19 H 0.10 0.97 8.12 -51.93 -0.42 0.54 16 20 C -0.11 -0.96 5.17 -26.46 -0.14 -1.10 16 21 C -0.03 -0.27 6.30 -27.72 -0.17 -0.45 16 22 C -0.02 -0.25 7.11 -83.12 -0.59 -0.84 16 23 N -0.26 -3.70 12.40 33.16 0.41 -3.29 16 24 N -0.10 -1.34 13.19 60.35 0.80 -0.55 16 25 N -0.28 -2.98 3.73 -64.01 -0.24 -3.22 16 26 C 0.08 0.43 11.27 59.84 0.67 1.11 16 27 C -0.01 -0.15 6.76 -82.50 -0.56 -0.70 16 28 C -0.02 -0.24 4.68 -27.74 -0.13 -0.37 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 35 H 0.04 0.86 8.04 -51.93 -0.42 0.44 16 36 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 37 H 0.11 2.48 5.31 -51.93 -0.28 2.20 16 38 H 0.03 0.54 8.07 -51.93 -0.42 0.13 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.40 4.89 7.80 -40.82 -0.32 4.57 16 42 H 0.09 0.64 7.30 -51.93 -0.38 0.27 16 43 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.10 0.40 7.96 -51.93 -0.41 -0.02 16 49 H 0.10 1.01 7.78 -51.93 -0.40 0.61 16 50 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 404.35 15.07 6.09 6.09 Total: -1.00 -32.57 404.35 -7.84 -40.41 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -8.51 Total: 2.55 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -1.32 Total: -0.08 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.85 Total: -54.92 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.57 -7.84 -40.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663679619.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.124 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds