Wall clock time and date at job start Tue Mar 31 2020 19:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47161 * 2 1 4 4 N 1.46495 * 109.47246 * 179.97438 * 3 2 1 5 5 C 1.36944 * 120.00362 * 270.32338 * 4 3 2 6 6 H 1.08000 * 119.99928 * 326.14648 * 5 4 3 7 7 C 1.38808 * 120.00186 * 146.14232 * 5 4 3 8 8 N 1.31623 * 119.99860 * 336.90480 * 7 5 4 9 9 Si 1.86798 * 120.00113 * 156.90193 * 7 5 4 10 10 H 1.48505 * 109.46858 * 90.00066 * 9 7 5 11 11 H 1.48499 * 109.47176 * 210.00373 * 9 7 5 12 12 H 1.48501 * 109.46991 * 330.00406 * 9 7 5 13 13 C 1.46502 * 119.99876 * 90.32446 * 4 3 2 14 14 C 1.52994 * 109.47219 * 90.00110 * 13 4 3 15 15 N 1.46502 * 109.47219 * 179.97438 * 14 13 4 16 16 C 1.34782 * 119.99993 * 179.97438 * 15 14 13 17 17 O 1.21279 * 120.00010 * 0.02562 * 16 15 14 18 18 C 1.50693 * 119.99736 * 180.02562 * 16 15 14 19 19 H 1.08998 * 109.46037 * 299.96778 * 18 16 15 20 20 C 1.53107 * 109.45989 * 59.91772 * 18 16 15 21 21 C 1.53409 * 109.58832 * 190.07947 * 20 18 16 22 22 C 1.50601 * 108.33801 * 310.19992 * 21 20 18 23 23 N 1.32904 * 129.16123 * 196.59732 * 22 21 20 24 24 N 1.29025 * 108.63858 * 179.78152 * 23 22 21 25 25 N 1.29109 * 110.25320 * 0.02562 * 24 23 22 26 26 C 1.46494 * 126.00628 * 180.02562 * 25 24 23 27 27 C 1.34396 * 107.98780 * 0.06094 * 25 24 23 28 28 C 1.50532 * 129.25504 * 179.84749 * 27 25 24 29 29 H 1.09003 * 109.47376 * 60.00272 * 1 2 3 30 30 H 1.09000 * 109.47163 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47409 * 300.00123 * 1 2 3 32 32 H 1.08997 * 109.47409 * 239.99877 * 2 1 3 33 33 H 1.09007 * 109.46961 * 119.99997 * 2 1 3 34 34 H 1.08991 * 109.47105 * 300.00207 * 3 2 1 35 35 H 1.09005 * 109.47021 * 60.00283 * 3 2 1 36 36 H 0.96998 * 119.99703 * 179.97438 * 8 7 5 37 37 H 1.09006 * 109.46823 * 210.00193 * 13 4 3 38 38 H 1.09001 * 109.46956 * 329.99859 * 13 4 3 39 39 H 1.08997 * 109.47220 * 299.99967 * 14 13 4 40 40 H 1.09001 * 109.47362 * 59.99998 * 14 13 4 41 41 H 0.96997 * 119.99895 * 0.02562 * 15 14 13 42 42 H 1.08997 * 109.45014 * 310.11929 * 20 18 16 43 43 H 1.08997 * 109.45302 * 70.05067 * 20 18 16 44 44 H 1.09000 * 109.71083 * 190.47599 * 21 20 18 45 45 H 1.09001 * 109.70430 * 69.91837 * 21 20 18 46 46 H 1.09002 * 109.47483 * 270.00344 * 26 25 24 47 47 H 1.09003 * 109.46988 * 30.00298 * 26 25 24 48 48 H 1.08994 * 109.47500 * 149.99844 * 26 25 24 49 49 H 1.09005 * 109.69325 * 76.73674 * 28 27 25 50 50 H 1.08998 * 109.72581 * 316.17075 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1892 1.4360 1.1868 6 1 3.7862 1.9523 2.0455 7 6 5.4007 0.7658 1.2855 8 7 5.6827 -0.2106 0.4491 9 14 6.6309 1.2494 2.6054 10 1 6.3755 0.4562 3.8346 11 1 8.0085 0.9810 2.1203 12 1 6.4865 2.6956 2.9106 13 6 4.2379 1.4495 -1.2678 14 6 4.4931 2.8944 -1.7014 15 7 5.2267 2.9014 -2.9695 16 6 5.5635 4.0718 -3.5468 17 8 5.2597 5.1192 -3.0162 18 6 6.3175 4.0790 -4.8515 19 1 7.2702 3.5652 -4.7231 20 6 5.4914 3.3608 -5.9220 21 6 6.3502 3.1433 -7.1744 22 6 6.9987 4.4532 -7.5375 23 7 7.5708 4.8182 -8.6802 24 7 7.9946 6.0309 -8.5603 25 7 7.7258 6.4838 -7.3815 26 6 8.0519 7.8200 -6.8773 27 6 7.0949 5.5137 -6.6981 28 6 6.5730 5.5281 -5.2863 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 6.5295 -0.6787 0.5178 37 1 5.1903 0.9349 -1.1399 38 1 3.6491 0.9398 -2.0305 39 1 3.5408 3.4089 -1.8293 40 1 5.0819 3.4041 -0.9387 41 1 5.4693 2.0637 -3.3941 42 1 5.1592 2.3964 -5.5377 43 1 4.6231 3.9677 -6.1783 44 1 5.7209 2.8045 -7.9974 45 1 7.1183 2.3979 -6.9685 46 1 9.0374 7.8022 -6.4118 47 1 8.0535 8.5300 -7.7043 48 1 7.3076 8.1221 -6.1406 49 1 5.6420 6.0935 -5.2446 50 1 7.3101 5.9852 -4.6262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663679619.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:10 Heat of formation + Delta-G solvation = 41.149661 kcal Electronic energy + Delta-G solvation = -29085.348898 eV Core-core repulsion = 25148.805393 eV Total energy + Delta-G solvation = -3936.543505 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.44288 -40.99494 -38.29019 -37.57738 -35.92614 -35.71715 -34.52486 -32.67330 -31.61220 -31.51791 -29.59856 -28.72111 -27.30134 -25.98362 -24.65882 -24.12207 -22.94358 -22.40119 -21.65009 -21.47573 -20.48488 -18.82695 -18.25115 -17.90768 -17.43362 -16.98278 -16.83095 -16.38685 -15.88110 -15.80995 -15.53502 -15.02285 -14.89386 -14.84810 -14.71623 -14.50603 -14.14043 -14.11453 -13.98438 -13.68716 -13.60813 -13.14277 -13.03951 -13.00321 -12.71957 -12.61386 -12.52702 -12.46643 -12.17765 -12.13251 -12.00235 -11.94491 -11.77147 -11.67178 -11.56107 -11.29557 -10.95697 -10.78036 -10.52416 -9.97466 -9.87337 -8.60223 -7.83119 -5.39046 0.51837 1.42140 1.44856 1.46469 1.49421 1.57605 1.67456 2.21958 2.53743 3.15384 3.25177 3.41521 3.70453 3.74294 3.77587 3.83878 3.95413 4.13111 4.23841 4.28284 4.30555 4.42928 4.43842 4.44443 4.50391 4.55840 4.61537 4.67489 4.71685 4.84208 4.86857 4.89939 4.90262 5.00318 5.03812 5.08875 5.20310 5.21183 5.28446 5.32177 5.32956 5.48229 5.49956 5.60168 5.64815 5.71053 5.86580 6.46742 6.66403 7.17257 7.31881 7.43447 7.87472 8.36751 9.13405 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.002497 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.833862 B =11212.418847 C =12165.263841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.144 3.856 4 N -0.598 5.598 5 C -0.265 4.265 6 H 0.053 0.947 7 C -0.030 4.030 8 N -0.907 5.907 9 Si 0.946 3.054 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.140 3.860 14 C 0.121 3.879 15 N -0.709 5.709 16 C 0.517 3.483 17 O -0.586 6.586 18 C -0.092 4.092 19 H 0.121 0.879 20 C -0.104 4.104 21 C -0.027 4.027 22 C -0.032 4.032 23 N -0.298 5.298 24 N -0.128 5.128 25 N -0.278 5.278 26 C 0.066 3.934 27 C -0.014 4.014 28 C -0.018 4.018 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.030 0.970 34 H 0.054 0.946 35 H 0.039 0.961 36 H 0.252 0.748 37 H 0.081 0.919 38 H 0.043 0.957 39 H 0.046 0.954 40 H 0.030 0.970 41 H 0.413 0.587 42 H 0.102 0.898 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.100 0.900 46 H 0.109 0.891 47 H 0.115 0.885 48 H 0.118 0.882 49 H 0.093 0.907 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.516 9.274 -14.145 16.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C 0.019 3.981 4 N -0.318 5.318 5 C -0.396 4.396 6 H 0.071 0.929 7 C -0.228 4.228 8 N -0.551 5.551 9 Si 0.775 3.225 10 H -0.212 1.212 11 H -0.215 1.215 12 H -0.205 1.205 13 C 0.013 3.987 14 C -0.006 4.006 15 N -0.361 5.361 16 C 0.304 3.696 17 O -0.467 6.467 18 C -0.114 4.114 19 H 0.139 0.861 20 C -0.143 4.143 21 C -0.066 4.066 22 C -0.173 4.173 23 N -0.161 5.161 24 N -0.105 5.105 25 N -0.070 5.070 26 C -0.074 4.074 27 C -0.150 4.150 28 C -0.057 4.057 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.249 0.751 42 H 0.120 0.880 43 H 0.091 0.909 44 H 0.116 0.884 45 H 0.118 0.882 46 H 0.128 0.872 47 H 0.134 0.866 48 H 0.136 0.864 49 H 0.111 0.889 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.094 10.288 -15.157 18.351 hybrid contribution 0.617 -0.229 1.730 1.851 sum 1.711 10.059 -13.427 16.864 Atomic orbital electron populations 1.21669 0.94371 1.01648 1.01940 1.21912 0.95965 0.99179 0.99948 1.21093 0.83405 0.94497 0.99140 1.43945 1.00874 1.85091 1.01908 1.19204 1.03334 1.25956 0.91091 0.92937 1.25573 1.01817 0.95413 0.99983 1.70057 1.23696 1.20768 1.40596 0.85626 0.79100 0.78109 0.79694 1.21238 1.21492 1.20472 1.20976 0.99602 0.91852 0.86285 1.21789 0.94358 1.00638 0.83799 1.45931 1.57229 1.09097 1.23820 1.20904 0.78881 0.83155 0.86634 1.90673 1.56658 1.32963 1.66386 1.21295 1.01060 0.97538 0.91518 0.86118 1.21640 0.97634 1.02070 0.92921 1.20041 0.98707 0.89954 0.97868 1.22238 1.04997 0.99615 0.90431 1.74736 1.13538 1.04501 1.23342 1.78492 1.22878 1.06920 1.02231 1.47194 1.36251 1.14269 1.09323 1.22734 1.05164 0.76753 1.02702 1.21980 1.03917 0.90243 0.98819 1.19859 1.02132 0.96933 0.86793 0.91873 0.92567 0.92718 0.94033 0.95133 0.92768 0.94212 0.93822 0.90134 0.93840 0.93587 0.95135 0.75064 0.87952 0.90928 0.88413 0.88159 0.87220 0.86634 0.86367 0.88907 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.91 71.98 0.71 -3.05 16 2 C -0.13 -4.76 6.26 30.59 0.19 -4.57 16 3 C 0.14 5.63 5.67 86.38 0.49 6.12 16 4 N -0.60 -27.70 2.45 -702.01 -1.72 -29.42 16 5 C -0.27 -13.89 9.48 84.03 0.80 -13.09 16 6 H 0.05 2.80 7.93 -2.91 -0.02 2.78 16 7 C -0.03 -1.58 4.95 84.86 0.42 -1.16 16 8 N -0.91 -48.99 11.31 21.65 0.24 -48.75 16 9 Si 0.95 43.10 29.61 68.60 2.03 45.13 16 10 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 C 0.14 5.80 5.41 86.38 0.47 6.27 16 14 C 0.12 4.51 6.00 86.38 0.52 5.03 16 15 N -0.71 -20.00 5.37 -463.07 -2.49 -22.49 16 16 C 0.52 14.04 7.15 87.65 0.63 14.67 16 17 O -0.59 -20.73 15.82 -3.03 -0.05 -20.78 16 18 C -0.09 -1.69 2.50 -11.36 -0.03 -1.72 16 19 H 0.12 1.89 8.12 -2.39 -0.02 1.87 16 20 C -0.10 -1.54 5.17 30.77 0.16 -1.38 16 21 C -0.03 -0.42 6.30 29.95 0.19 -0.23 16 22 C -0.03 -0.70 7.11 41.75 0.30 -0.41 16 23 N -0.30 -8.25 12.40 -48.99 -0.61 -8.86 16 24 N -0.13 -3.33 13.19 37.02 0.49 -2.84 16 25 N -0.28 -5.46 3.73 -356.43 -1.33 -6.79 16 26 C 0.07 0.60 11.27 127.77 1.44 2.04 16 27 C -0.01 -0.29 6.76 41.50 0.28 -0.01 16 28 C -0.02 -0.32 4.68 29.94 0.14 -0.18 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.05 1.88 8.07 -2.39 -0.02 1.86 16 35 H 0.04 1.56 8.04 -2.38 -0.02 1.54 16 36 H 0.25 13.23 8.31 -92.71 -0.77 12.46 16 37 H 0.08 3.83 5.31 -2.38 -0.01 3.82 16 38 H 0.04 1.64 8.07 -2.39 -0.02 1.62 16 39 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.41 9.30 7.80 -92.71 -0.72 8.58 16 42 H 0.10 1.21 7.30 -2.39 -0.02 1.19 16 43 H 0.07 1.15 8.12 -2.39 -0.02 1.13 16 44 H 0.10 1.37 8.14 -2.39 -0.02 1.36 16 45 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.12 0.68 7.96 -2.39 -0.02 0.66 16 49 H 0.09 1.80 7.78 -2.38 -0.02 1.78 16 50 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -71.44 404.35 3.48 -67.97 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.21 Total: 18.51 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 6.70 Total: 8.32 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -5.41 Total: -119.15 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.05 Total: -20.78 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -71.44 3.48 -67.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663679619.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.116 kcal (2) G-P(sol) polarization free energy of solvation -71.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds