Wall clock time and date at job start Tue Mar 31 2020 19:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 N 1.46499 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.34775 * 120.00337 * 89.99693 * 4 3 2 6 6 O 1.21282 * 120.00258 * 179.97438 * 5 4 3 7 7 C 1.50707 * 119.99977 * 0.02562 * 5 4 3 8 8 C 1.53001 * 109.46986 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.46723 * 180.02562 * 8 7 5 10 10 C 1.39670 * 127.05350 * 124.71160 * 9 8 7 11 11 N 1.31375 * 105.90392 * 179.83735 * 10 9 8 12 12 N 1.28604 * 108.71903 * 0.42504 * 11 10 9 13 13 C 1.46492 * 124.62418 * 179.72050 * 12 11 10 14 14 N 1.28603 * 110.75653 * 359.72221 * 12 11 10 15 15 C 1.46497 * 119.99929 * 269.99768 * 4 3 2 16 16 H 1.09002 * 110.64361 * 359.29773 * 15 4 3 17 17 C 1.55154 * 110.72494 * 122.44261 * 15 4 3 18 18 C 1.55119 * 101.49032 * 153.73360 * 17 15 4 19 19 N 1.47425 * 104.94262 * 323.22283 * 18 17 15 20 20 C 1.36937 * 125.64976 * 204.03738 * 19 18 17 21 21 H 1.07996 * 120.00414 * 179.97438 * 20 19 18 22 22 C 1.38812 * 119.99686 * 359.95844 * 20 19 18 23 23 N 1.31614 * 120.00296 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99706 * 179.97438 * 22 20 19 25 25 H 1.48510 * 109.47185 * 90.00152 * 24 22 20 26 26 H 1.48503 * 109.47472 * 210.00141 * 24 22 20 27 27 H 1.48494 * 109.47535 * 330.00216 * 24 22 20 28 28 C 1.47025 * 108.70178 * 24.00433 * 19 18 17 29 29 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 31 31 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 33 33 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 34 34 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 35 35 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 36 36 H 1.08999 * 109.46394 * 300.00002 * 7 5 4 37 37 H 1.08997 * 109.47055 * 59.99479 * 7 5 4 38 38 H 1.09002 * 109.47043 * 299.99300 * 8 7 5 39 39 H 1.08992 * 109.46986 * 60.00032 * 8 7 5 40 40 H 1.08007 * 127.04901 * 359.97438 * 10 9 8 41 41 H 1.09008 * 109.47054 * 270.00099 * 13 12 11 42 42 H 1.09003 * 109.47290 * 30.00003 * 13 12 11 43 43 H 1.09004 * 109.47421 * 150.00020 * 13 12 11 44 44 H 1.08998 * 111.00613 * 271.94357 * 17 15 4 45 45 H 1.09000 * 111.00283 * 35.78810 * 17 15 4 46 46 H 1.08997 * 110.41832 * 204.29390 * 18 17 15 47 47 H 1.09005 * 110.20673 * 82.04529 * 18 17 15 48 48 H 0.97007 * 120.00196 * 179.97438 * 23 22 20 49 49 H 1.09006 * 109.87788 * 239.52246 * 28 19 18 50 50 H 1.09001 * 110.00915 * 118.43148 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1784 1.4425 -1.1680 6 8 5.3912 1.4430 -1.1685 7 6 3.4244 1.4433 -2.4729 8 6 4.4182 1.4426 -3.6362 9 6 3.6642 1.4439 -4.9410 10 6 3.7937 2.3605 -5.9869 11 7 2.9491 1.9701 -6.9143 12 7 2.3367 0.9185 -6.4986 13 6 1.3123 0.1970 -7.2577 14 7 2.7461 0.5864 -5.3256 15 6 4.2380 1.4423 1.2678 16 1 3.5471 1.4547 2.1108 17 6 5.1866 0.2176 1.3535 18 6 6.2810 0.7415 2.3200 19 7 6.4452 2.1648 1.9726 20 6 7.5654 2.9182 2.2019 21 1 7.5868 3.9574 1.9084 22 6 8.6735 2.3464 2.8118 23 7 8.6473 1.0803 3.1702 24 14 10.2019 3.3740 3.1240 25 1 10.1049 4.0119 4.4616 26 1 11.4029 2.5018 3.0775 27 1 10.3131 4.4253 2.0812 28 6 5.2072 2.6411 1.3385 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3635 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 2.7974 0.5535 -2.5306 37 1 2.7980 2.3335 -2.5301 38 1 5.0456 2.3321 -3.5786 39 1 5.0441 0.5521 -3.5787 40 1 4.4546 3.2139 -6.0262 41 1 0.3302 0.6086 -7.0247 42 1 1.5075 0.3046 -8.3247 43 1 1.3369 -0.8590 -6.9886 44 1 4.6720 -0.6467 1.7733 45 1 5.6097 -0.0180 0.3770 46 1 7.2156 0.2027 2.1641 47 1 5.9509 0.6389 3.3537 48 1 9.4218 0.6806 3.5961 49 1 5.4216 3.0043 0.3333 50 1 4.7661 3.4398 1.9349 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664678755.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:22 Heat of formation + Delta-G solvation = 78.651869 kcal Electronic energy + Delta-G solvation = -29701.206053 eV Core-core repulsion = 25766.288765 eV Total energy + Delta-G solvation = -3934.917287 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.50083 -41.36271 -38.55844 -37.05164 -35.85115 -34.57478 -33.83345 -33.21914 -32.55320 -30.98184 -29.29310 -28.39108 -26.92401 -26.60295 -25.29904 -23.29694 -22.82055 -22.32914 -21.95701 -21.35567 -19.62201 -18.91820 -18.27497 -17.95131 -17.68091 -17.16888 -16.66962 -16.52948 -15.95536 -15.63220 -15.56094 -15.30456 -14.90268 -14.80027 -14.37741 -14.18046 -13.94668 -13.86348 -13.71333 -13.52754 -13.36331 -13.12905 -12.97009 -12.91460 -12.77957 -12.70049 -12.51312 -12.37940 -12.15851 -12.01468 -11.98502 -11.92991 -11.80494 -11.77153 -11.55834 -11.30086 -11.21731 -10.71619 -10.42853 -10.03096 -9.51401 -8.82650 -7.74173 -5.17445 0.81822 1.41505 1.44706 1.48255 1.54067 1.56815 1.78130 2.05743 2.52434 3.13972 3.34533 3.54254 3.77682 3.82872 3.94847 3.99529 4.08977 4.14478 4.23174 4.25670 4.30592 4.33954 4.38926 4.45639 4.48970 4.59543 4.63330 4.64819 4.72345 4.77805 4.80911 4.86510 5.02169 5.03806 5.04454 5.06201 5.12284 5.17773 5.28839 5.32054 5.32999 5.45492 5.52485 5.66724 5.80007 5.81275 5.85118 6.33442 6.57286 7.13512 7.34578 7.38112 7.81849 8.46086 9.27840 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012807 B = 0.002870 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.733249 B = 9752.286954 C =11420.787546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.140 4.140 3 C 0.105 3.895 4 N -0.602 5.602 5 C 0.501 3.499 6 O -0.563 6.563 7 C -0.115 4.115 8 C -0.009 4.009 9 C -0.001 4.001 10 C -0.028 4.028 11 N -0.308 5.308 12 N -0.161 5.161 13 C 0.095 3.905 14 N -0.299 5.299 15 C 0.153 3.847 16 H 0.113 0.887 17 C -0.137 4.137 18 C 0.162 3.838 19 N -0.618 5.618 20 C -0.234 4.234 21 H 0.075 0.925 22 C -0.071 4.071 23 N -0.951 5.951 24 Si 0.982 3.018 25 H -0.282 1.282 26 H -0.293 1.293 27 H -0.273 1.273 28 C 0.130 3.870 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.218 0.782 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.065 0.935 47 H -0.007 1.007 48 H 0.246 0.754 49 H 0.023 0.977 50 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.381 -2.128 -17.796 29.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C -0.017 4.017 4 N -0.334 5.334 5 C 0.291 3.709 6 O -0.441 6.441 7 C -0.155 4.155 8 C -0.049 4.049 9 C -0.163 4.163 10 C -0.209 4.209 11 N -0.150 5.150 12 N -0.063 5.063 13 C -0.043 4.043 14 N -0.143 5.143 15 C 0.049 3.951 16 H 0.130 0.870 17 C -0.177 4.177 18 C 0.036 3.964 19 N -0.344 5.344 20 C -0.363 4.363 21 H 0.093 0.907 22 C -0.263 4.263 23 N -0.601 5.601 24 Si 0.810 3.190 25 H -0.209 1.209 26 H -0.219 1.219 27 H -0.198 1.198 28 C 0.004 3.996 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.235 0.765 41 H 0.125 0.875 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.011 0.989 48 H 0.056 0.944 49 H 0.041 0.959 50 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -23.573 -2.817 -18.488 30.090 hybrid contribution 1.896 0.770 0.930 2.248 sum -21.676 -2.047 -17.559 27.971 Atomic orbital electron populations 1.21656 0.93513 1.02329 1.02627 1.21928 0.97279 0.96439 1.02179 1.21969 0.76909 0.97882 1.04899 1.48045 1.07724 1.73089 1.04574 1.21236 0.87828 0.75483 0.86369 1.90819 1.15952 1.49539 1.87796 1.21584 0.98654 1.05887 0.89360 1.19510 0.95284 1.04310 0.85806 1.23157 0.98796 0.94698 0.99647 1.25096 1.01592 1.03603 0.90628 1.74026 1.10032 1.03473 1.27474 1.48422 1.29463 1.18261 1.10152 1.22539 0.87573 0.97552 0.96586 1.73953 1.14589 1.25462 1.00263 1.21865 0.92814 0.94297 0.86143 0.86956 1.23177 0.97085 0.97241 1.00166 1.21614 0.97153 0.84841 0.92759 1.44569 1.11692 1.08406 1.69690 1.19408 0.91518 0.93484 1.31868 0.90738 1.25645 1.01294 0.97715 1.01624 1.70073 1.29933 1.12393 1.47682 0.85025 0.78587 0.77399 0.78005 1.20897 1.21895 1.19758 1.21624 0.87060 0.95398 0.95546 0.91961 0.91656 0.92337 0.92254 0.92566 0.88303 0.89001 0.87403 0.87035 0.89017 0.91036 0.76543 0.87499 0.86549 0.86703 0.90201 0.92347 0.91709 0.98892 0.94428 0.95861 0.96162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.91 71.98 0.71 -0.89 16 2 C -0.14 -2.21 6.26 30.59 0.19 -2.02 16 3 C 0.11 1.81 5.20 86.38 0.45 2.26 16 4 N -0.60 -16.67 2.54 -791.26 -2.01 -18.68 16 5 C 0.50 15.46 6.77 87.66 0.59 16.05 16 6 O -0.56 -23.84 12.34 -3.04 -0.04 -23.88 16 7 C -0.11 -2.45 4.23 29.85 0.13 -2.32 16 8 C -0.01 -0.21 5.10 29.85 0.15 -0.06 16 9 C 0.00 -0.03 6.61 42.97 0.28 0.26 16 10 C -0.03 -0.56 12.15 85.11 1.03 0.47 16 11 N -0.31 -6.45 12.05 -56.87 -0.69 -7.13 16 12 N -0.16 -2.98 4.35 -206.55 -0.90 -3.87 16 13 C 0.10 0.72 11.57 127.77 1.48 2.20 16 14 N -0.30 -6.49 12.04 -47.25 -0.57 -7.06 16 15 C 0.15 5.44 3.43 46.18 0.16 5.60 16 16 H 0.11 3.42 7.86 -2.39 -0.02 3.40 16 17 C -0.14 -5.74 6.44 32.06 0.21 -5.54 16 18 C 0.16 8.69 5.89 86.93 0.51 9.20 16 19 N -0.62 -34.84 3.40 -691.55 -2.35 -37.19 16 20 C -0.23 -14.22 10.27 84.03 0.86 -13.35 16 21 H 0.07 4.39 7.83 -2.91 -0.02 4.37 16 22 C -0.07 -4.29 5.49 84.86 0.47 -3.83 16 23 N -0.95 -60.16 10.09 21.65 0.22 -59.95 16 24 Si 0.98 48.55 29.55 68.60 2.03 50.57 16 25 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 26 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 27 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 28 C 0.13 5.94 6.48 86.73 0.56 6.50 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 1.01 7.22 -2.39 -0.02 1.00 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.10 1.29 6.44 -2.39 -0.02 1.27 16 35 H 0.09 1.39 7.95 -2.39 -0.02 1.37 16 36 H 0.11 2.05 7.19 -2.39 -0.02 2.03 16 37 H 0.11 1.89 7.40 -2.39 -0.02 1.87 16 38 H 0.09 2.18 8.09 -2.39 -0.02 2.16 16 39 H 0.07 1.93 8.10 -2.39 -0.02 1.91 16 40 H 0.22 3.10 8.06 -2.91 -0.02 3.08 16 41 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 42 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 45 H 0.06 2.72 6.04 -2.39 -0.01 2.70 16 46 H 0.06 4.02 5.87 -2.39 -0.01 4.00 16 47 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 48 H 0.25 15.02 8.31 -92.70 -0.77 14.25 16 49 H 0.02 1.15 6.07 -2.38 -0.01 1.13 16 50 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -83.66 397.33 4.41 -79.25 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.92 Total: 13.41 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 7.79 Total: 14.53 kcal Atomic # 7 Polarization: -127.59 SS G_CDS: -6.29 Total: -133.88 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.04 Total: -23.88 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.57 kcal Total: -83.66 4.41 -79.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664678755.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.899 kcal (2) G-P(sol) polarization free energy of solvation -83.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds