Wall clock time and date at job start Tue Mar 31 2020 18:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47110 * 2 1 4 4 H 1.09002 * 109.47002 * 305.00029 * 3 2 1 5 5 C 1.53007 * 109.47045 * 64.99730 * 3 2 1 6 6 N 1.46502 * 109.47578 * 184.99627 * 3 2 1 7 7 N 1.40065 * 125.97534 * 300.03212 * 6 3 2 8 8 C 1.31208 * 108.17419 * 179.97438 * 7 6 3 9 9 N 1.40197 * 125.98000 * 180.02562 * 8 7 6 10 10 C 1.34775 * 120.00218 * 179.97438 * 9 8 7 11 11 O 1.21587 * 120.00241 * 354.96646 * 10 9 8 12 12 N 1.34776 * 119.99532 * 174.97099 * 10 9 8 13 13 C 1.46955 * 120.59957 * 4.80886 * 12 10 9 14 14 C 1.53812 * 108.40089 * 124.75897 * 13 12 10 15 15 N 1.46968 * 108.57641 * 49.64052 * 14 13 12 16 16 C 1.36938 * 120.59613 * 124.62842 * 15 14 13 17 17 H 1.07996 * 119.99729 * 206.45264 * 16 15 14 18 18 C 1.38808 * 119.99987 * 26.44797 * 16 15 14 19 19 N 1.31619 * 120.00489 * 216.99884 * 18 16 15 20 20 Si 1.86805 * 119.99865 * 36.99889 * 18 16 15 21 21 H 1.48496 * 109.47225 * 95.25353 * 20 18 16 22 22 H 1.48507 * 109.46813 * 215.25119 * 20 18 16 23 23 H 1.48499 * 109.46981 * 335.24999 * 20 18 16 24 24 C 1.46965 * 118.81070 * 304.64896 * 15 14 13 25 25 C 1.46968 * 120.59051 * 185.09286 * 12 10 9 26 26 C 1.40413 * 108.05326 * 359.97438 * 8 7 6 27 27 C 1.34960 * 125.97446 * 119.70652 * 6 3 2 28 28 C 1.50704 * 126.07417 * 0.02562 * 27 6 3 29 29 H 1.09000 * 109.46969 * 60.00163 * 1 2 3 30 30 H 1.08997 * 109.46809 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47014 * 300.00368 * 1 2 3 32 32 H 1.09001 * 109.47482 * 239.99886 * 2 1 3 33 33 H 1.09000 * 109.47431 * 119.99573 * 2 1 3 34 34 H 1.08992 * 109.47142 * 60.00328 * 5 3 2 35 35 H 1.09002 * 109.46673 * 179.97438 * 5 3 2 36 36 H 1.08999 * 109.47068 * 300.00169 * 5 3 2 37 37 H 0.97001 * 119.99528 * 359.97355 * 9 8 7 38 38 H 1.08998 * 109.61399 * 244.54229 * 13 12 10 39 39 H 1.08999 * 109.61065 * 5.05951 * 13 12 10 40 40 H 1.09000 * 109.74359 * 289.85825 * 14 13 12 41 41 H 1.09003 * 109.53807 * 169.30149 * 14 13 12 42 42 H 0.96998 * 120.00348 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.61104 * 295.48178 * 24 15 14 44 44 H 1.09001 * 109.74950 * 175.05625 * 24 15 14 45 45 H 1.09004 * 109.60977 * 354.94809 * 25 12 10 46 46 H 1.09005 * 109.60917 * 115.28428 * 25 12 10 47 47 H 1.07993 * 126.06865 * 180.02562 * 26 8 7 48 48 H 1.08997 * 109.47061 * 89.99067 * 28 27 6 49 49 H 1.08994 * 109.47117 * 209.99543 * 28 27 6 50 50 H 1.09000 * 109.47017 * 329.99310 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3074 6 7 3.5001 1.4444 -0.1203 7 7 4.4000 0.8499 0.7733 8 6 5.6168 1.0617 0.3303 9 7 6.8024 0.6273 0.9395 10 6 7.9932 0.9135 0.3769 11 8 8.0372 1.4679 -0.7044 12 7 9.1352 0.5851 1.0128 13 6 9.0995 -0.1779 2.2683 14 6 9.9700 -1.4344 2.0977 15 7 11.2732 -1.0305 1.5513 16 6 12.4335 -1.3634 2.1978 17 1 13.3150 -0.7518 2.0743 18 6 12.4767 -2.4868 3.0120 19 7 13.1817 -2.4676 4.1232 20 14 11.5340 -4.0260 2.5305 21 1 12.4400 -4.9562 1.8101 22 1 11.0128 -4.6897 3.7525 23 1 10.3999 -3.6555 1.6463 24 6 11.3087 -0.2626 0.2987 25 6 10.4384 0.9890 0.4664 26 6 5.5239 1.7986 -0.8613 27 6 4.2129 2.0139 -1.1147 28 6 3.6486 2.7601 -2.2962 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.0698 1.5876 2.1492 35 1 1.9989 3.1541 1.3075 36 1 0.5489 2.1252 1.3969 37 1 6.7656 0.1208 1.7659 38 1 9.4917 0.4347 3.0800 39 1 8.0729 -0.4697 2.4899 40 1 9.4847 -2.1282 1.4112 41 1 10.1122 -1.9136 3.0664 42 1 13.2116 -3.2525 4.6924 43 1 10.9186 -0.8729 -0.5158 44 1 12.3343 0.0321 0.0763 45 1 10.2962 1.4683 -0.5023 46 1 10.9224 1.6852 1.1514 47 1 6.3520 2.1309 -1.4696 48 1 3.5555 3.8173 -2.0475 49 1 4.3153 2.6451 -3.1507 50 1 2.6666 2.3576 -2.5448 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675747097.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:45 Heat of formation + Delta-G solvation = 74.393530 kcal Electronic energy + Delta-G solvation = -29538.879087 eV Core-core repulsion = 25603.777144 eV Total energy + Delta-G solvation = -3935.101943 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.53644 -41.35310 -38.84920 -37.43812 -35.92984 -35.57032 -33.59173 -33.01014 -32.16216 -31.66969 -29.56691 -28.73666 -27.93320 -25.79217 -25.21416 -24.85531 -23.47876 -22.20516 -21.75467 -20.73670 -20.51948 -19.33465 -18.17731 -17.97196 -17.31334 -17.01199 -16.77021 -16.22728 -16.16197 -15.99885 -15.74498 -15.38955 -15.30516 -14.87169 -14.82640 -14.59304 -14.31282 -14.13414 -13.93919 -13.74684 -13.56194 -13.47445 -13.34347 -13.05051 -12.77587 -12.69540 -12.54889 -12.49684 -12.32771 -12.16522 -12.10266 -11.89230 -11.83952 -11.51967 -11.47332 -11.42940 -11.07887 -10.67842 -9.97873 -9.64171 -9.18839 -8.85910 -8.23433 -5.39001 0.81788 0.99840 1.34914 1.47127 1.52999 1.56223 1.79660 2.29576 2.44255 2.67016 2.92717 3.36325 3.49796 3.72827 3.84881 4.02284 4.05423 4.07459 4.11737 4.23266 4.31340 4.38002 4.42041 4.50682 4.54301 4.57133 4.62232 4.73672 4.73952 4.75819 4.78016 4.85777 4.94114 4.98336 4.99062 5.06297 5.09750 5.11476 5.13005 5.19764 5.29539 5.41289 5.48675 5.73420 5.84198 5.85835 6.12131 6.21829 6.51470 6.88906 6.93268 7.32974 7.61911 8.04937 8.94345 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.002561 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.452874 B =10931.126105 C =11863.006297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.155 3.845 4 H 0.132 0.868 5 C -0.157 4.157 6 N -0.357 5.357 7 N -0.345 5.345 8 C 0.301 3.699 9 N -0.645 5.645 10 C 0.716 3.284 11 O -0.597 6.597 12 N -0.611 5.611 13 C 0.100 3.900 14 C 0.128 3.872 15 N -0.611 5.611 16 C -0.262 4.262 17 H 0.056 0.944 18 C -0.009 4.009 19 N -0.924 5.924 20 Si 0.894 3.106 21 H -0.304 1.304 22 H -0.294 1.294 23 H -0.240 1.240 24 C 0.131 3.869 25 C 0.124 3.876 26 C -0.300 4.300 27 C 0.098 3.902 28 C -0.089 4.089 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.103 0.897 37 H 0.417 0.583 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.033 0.967 41 H 0.064 0.936 42 H 0.263 0.737 43 H 0.028 0.972 44 H 0.080 0.920 45 H 0.097 0.903 46 H 0.072 0.928 47 H 0.153 0.847 48 H 0.097 0.903 49 H 0.091 0.909 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.551 10.589 -10.067 32.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.055 3.945 4 H 0.150 0.850 5 C -0.214 4.214 6 N -0.142 5.142 7 N -0.175 5.175 8 C 0.046 3.954 9 N -0.299 5.299 10 C 0.417 3.583 11 O -0.475 6.475 12 N -0.347 5.347 13 C -0.025 4.025 14 C 0.002 3.998 15 N -0.335 5.335 16 C -0.391 4.391 17 H 0.073 0.927 18 C -0.207 4.207 19 N -0.567 5.567 20 Si 0.722 3.278 21 H -0.233 1.233 22 H -0.221 1.221 23 H -0.164 1.164 24 C 0.005 3.995 25 C 0.000 4.000 26 C -0.330 4.330 27 C -0.030 4.030 28 C -0.147 4.147 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.256 0.744 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.051 0.949 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.046 0.954 44 H 0.098 0.902 45 H 0.115 0.885 46 H 0.090 0.910 47 H 0.170 0.830 48 H 0.115 0.885 49 H 0.109 0.891 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -29.211 10.399 -9.755 32.505 hybrid contribution 1.170 -1.342 0.199 1.792 sum -28.041 9.057 -9.556 30.978 Atomic orbital electron populations 1.21782 0.92259 1.02918 1.03369 1.21813 0.98117 0.94596 1.02111 1.21758 0.72391 0.98644 1.01742 0.85004 1.22146 1.03539 1.00112 0.95649 1.48614 1.06305 1.42314 1.16988 1.77185 0.96814 1.25851 1.17651 1.19017 0.85850 0.96902 0.93666 1.41736 1.01627 1.58085 1.28424 1.15605 0.80117 0.79309 0.83296 1.90791 1.85851 1.49606 1.21293 1.47206 1.04699 1.57216 1.25602 1.22402 1.00740 0.93774 0.85550 1.21800 0.85802 0.94447 0.97795 1.44383 1.01439 1.63731 1.23958 1.18714 0.91398 1.06385 1.22565 0.92657 1.25663 0.98759 1.00275 0.96018 1.70186 1.46228 1.29848 1.10458 0.86662 0.79995 0.82763 0.78409 1.23295 1.22055 1.16421 1.21472 0.99247 0.91652 0.87087 1.22010 0.80853 0.97086 1.00084 1.21550 0.97166 1.12929 1.01386 1.21656 0.90924 0.97190 0.93232 1.20616 1.02262 0.99733 0.92040 0.90806 0.92074 0.91144 0.92563 0.92707 0.93245 0.92491 0.87801 0.74363 0.90322 0.88478 0.94878 0.91747 0.92795 0.95367 0.90193 0.88492 0.90974 0.82961 0.88487 0.89067 0.88724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.67 71.98 0.70 -0.36 16 2 C -0.13 -1.73 5.66 30.59 0.17 -1.55 16 3 C 0.15 2.08 3.11 44.99 0.14 2.22 16 4 H 0.13 0.95 6.66 -2.39 -0.02 0.93 16 5 C -0.16 -1.93 9.21 71.98 0.66 -1.26 16 6 N -0.36 -7.89 3.28 -314.32 -1.03 -8.92 16 7 N -0.34 -9.93 12.44 -54.43 -0.68 -10.61 16 8 C 0.30 9.47 8.11 133.32 1.08 10.55 16 9 N -0.65 -19.73 5.36 -321.23 -1.72 -21.45 16 10 C 0.72 24.53 8.26 179.06 1.48 26.00 16 11 O -0.60 -22.99 12.90 -3.99 -0.05 -23.05 16 12 N -0.61 -20.37 2.94 -835.17 -2.46 -22.82 16 13 C 0.10 3.18 6.59 86.57 0.57 3.75 16 14 C 0.13 5.12 4.56 86.56 0.39 5.51 16 15 N -0.61 -27.57 2.71 -697.35 -1.89 -29.46 16 16 C -0.26 -14.13 9.85 84.03 0.83 -13.30 16 17 H 0.06 3.24 8.05 -2.91 -0.02 3.21 16 18 C -0.01 -0.50 4.81 84.86 0.41 -0.10 16 19 N -0.92 -55.36 13.97 21.65 0.30 -55.06 16 20 Si 0.89 43.18 26.46 68.60 1.82 45.00 16 21 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 22 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 23 H -0.24 -10.79 4.96 99.48 0.49 -10.30 16 24 C 0.13 4.99 6.67 86.41 0.58 5.56 16 25 C 0.12 4.13 6.60 86.41 0.57 4.70 16 26 C -0.30 -9.00 9.52 22.11 0.21 -8.79 16 27 C 0.10 2.18 6.92 41.39 0.29 2.47 16 28 C -0.09 -1.03 9.94 71.24 0.71 -0.32 16 29 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.40 6.56 -2.39 -0.02 0.38 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.10 0.67 6.56 -2.39 -0.02 0.65 16 37 H 0.42 10.98 6.29 -92.71 -0.58 10.40 16 38 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.10 2.45 5.61 -2.39 -0.01 2.44 16 40 H 0.03 1.34 6.77 -2.39 -0.02 1.33 16 41 H 0.06 2.77 5.59 -2.39 -0.01 2.75 16 42 H 0.26 14.99 8.31 -92.71 -0.77 14.21 16 43 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.08 2.95 7.93 -2.39 -0.02 2.93 16 45 H 0.10 3.11 6.99 -2.38 -0.02 3.09 16 46 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 47 H 0.15 5.12 5.93 -2.91 -0.02 5.10 16 48 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.09 0.60 7.09 -2.39 -0.02 0.59 16 Total: -1.00 -72.82 386.62 3.23 -69.59 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.16 Total: 21.69 kcal Atomic # 6 Polarization: 26.30 SS G_CDS: 8.78 Total: 35.08 kcal Atomic # 7 Polarization: -140.84 SS G_CDS: -7.47 Total: -148.32 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.05 Total: -23.05 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.82 Total: 45.00 kcal Total: -72.82 3.23 -69.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675747097.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.984 kcal (2) G-P(sol) polarization free energy of solvation -72.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds