Wall clock time and date at job start Tue Mar 31 2020 18:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47320 * 2 1 4 4 H 1.08997 * 109.46942 * 55.00730 * 3 2 1 5 5 C 1.52990 * 109.47708 * 295.00557 * 3 2 1 6 6 N 1.46506 * 109.47202 * 174.99950 * 3 2 1 7 7 N 1.40072 * 125.96977 * 59.69603 * 6 3 2 8 8 C 1.31211 * 108.16941 * 179.85280 * 7 6 3 9 9 N 1.40195 * 125.97535 * 180.14275 * 8 7 6 10 10 C 1.34778 * 120.00153 * 180.30918 * 9 8 7 11 11 O 1.21592 * 119.99625 * 355.03728 * 10 9 8 12 12 N 1.34776 * 120.00384 * 175.04751 * 10 9 8 13 13 C 1.46973 * 120.59051 * 4.70554 * 12 10 9 14 14 C 1.53815 * 108.39540 * 124.76127 * 13 12 10 15 15 N 1.46966 * 108.57922 * 49.63857 * 14 13 12 16 16 C 1.36930 * 120.59243 * 124.62098 * 15 14 13 17 17 H 1.08003 * 119.99982 * 214.95317 * 16 15 14 18 18 C 1.38810 * 119.99942 * 34.95860 * 16 15 14 19 19 N 1.31617 * 120.00165 * 15.42915 * 18 16 15 20 20 Si 1.86805 * 119.99845 * 195.43599 * 18 16 15 21 21 H 1.48497 * 109.47158 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47341 * 119.99671 * 20 18 16 23 23 H 1.48509 * 109.46851 * 239.99833 * 20 18 16 24 24 C 1.46961 * 118.80973 * 304.64585 * 15 14 13 25 25 C 1.46960 * 120.59920 * 184.99258 * 12 10 9 26 26 C 1.40405 * 108.05185 * 0.40346 * 8 7 6 27 27 C 1.34957 * 125.97831 * 240.00676 * 6 3 2 28 28 C 1.50697 * 126.07524 * 359.97438 * 27 6 3 29 29 H 1.08998 * 109.47120 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46740 * 299.99527 * 1 2 3 31 31 H 1.08998 * 109.47106 * 59.99082 * 1 2 3 32 32 H 1.09002 * 109.46740 * 240.00473 * 2 1 3 33 33 H 1.09000 * 109.47602 * 120.01053 * 2 1 3 34 34 H 1.08999 * 109.47057 * 59.99684 * 5 3 2 35 35 H 1.08998 * 109.47590 * 179.97438 * 5 3 2 36 36 H 1.09006 * 109.47343 * 299.99606 * 5 3 2 37 37 H 0.96995 * 119.99953 * 0.30528 * 9 8 7 38 38 H 1.08994 * 109.61141 * 244.54281 * 13 12 10 39 39 H 1.09003 * 109.60651 * 5.05763 * 13 12 10 40 40 H 1.09004 * 109.73978 * 289.84979 * 14 13 12 41 41 H 1.08996 * 109.53114 * 169.30058 * 14 13 12 42 42 H 0.97006 * 119.99703 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.61561 * 295.47897 * 24 15 14 44 44 H 1.09007 * 109.75192 * 175.05507 * 24 15 14 45 45 H 1.09008 * 109.60807 * 354.94370 * 25 12 10 46 46 H 1.08992 * 109.61394 * 115.28129 * 25 12 10 47 47 H 1.08002 * 126.06310 * 179.71995 * 26 8 7 48 48 H 1.09003 * 109.46775 * 89.99992 * 28 27 6 49 49 H 1.08996 * 109.47677 * 210.00638 * 28 27 6 50 50 H 1.09004 * 109.46796 * 330.00657 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 1.6353 2.1266 -1.3072 6 7 3.5002 1.4442 0.1204 7 7 4.3998 0.8449 -0.7704 8 6 5.6168 1.0615 -0.3303 9 7 6.8024 0.6275 -0.9398 10 6 7.9933 0.9138 -0.3774 11 8 8.0450 1.6242 0.6080 12 7 9.1267 0.4130 -0.9074 13 6 9.0901 -0.3612 -2.1562 14 6 10.0546 0.2920 -3.1607 15 7 11.3484 0.5049 -2.4970 16 6 12.4998 -0.0049 -3.0350 17 1 13.2876 -0.3599 -2.3870 18 6 12.6546 -0.0653 -4.4131 19 7 11.8553 0.6278 -5.1961 20 14 13.9972 -1.1304 -5.1564 21 1 14.7540 -1.8027 -4.0700 22 1 13.3843 -2.1543 -6.0402 23 1 14.9209 -0.2804 -5.9499 24 6 11.3843 1.2742 -1.2453 25 6 10.4206 0.6258 -0.2438 26 6 5.5239 1.7987 0.8610 27 6 4.2132 2.0183 1.1120 28 6 3.6493 2.7707 2.2896 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5140 0.8899 34 1 0.5490 2.1254 -1.3967 35 1 1.9983 3.1544 -1.3069 36 1 2.0699 1.5877 -2.1491 37 1 6.7656 0.1211 -1.7663 38 1 9.4017 -1.3870 -1.9599 39 1 8.0781 -0.3546 -2.5611 40 1 9.6504 1.2493 -3.4900 41 1 10.1877 -0.3665 -4.0190 42 1 11.9632 0.5852 -6.1592 43 1 11.0749 2.3014 -1.4382 44 1 12.3951 1.2672 -0.8374 45 1 10.2875 1.2843 0.6147 46 1 10.8232 -0.3311 0.0883 47 1 6.3522 2.1310 1.4692 48 1 3.4697 2.0774 3.1114 49 1 4.3595 3.5342 2.6070 50 1 2.7107 3.2445 2.0023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675747098.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:50 Heat of formation + Delta-G solvation = 83.291509 kcal Electronic energy + Delta-G solvation = -29425.582300 eV Core-core repulsion = 25490.866203 eV Total energy + Delta-G solvation = -3934.716098 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.41211 -39.90795 -37.16098 -36.48374 -34.59266 -33.84862 -32.15461 -31.36151 -30.80311 -30.16336 -28.64350 -27.05109 -26.86090 -24.85153 -23.80962 -23.00278 -22.06197 -21.08579 -20.36260 -19.68530 -18.99933 -17.81058 -16.88064 -16.26786 -16.10212 -15.67518 -15.32431 -15.05231 -14.86936 -14.52688 -14.09625 -13.88283 -13.78598 -13.56914 -13.47011 -13.29536 -13.19295 -13.09662 -12.86868 -12.69414 -12.44841 -12.38425 -12.10727 -11.82923 -11.61236 -11.37974 -11.36365 -11.15215 -10.86028 -10.77472 -10.48537 -10.46849 -10.46253 -10.29510 -10.11318 -9.84363 -9.55593 -8.61735 -8.56447 -8.36885 -7.93079 -6.63671 -5.87532 -3.38553 1.88449 2.14610 2.82851 2.99665 3.32055 3.40776 3.42925 3.68675 4.04316 4.22602 4.42913 4.49508 4.54657 4.68602 4.87114 4.94915 4.99951 5.15876 5.22081 5.29615 5.31586 5.32621 5.36732 5.55880 5.60810 5.61708 5.65099 5.72580 5.79089 5.83932 5.91518 5.92735 5.94494 6.01224 6.07494 6.17352 6.31711 6.33473 6.50117 6.77376 6.91369 7.00022 7.07649 7.15921 7.24322 7.36911 7.74104 7.80464 8.23857 8.39009 8.79293 9.11007 9.71908 10.33530 11.19915 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.021526 B = 0.002325 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.457959 B =12039.422038 C =12868.024343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.166 3.834 4 H 0.099 0.901 5 C -0.163 4.163 6 N -0.365 5.365 7 N -0.328 5.328 8 C 0.326 3.674 9 N -0.651 5.651 10 C 0.714 3.286 11 O -0.580 6.580 12 N -0.607 5.607 13 C 0.083 3.917 14 C 0.163 3.837 15 N -0.589 5.589 16 C -0.261 4.261 17 H 0.065 0.935 18 C 0.009 3.991 19 N -0.898 5.898 20 Si 0.903 3.097 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.289 1.289 24 C 0.131 3.869 25 C 0.114 3.886 26 C -0.262 4.262 27 C 0.081 3.919 28 C -0.089 4.089 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.410 0.590 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.027 0.973 41 H 0.089 0.911 42 H 0.255 0.745 43 H 0.025 0.975 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.063 0.937 47 H 0.172 0.828 48 H 0.077 0.923 49 H 0.086 0.914 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.863 0.686 11.737 24.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.170 4.170 3 C 0.064 3.936 4 H 0.117 0.883 5 C -0.220 4.220 6 N -0.150 5.150 7 N -0.158 5.158 8 C 0.069 3.931 9 N -0.305 5.305 10 C 0.415 3.585 11 O -0.458 6.458 12 N -0.343 5.343 13 C -0.042 4.042 14 C 0.036 3.964 15 N -0.312 5.312 16 C -0.390 4.390 17 H 0.083 0.917 18 C -0.190 4.190 19 N -0.541 5.541 20 Si 0.732 3.268 21 H -0.201 1.201 22 H -0.215 1.215 23 H -0.216 1.216 24 C 0.004 3.996 25 C -0.010 4.010 26 C -0.292 4.292 27 C -0.045 4.045 28 C -0.147 4.147 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.249 0.751 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.045 0.955 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.081 0.919 47 H 0.189 0.811 48 H 0.096 0.904 49 H 0.105 0.895 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -22.528 0.669 11.338 25.229 hybrid contribution 1.124 -0.500 -0.584 1.362 sum -21.404 0.169 10.754 23.954 Atomic orbital electron populations 1.21806 0.94636 1.02367 1.02082 1.21859 0.96155 0.95267 1.03714 1.21261 0.74602 0.97832 0.99934 0.88340 1.22179 1.01763 1.01010 0.97096 1.48198 1.05175 1.43459 1.18193 1.77265 0.96868 1.25187 1.16468 1.18818 0.85644 0.95799 0.92803 1.41921 1.01940 1.58377 1.28240 1.15595 0.79795 0.80488 0.82624 1.90784 1.85330 1.41550 1.28101 1.47230 1.05528 1.55520 1.26025 1.22720 1.00072 0.95970 0.85405 1.21140 0.84126 0.98187 0.92943 1.43879 1.03084 1.60209 1.23999 1.19167 0.95688 1.34612 0.89549 0.91697 1.25258 0.98117 0.98503 0.97165 1.70030 1.40263 1.40321 1.03485 0.86228 0.81445 0.80014 0.79081 1.20079 1.21456 1.21605 1.21348 0.96893 0.93691 0.87709 1.22166 0.81628 1.01009 0.96234 1.21598 0.96007 1.10814 1.00799 1.21077 0.91789 0.98837 0.92814 1.20418 1.01217 0.99484 0.93607 0.92102 0.92557 0.92066 0.90424 0.91516 0.90753 0.92147 0.90984 0.75124 0.91369 0.92080 0.95528 0.89242 0.93509 0.95741 0.91357 0.89677 0.91900 0.81106 0.90391 0.89503 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.67 37.16 0.36 -0.46 16 2 C -0.13 -1.05 5.66 -26.73 -0.15 -1.20 16 3 C 0.17 1.42 3.11 -67.93 -0.21 1.21 16 4 H 0.10 0.63 6.66 -51.93 -0.35 0.28 16 5 C -0.16 -1.31 9.21 37.15 0.34 -0.97 16 6 N -0.37 -4.55 3.28 -50.72 -0.17 -4.72 16 7 N -0.33 -5.05 12.44 31.44 0.39 -4.66 16 8 C 0.33 5.43 8.11 -154.36 -1.25 4.18 16 9 N -0.65 -10.80 5.36 -15.50 -0.08 -10.88 16 10 C 0.71 13.26 8.26 -86.92 -0.72 12.54 16 11 O -0.58 -11.83 12.90 5.28 0.07 -11.77 16 12 N -0.61 -11.15 2.94 -177.94 -0.52 -11.68 16 13 C 0.08 1.48 6.59 -3.36 -0.02 1.46 16 14 C 0.16 3.67 5.48 -3.36 -0.02 3.65 16 15 N -0.59 -14.27 2.93 -171.77 -0.50 -14.77 16 16 C -0.26 -6.88 9.51 -15.06 -0.14 -7.03 16 17 H 0.07 1.69 7.88 -52.48 -0.41 1.28 16 18 C 0.01 0.25 4.90 -17.43 -0.09 0.17 16 19 N -0.90 -25.36 11.60 55.49 0.64 -24.72 16 20 Si 0.90 21.00 29.58 -169.99 -5.03 15.97 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 C 0.13 2.73 6.67 -3.60 -0.02 2.71 16 25 C 0.11 2.08 6.60 -3.60 -0.02 2.06 16 26 C -0.26 -4.15 9.52 -39.83 -0.38 -4.53 16 27 C 0.08 1.02 6.92 -82.29 -0.57 0.45 16 28 C -0.09 -0.71 9.94 36.00 0.36 -0.35 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.30 6.56 -51.93 -0.34 -0.04 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.41 6.56 -51.93 -0.34 0.07 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.41 6.08 6.29 -40.82 -0.26 5.82 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 0.92 5.61 -51.93 -0.29 0.63 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 2.19 6.46 -51.93 -0.34 1.86 16 42 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 1.36 7.94 -51.92 -0.41 0.95 16 45 H 0.08 1.51 6.99 -51.92 -0.36 1.15 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.17 2.95 5.93 -52.49 -0.31 2.64 16 48 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.07 0.40 7.08 -51.93 -0.37 0.04 16 LS Contribution 392.47 15.07 5.91 5.91 Total: -1.00 -32.23 392.47 -9.81 -42.04 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -7.99 Total: 5.37 kcal Atomic # 6 Polarization: 16.43 SS G_CDS: -2.54 Total: 13.89 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -0.24 Total: -71.43 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.07 Total: -11.77 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.23 -9.81 -42.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675747098.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.329 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds