Wall clock time and date at job start Tue Mar 31 2020 18:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47320 * 2 1 4 4 H 1.08997 * 109.46942 * 55.00730 * 3 2 1 5 5 C 1.52990 * 109.47708 * 295.00557 * 3 2 1 6 6 N 1.46506 * 109.47202 * 174.99950 * 3 2 1 7 7 N 1.40072 * 125.96977 * 59.69603 * 6 3 2 8 8 C 1.31211 * 108.16941 * 179.85280 * 7 6 3 9 9 N 1.40195 * 125.97535 * 180.14275 * 8 7 6 10 10 C 1.34778 * 120.00153 * 180.30918 * 9 8 7 11 11 O 1.21592 * 119.99625 * 355.03728 * 10 9 8 12 12 N 1.34776 * 120.00384 * 175.04751 * 10 9 8 13 13 C 1.46973 * 120.59051 * 4.70554 * 12 10 9 14 14 C 1.53815 * 108.39540 * 124.76127 * 13 12 10 15 15 N 1.46966 * 108.57922 * 49.63857 * 14 13 12 16 16 C 1.36930 * 120.59243 * 124.62098 * 15 14 13 17 17 H 1.08003 * 119.99982 * 214.95317 * 16 15 14 18 18 C 1.38810 * 119.99942 * 34.95860 * 16 15 14 19 19 N 1.31617 * 120.00165 * 15.42915 * 18 16 15 20 20 Si 1.86805 * 119.99845 * 195.43599 * 18 16 15 21 21 H 1.48497 * 109.47158 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47341 * 119.99671 * 20 18 16 23 23 H 1.48509 * 109.46851 * 239.99833 * 20 18 16 24 24 C 1.46961 * 118.80973 * 304.64585 * 15 14 13 25 25 C 1.46960 * 120.59920 * 184.99258 * 12 10 9 26 26 C 1.40405 * 108.05185 * 0.40346 * 8 7 6 27 27 C 1.34957 * 125.97831 * 240.00676 * 6 3 2 28 28 C 1.50697 * 126.07524 * 359.97438 * 27 6 3 29 29 H 1.08998 * 109.47120 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46740 * 299.99527 * 1 2 3 31 31 H 1.08998 * 109.47106 * 59.99082 * 1 2 3 32 32 H 1.09002 * 109.46740 * 240.00473 * 2 1 3 33 33 H 1.09000 * 109.47602 * 120.01053 * 2 1 3 34 34 H 1.08999 * 109.47057 * 59.99684 * 5 3 2 35 35 H 1.08998 * 109.47590 * 179.97438 * 5 3 2 36 36 H 1.09006 * 109.47343 * 299.99606 * 5 3 2 37 37 H 0.96995 * 119.99953 * 0.30528 * 9 8 7 38 38 H 1.08994 * 109.61141 * 244.54281 * 13 12 10 39 39 H 1.09003 * 109.60651 * 5.05763 * 13 12 10 40 40 H 1.09004 * 109.73978 * 289.84979 * 14 13 12 41 41 H 1.08996 * 109.53114 * 169.30058 * 14 13 12 42 42 H 0.97006 * 119.99703 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.61561 * 295.47897 * 24 15 14 44 44 H 1.09007 * 109.75192 * 175.05507 * 24 15 14 45 45 H 1.09008 * 109.60807 * 354.94370 * 25 12 10 46 46 H 1.08992 * 109.61394 * 115.28129 * 25 12 10 47 47 H 1.08002 * 126.06310 * 179.71995 * 26 8 7 48 48 H 1.09003 * 109.46775 * 89.99992 * 28 27 6 49 49 H 1.08996 * 109.47677 * 210.00638 * 28 27 6 50 50 H 1.09004 * 109.46796 * 330.00657 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 1.6353 2.1266 -1.3072 6 7 3.5002 1.4442 0.1204 7 7 4.3998 0.8449 -0.7704 8 6 5.6168 1.0615 -0.3303 9 7 6.8024 0.6275 -0.9398 10 6 7.9933 0.9138 -0.3774 11 8 8.0450 1.6242 0.6080 12 7 9.1267 0.4130 -0.9074 13 6 9.0901 -0.3612 -2.1562 14 6 10.0546 0.2920 -3.1607 15 7 11.3484 0.5049 -2.4970 16 6 12.4998 -0.0049 -3.0350 17 1 13.2876 -0.3599 -2.3870 18 6 12.6546 -0.0653 -4.4131 19 7 11.8553 0.6278 -5.1961 20 14 13.9972 -1.1304 -5.1564 21 1 14.7540 -1.8027 -4.0700 22 1 13.3843 -2.1543 -6.0402 23 1 14.9209 -0.2804 -5.9499 24 6 11.3843 1.2742 -1.2453 25 6 10.4206 0.6258 -0.2438 26 6 5.5239 1.7987 0.8610 27 6 4.2132 2.0183 1.1120 28 6 3.6493 2.7707 2.2896 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5140 0.8899 34 1 0.5490 2.1254 -1.3967 35 1 1.9983 3.1544 -1.3069 36 1 2.0699 1.5877 -2.1491 37 1 6.7656 0.1211 -1.7663 38 1 9.4017 -1.3870 -1.9599 39 1 8.0781 -0.3546 -2.5611 40 1 9.6504 1.2493 -3.4900 41 1 10.1877 -0.3665 -4.0190 42 1 11.9632 0.5852 -6.1592 43 1 11.0749 2.3014 -1.4382 44 1 12.3951 1.2672 -0.8374 45 1 10.2875 1.2843 0.6147 46 1 10.8232 -0.3311 0.0883 47 1 6.3522 2.1310 1.4692 48 1 3.4697 2.0774 3.1114 49 1 4.3595 3.5342 2.6070 50 1 2.7107 3.2445 2.0023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675747098.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:49 Heat of formation + Delta-G solvation = 64.796924 kcal Electronic energy + Delta-G solvation = -29426.384286 eV Core-core repulsion = 25490.866203 eV Total energy + Delta-G solvation = -3935.518083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.52587 -41.30963 -38.68715 -37.41941 -35.90286 -35.53839 -33.36179 -32.85451 -31.91399 -31.63030 -29.53226 -28.58841 -27.92654 -25.83667 -25.30431 -24.58576 -23.38407 -22.18644 -21.69506 -20.72389 -20.46142 -19.30283 -18.05209 -17.95211 -17.22993 -16.96814 -16.73641 -16.15893 -16.10279 -15.86999 -15.50902 -15.28287 -15.23445 -15.02438 -14.83046 -14.61111 -14.24559 -13.94613 -13.77355 -13.51305 -13.37541 -13.30025 -13.20706 -13.03329 -12.71489 -12.68784 -12.54853 -12.51519 -12.19433 -12.13423 -12.07025 -11.96711 -11.84013 -11.63795 -11.49766 -11.47826 -11.06812 -10.61385 -9.94952 -9.62954 -9.14572 -8.58475 -7.89655 -5.45088 0.82247 1.02118 1.47489 1.50344 1.56984 1.60680 1.82406 2.30855 2.49957 2.71358 3.25457 3.49222 3.58195 3.73618 3.85999 4.04510 4.10301 4.15517 4.22637 4.27488 4.32849 4.43147 4.49343 4.52436 4.57109 4.62564 4.68256 4.73918 4.76449 4.78079 4.82611 4.94736 4.99026 5.04855 5.06851 5.11941 5.12086 5.18168 5.20491 5.30126 5.42318 5.45115 5.57300 5.65870 5.76999 5.86279 6.22781 6.38610 6.53439 6.94077 7.10856 7.34901 7.76134 8.34515 9.15241 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.021526 B = 0.002325 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.457959 B =12039.422038 C =12868.024343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.154 3.846 4 H 0.133 0.867 5 C -0.159 4.159 6 N -0.357 5.357 7 N -0.345 5.345 8 C 0.301 3.699 9 N -0.645 5.645 10 C 0.714 3.286 11 O -0.600 6.600 12 N -0.610 5.610 13 C 0.099 3.901 14 C 0.170 3.830 15 N -0.606 5.606 16 C -0.267 4.267 17 H 0.069 0.931 18 C -0.042 4.042 19 N -0.933 5.933 20 Si 0.969 3.031 21 H -0.264 1.264 22 H -0.288 1.288 23 H -0.295 1.295 24 C 0.131 3.869 25 C 0.125 3.875 26 C -0.301 4.301 27 C 0.099 3.901 28 C -0.088 4.088 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.416 0.584 38 H 0.080 0.920 39 H 0.089 0.911 40 H -0.002 1.002 41 H 0.066 0.934 42 H 0.252 0.748 43 H 0.006 0.994 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.152 0.848 48 H 0.097 0.903 49 H 0.090 0.910 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.151 0.277 13.340 27.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.054 3.946 4 H 0.151 0.849 5 C -0.216 4.216 6 N -0.142 5.142 7 N -0.176 5.176 8 C 0.045 3.955 9 N -0.299 5.299 10 C 0.415 3.585 11 O -0.479 6.479 12 N -0.346 5.346 13 C -0.025 4.025 14 C 0.043 3.957 15 N -0.329 5.329 16 C -0.397 4.397 17 H 0.086 0.914 18 C -0.238 4.238 19 N -0.577 5.577 20 Si 0.797 3.203 21 H -0.189 1.189 22 H -0.214 1.214 23 H -0.222 1.222 24 C 0.005 3.995 25 C 0.001 3.999 26 C -0.331 4.331 27 C -0.029 4.029 28 C -0.146 4.146 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.123 0.877 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.255 0.745 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.016 0.984 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.024 0.976 44 H 0.096 0.904 45 H 0.110 0.890 46 H 0.095 0.905 47 H 0.170 0.830 48 H 0.116 0.884 49 H 0.109 0.891 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -24.853 0.243 12.949 28.025 hybrid contribution 1.712 -0.293 -1.032 2.020 sum -23.142 -0.050 11.917 26.030 Atomic orbital electron populations 1.21782 0.92235 1.02963 1.03332 1.21798 0.98111 0.94409 1.02170 1.21765 0.72354 0.98824 1.01608 0.84929 1.22161 1.03585 1.00062 0.95807 1.48623 1.06326 1.41986 1.17271 1.77190 0.96811 1.25886 1.17682 1.19037 0.85844 0.97005 0.93591 1.41746 1.01667 1.58207 1.28263 1.15638 0.80188 0.80191 0.82489 1.90777 1.85710 1.42335 1.29038 1.47237 1.05635 1.55672 1.26081 1.22490 1.00311 0.95653 0.84062 1.20949 0.84606 0.96588 0.93545 1.44148 1.03178 1.60802 1.24816 1.19485 0.96354 1.34001 0.89874 0.91370 1.25999 1.00395 0.99817 0.97615 1.70175 1.42138 1.42015 1.03391 0.85200 0.78770 0.78160 0.78210 1.18852 1.21424 1.22181 1.21411 0.98283 0.92627 0.87192 1.22012 0.80989 1.01559 0.95345 1.21550 0.97218 1.13054 1.01300 1.21652 0.90850 0.97135 0.93290 1.20618 1.02331 0.99582 0.92074 0.91949 0.90777 0.91269 0.92727 0.92367 0.87691 0.92676 0.93341 0.74451 0.90188 0.89314 0.98408 0.91543 0.93920 0.97597 0.90435 0.89005 0.90463 0.83033 0.88449 0.89097 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.67 71.98 0.70 -0.43 16 2 C -0.13 -1.78 5.66 30.59 0.17 -1.60 16 3 C 0.15 2.26 3.11 44.99 0.14 2.40 16 4 H 0.13 1.08 6.66 -2.39 -0.02 1.06 16 5 C -0.16 -2.21 9.21 71.98 0.66 -1.55 16 6 N -0.36 -8.43 3.28 -314.37 -1.03 -9.45 16 7 N -0.35 -10.63 12.44 -54.43 -0.68 -11.31 16 8 C 0.30 10.15 8.11 133.31 1.08 11.23 16 9 N -0.65 -21.66 5.36 -321.22 -1.72 -23.38 16 10 C 0.71 26.73 8.26 179.05 1.48 28.21 16 11 O -0.60 -24.86 12.90 -4.00 -0.05 -24.91 16 12 N -0.61 -22.33 2.94 -835.13 -2.46 -24.79 16 13 C 0.10 3.51 6.59 86.56 0.57 4.08 16 14 C 0.17 7.85 5.48 86.57 0.47 8.33 16 15 N -0.61 -29.80 2.93 -697.35 -2.04 -31.84 16 16 C -0.27 -14.20 9.51 84.03 0.80 -13.40 16 17 H 0.07 3.52 7.88 -2.91 -0.02 3.50 16 18 C -0.04 -2.27 4.90 84.86 0.42 -1.85 16 19 N -0.93 -54.05 11.60 21.65 0.25 -53.80 16 20 Si 0.97 43.55 29.58 68.60 2.03 45.58 16 21 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 24 C 0.13 5.54 6.67 86.42 0.58 6.12 16 25 C 0.12 4.51 6.60 86.42 0.57 5.08 16 26 C -0.30 -9.62 9.52 22.11 0.21 -9.41 16 27 C 0.10 2.35 6.92 41.39 0.29 2.64 16 28 C -0.09 -1.12 9.94 71.23 0.71 -0.41 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.07 0.44 6.56 -2.39 -0.02 0.42 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.10 0.81 6.56 -2.39 -0.02 0.80 16 35 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.42 12.37 6.29 -92.71 -0.58 11.78 16 38 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.09 2.63 5.61 -2.39 -0.01 2.62 16 40 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.07 3.37 6.46 -2.39 -0.02 3.35 16 42 H 0.25 14.10 8.31 -92.70 -0.77 13.33 16 43 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 44 H 0.08 3.08 7.94 -2.38 -0.02 3.06 16 45 H 0.09 3.22 6.99 -2.38 -0.02 3.20 16 46 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 47 H 0.15 5.41 5.93 -2.91 -0.02 5.40 16 48 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.10 0.70 7.08 -2.38 -0.02 0.68 16 Total: -1.00 -72.32 392.47 3.51 -68.81 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.36 Total: 25.66 kcal Atomic # 6 Polarization: 30.58 SS G_CDS: 8.84 Total: 39.43 kcal Atomic # 7 Polarization: -146.89 SS G_CDS: -7.67 Total: -154.57 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.05 Total: -24.91 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -72.32 3.51 -68.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675747098.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.605 kcal (2) G-P(sol) polarization free energy of solvation -72.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds