Wall clock time and date at job start Tue Mar 31 2020 18:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34772 * 119.99888 * 2 1 4 4 O 1.21561 * 120.00153 * 183.61146 * 3 2 1 5 5 C 1.47871 * 120.00280 * 3.60782 * 3 2 1 6 6 N 1.34546 * 126.04660 * 352.59532 * 5 3 2 7 7 C 1.30872 * 107.27095 * 180.02562 * 6 5 3 8 8 N 1.34584 * 107.62307 * 359.97438 * 7 6 5 9 9 C 1.46500 * 125.74910 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46985 * 75.00084 * 9 8 7 11 11 C 1.52997 * 109.47329 * 194.99809 * 9 8 7 12 12 C 1.53002 * 109.47223 * 315.00217 * 9 8 7 13 13 N 1.28848 * 108.50329 * 0.02562 * 8 7 6 14 14 C 1.46495 * 119.99943 * 180.02562 * 2 1 3 15 15 H 1.09001 * 109.47508 * 180.02562 * 14 2 1 16 16 C 1.53002 * 109.47236 * 299.99704 * 14 2 1 17 17 N 1.46494 * 109.47415 * 305.00410 * 16 14 2 18 18 C 1.36937 * 120.00152 * 179.97438 * 17 16 14 19 19 H 1.07992 * 119.99846 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99719 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99628 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00379 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46948 * 90.00036 * 22 20 18 24 24 H 1.48499 * 109.47307 * 210.00084 * 22 20 18 25 25 H 1.48502 * 109.46796 * 330.00337 * 22 20 18 26 26 C 1.53003 * 109.47250 * 60.00064 * 14 2 1 27 27 C 1.52996 * 117.49831 * 128.74537 * 26 14 2 28 28 C 1.52999 * 117.49827 * 60.08587 * 26 14 2 29 29 H 1.08998 * 109.47099 * 83.95568 * 1 2 3 30 30 H 1.08999 * 109.46991 * 203.95678 * 1 2 3 31 31 H 1.08996 * 109.47038 * 323.95401 * 1 2 3 32 32 H 1.07996 * 126.19081 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.46719 * 59.99929 * 10 9 8 34 34 H 1.08999 * 109.47118 * 180.02562 * 10 9 8 35 35 H 1.08997 * 109.46832 * 300.00147 * 10 9 8 36 36 H 1.09003 * 109.46810 * 60.00279 * 11 9 8 37 37 H 1.08999 * 109.47229 * 180.02562 * 11 9 8 38 38 H 1.09001 * 109.47695 * 300.00239 * 11 9 8 39 39 H 1.09000 * 109.46738 * 59.99698 * 12 9 8 40 40 H 1.08999 * 109.47190 * 179.97438 * 12 9 8 41 41 H 1.08995 * 109.46852 * 299.99989 * 12 9 8 42 42 H 1.09002 * 109.46783 * 65.00130 * 16 14 2 43 43 H 1.09000 * 109.47305 * 184.99881 * 16 14 2 44 44 H 0.97008 * 119.99857 * 359.97438 * 17 16 14 45 45 H 0.97009 * 119.99992 * 179.97438 * 21 20 18 46 46 H 1.09002 * 115.54901 * 274.41814 * 26 14 2 47 47 H 1.08995 * 117.50067 * 0.02562 * 27 26 14 48 48 H 1.09008 * 117.49521 * 145.02223 * 27 26 14 49 49 H 1.08997 * 117.49916 * 214.98155 * 28 26 14 50 50 H 1.08999 * 117.49730 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3526 1.1683 -0.0663 5 6 1.4017 2.4465 0.0806 6 7 0.0661 2.5960 0.0178 7 6 -0.1872 3.8755 0.1258 8 7 0.9902 4.5144 0.2556 9 6 1.1671 5.9609 0.4052 10 6 0.7784 6.3781 1.8250 11 6 2.6310 6.3249 0.1495 12 6 0.2766 6.6906 -0.6026 13 7 1.9356 3.6394 0.2261 14 6 2.1975 -1.2687 -0.0006 15 1 3.2691 -1.0696 0.0000 16 6 1.8279 -2.0715 1.2484 17 7 2.0706 -1.2574 2.4418 18 6 1.8103 -1.7698 3.6847 19 1 1.4264 -2.7742 3.7852 20 6 2.0408 -0.9985 4.8156 21 7 1.7910 -1.4912 6.0103 22 14 2.7068 0.7381 4.6420 23 1 1.5754 1.6928 4.5253 24 1 3.5202 1.0781 5.8370 25 1 3.5543 0.8238 3.4255 26 6 1.8279 -2.0705 -1.2502 27 6 2.9741 -2.6049 -2.1112 28 6 2.1227 -1.4347 -2.6102 29 1 -0.3633 0.1082 -1.0219 30 1 -0.3633 -0.9391 0.4173 31 1 -0.3633 0.8309 0.6047 32 1 -1.1642 4.3354 0.1130 33 1 1.4128 5.8582 2.5429 34 1 0.9095 7.4544 1.9362 35 1 -0.2645 6.1188 2.0072 36 1 2.9079 6.0277 -0.8620 37 1 2.7626 7.4011 0.2613 38 1 3.2654 5.8051 0.8675 39 1 -0.7663 6.4312 -0.4203 40 1 0.4078 7.7669 -0.4909 41 1 0.5535 6.3934 -1.6140 42 1 0.7742 -2.3469 1.2046 43 1 2.4376 -2.9739 1.2939 44 1 2.4158 -0.3553 2.3516 45 1 1.9525 -0.9523 6.8006 46 1 0.9323 -2.6860 -1.1659 47 1 3.9914 -2.3857 -1.7873 48 1 2.8323 -3.5720 -2.5938 49 1 1.4214 -1.6324 -3.4208 50 1 2.5796 -0.4451 -2.6147 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676250383.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:23 Heat of formation + Delta-G solvation = 114.170287 kcal Electronic energy + Delta-G solvation = -30665.972716 eV Core-core repulsion = 26732.595623 eV Total energy + Delta-G solvation = -3933.377093 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.53475 -39.79786 -37.73017 -37.22118 -35.24901 -34.10767 -32.61647 -31.46314 -30.92218 -28.75343 -28.01345 -27.87201 -26.49425 -24.87142 -23.59491 -23.02236 -22.24989 -21.21140 -20.59528 -20.20117 -19.13309 -17.59722 -17.39722 -16.70897 -16.58553 -16.20765 -15.39899 -15.00324 -14.83663 -14.59833 -14.48074 -14.20894 -13.99915 -13.53034 -13.28932 -13.23615 -12.91938 -12.83121 -12.68006 -12.56896 -12.36056 -12.27290 -12.06248 -11.80822 -11.75987 -11.69417 -11.43082 -11.31200 -11.05890 -10.90489 -10.72818 -10.41668 -10.31481 -10.10984 -10.09643 -9.99676 -9.67296 -9.52915 -9.51646 -8.83008 -8.26458 -7.14752 -5.70824 -3.04478 1.48642 2.01612 2.14819 3.04623 3.43379 3.50197 3.56999 3.57287 3.90664 3.97921 4.14960 4.18160 4.28783 4.55290 4.66999 4.68578 4.77150 4.91578 5.04351 5.05306 5.12232 5.12933 5.18401 5.24056 5.32701 5.40241 5.44607 5.56235 5.62828 5.67258 5.73545 5.74804 5.81256 5.85785 5.92931 5.98573 6.00365 6.07944 6.23200 6.24110 6.33922 6.40086 6.52091 6.62234 6.71058 6.96924 7.60525 8.02494 8.05762 8.42287 8.48856 9.28545 10.01991 10.22238 11.47599 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008992 B = 0.004904 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.065243 B = 5708.222635 C = 7914.859589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.574 5.574 3 C 0.611 3.389 4 O -0.526 6.526 5 C 0.149 3.851 6 N -0.475 5.475 7 C 0.182 3.818 8 N -0.294 5.294 9 C 0.166 3.834 10 C -0.162 4.162 11 C -0.149 4.149 12 C -0.158 4.158 13 N -0.249 5.249 14 C 0.159 3.841 15 H 0.102 0.898 16 C 0.152 3.848 17 N -0.752 5.752 18 C -0.238 4.238 19 H 0.092 0.908 20 C 0.008 3.992 21 N -0.935 5.935 22 Si 0.873 3.127 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.273 1.273 26 C -0.156 4.156 27 C -0.170 4.170 28 C -0.171 4.171 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.220 0.780 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.033 0.967 43 H 0.041 0.959 44 H 0.362 0.638 45 H 0.258 0.742 46 H 0.110 0.890 47 H 0.096 0.904 48 H 0.095 0.905 49 H 0.091 0.909 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.144 15.865 -18.395 25.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.305 5.305 3 C 0.394 3.606 4 O -0.400 6.400 5 C -0.131 4.131 6 N -0.200 5.200 7 C -0.113 4.113 8 N -0.090 5.090 9 C 0.084 3.916 10 C -0.220 4.220 11 C -0.206 4.206 12 C -0.216 4.216 13 N -0.087 5.087 14 C 0.056 3.944 15 H 0.120 0.880 16 C 0.024 3.976 17 N -0.398 5.398 18 C -0.368 4.368 19 H 0.110 0.890 20 C -0.187 4.187 21 N -0.583 5.583 22 Si 0.704 3.296 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.199 1.199 26 C -0.176 4.176 27 C -0.207 4.207 28 C -0.209 4.209 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.236 0.764 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.050 0.950 43 H 0.059 0.941 44 H 0.195 0.805 45 H 0.068 0.932 46 H 0.128 0.872 47 H 0.114 0.886 48 H 0.113 0.887 49 H 0.109 0.891 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.090 15.529 -18.229 24.482 hybrid contribution -0.010 1.550 0.165 1.559 sum -5.100 17.079 -18.064 25.378 Atomic orbital electron populations 1.22112 0.78087 1.04359 1.01791 1.47414 1.07987 1.04313 1.70824 1.16365 0.85679 0.81141 0.77401 1.90802 1.12611 1.86307 1.50283 1.23725 0.88237 0.93540 1.07602 1.71503 1.13548 1.14783 1.20194 1.26441 0.93814 0.88715 1.02299 1.47760 1.04331 1.08388 1.48561 1.21152 0.99382 0.73254 0.97775 1.22285 1.02934 1.03022 0.93777 1.21995 0.92405 1.02192 1.04053 1.22243 0.99412 1.01326 0.98629 1.74287 1.17479 0.98585 1.18356 1.21081 0.97756 0.81880 0.93706 0.88028 1.20940 0.98590 0.93372 0.84656 1.42657 1.79970 1.14980 1.02172 1.19046 1.36098 0.99909 0.81712 0.89049 1.24578 1.01456 0.97558 0.95144 1.69698 1.54963 1.36813 0.96822 0.86684 0.79147 0.86570 0.77233 1.21530 1.21627 1.19858 1.22540 1.00698 1.02972 0.91395 1.22982 0.96280 0.98072 1.03375 1.22821 1.03410 0.97864 0.96764 0.93085 0.91045 0.88401 0.76385 0.91088 0.89598 0.91250 0.91284 0.90368 0.90454 0.91120 0.89395 0.91195 0.94961 0.94103 0.80495 0.93184 0.87212 0.88584 0.88694 0.89067 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 8.93 59.85 0.53 1.77 16 2 N -0.57 -10.36 2.12 -175.04 -0.37 -10.73 16 3 C 0.61 12.37 7.39 -12.32 -0.09 12.28 16 4 O -0.53 -12.09 16.42 5.31 0.09 -12.01 16 5 C 0.15 2.72 7.64 -156.36 -1.19 1.52 16 6 N -0.47 -7.22 7.90 -12.37 -0.10 -7.32 16 7 C 0.18 2.09 11.71 -90.48 -1.06 1.03 16 8 N -0.29 -3.63 3.17 -49.84 -0.16 -3.79 16 9 C 0.17 1.36 1.23 -131.82 -0.16 1.19 16 10 C -0.16 -1.17 8.72 37.16 0.32 -0.85 16 11 C -0.15 -1.26 8.04 37.16 0.30 -0.96 16 12 C -0.16 -0.75 8.28 37.16 0.31 -0.45 16 13 N -0.25 -4.26 11.10 32.07 0.36 -3.90 16 14 C 0.16 2.81 2.37 -67.93 -0.16 2.65 16 15 H 0.10 2.01 6.66 -51.93 -0.35 1.67 16 16 C 0.15 3.11 5.50 -4.04 -0.02 3.09 16 17 N -0.75 -19.35 5.24 -59.91 -0.31 -19.66 16 18 C -0.24 -7.06 10.47 -15.06 -0.16 -7.21 16 19 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 20 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 21 N -0.93 -30.43 13.97 55.49 0.78 -29.65 16 22 Si 0.87 24.33 27.74 -169.99 -4.71 19.61 16 23 H -0.29 -7.98 7.11 56.52 0.40 -7.58 16 24 H -0.29 -8.02 7.11 56.52 0.40 -7.61 16 25 H -0.27 -7.68 6.52 56.52 0.37 -7.31 16 26 C -0.16 -2.15 4.83 -90.62 -0.44 -2.59 16 27 C -0.17 -2.07 10.18 -26.70 -0.27 -2.34 16 28 C -0.17 -2.16 10.13 -26.69 -0.27 -2.43 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.10 6.54 -51.93 -0.34 0.76 16 31 H 0.10 1.65 5.34 -51.93 -0.28 1.37 16 32 H 0.22 1.37 7.53 -52.49 -0.39 0.98 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.84 8.02 -51.93 -0.42 0.43 16 39 H 0.07 0.25 7.34 -51.93 -0.38 -0.13 16 40 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.03 0.64 6.87 -51.93 -0.36 0.28 16 43 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.36 9.71 4.93 -40.82 -0.20 9.51 16 45 H 0.26 8.03 8.31 -40.82 -0.34 7.69 16 46 H 0.11 1.38 8.11 -51.93 -0.42 0.96 16 47 H 0.10 1.23 8.05 -51.93 -0.42 0.82 16 48 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 49 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 402.78 15.07 6.07 6.07 Total: -1.00 -38.29 402.78 -9.04 -47.34 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -8.22 Total: 7.18 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -2.46 Total: 6.86 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: 0.19 Total: -75.05 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -4.71 Total: 19.61 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -38.29 -9.04 -47.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676250383.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.507 kcal (2) G-P(sol) polarization free energy of solvation -38.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds