Wall clock time and date at job start Tue Mar 31 2020 18:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34772 * 119.99888 * 2 1 4 4 O 1.21561 * 120.00153 * 183.61146 * 3 2 1 5 5 C 1.47871 * 120.00280 * 3.60782 * 3 2 1 6 6 N 1.34546 * 126.04660 * 352.59532 * 5 3 2 7 7 C 1.30872 * 107.27095 * 180.02562 * 6 5 3 8 8 N 1.34584 * 107.62307 * 359.97438 * 7 6 5 9 9 C 1.46500 * 125.74910 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46985 * 75.00084 * 9 8 7 11 11 C 1.52997 * 109.47329 * 194.99809 * 9 8 7 12 12 C 1.53002 * 109.47223 * 315.00217 * 9 8 7 13 13 N 1.28848 * 108.50329 * 0.02562 * 8 7 6 14 14 C 1.46495 * 119.99943 * 180.02562 * 2 1 3 15 15 H 1.09001 * 109.47508 * 180.02562 * 14 2 1 16 16 C 1.53002 * 109.47236 * 299.99704 * 14 2 1 17 17 N 1.46494 * 109.47415 * 305.00410 * 16 14 2 18 18 C 1.36937 * 120.00152 * 179.97438 * 17 16 14 19 19 H 1.07992 * 119.99846 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99719 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99628 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00379 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46948 * 90.00036 * 22 20 18 24 24 H 1.48499 * 109.47307 * 210.00084 * 22 20 18 25 25 H 1.48502 * 109.46796 * 330.00337 * 22 20 18 26 26 C 1.53003 * 109.47250 * 60.00064 * 14 2 1 27 27 C 1.52996 * 117.49831 * 128.74537 * 26 14 2 28 28 C 1.52999 * 117.49827 * 60.08587 * 26 14 2 29 29 H 1.08998 * 109.47099 * 83.95568 * 1 2 3 30 30 H 1.08999 * 109.46991 * 203.95678 * 1 2 3 31 31 H 1.08996 * 109.47038 * 323.95401 * 1 2 3 32 32 H 1.07996 * 126.19081 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.46719 * 59.99929 * 10 9 8 34 34 H 1.08999 * 109.47118 * 180.02562 * 10 9 8 35 35 H 1.08997 * 109.46832 * 300.00147 * 10 9 8 36 36 H 1.09003 * 109.46810 * 60.00279 * 11 9 8 37 37 H 1.08999 * 109.47229 * 180.02562 * 11 9 8 38 38 H 1.09001 * 109.47695 * 300.00239 * 11 9 8 39 39 H 1.09000 * 109.46738 * 59.99698 * 12 9 8 40 40 H 1.08999 * 109.47190 * 179.97438 * 12 9 8 41 41 H 1.08995 * 109.46852 * 299.99989 * 12 9 8 42 42 H 1.09002 * 109.46783 * 65.00130 * 16 14 2 43 43 H 1.09000 * 109.47305 * 184.99881 * 16 14 2 44 44 H 0.97008 * 119.99857 * 359.97438 * 17 16 14 45 45 H 0.97009 * 119.99992 * 179.97438 * 21 20 18 46 46 H 1.09002 * 115.54901 * 274.41814 * 26 14 2 47 47 H 1.08995 * 117.50067 * 0.02562 * 27 26 14 48 48 H 1.09008 * 117.49521 * 145.02223 * 27 26 14 49 49 H 1.08997 * 117.49916 * 214.98155 * 28 26 14 50 50 H 1.08999 * 117.49730 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3526 1.1683 -0.0663 5 6 1.4017 2.4465 0.0806 6 7 0.0661 2.5960 0.0178 7 6 -0.1872 3.8755 0.1258 8 7 0.9902 4.5144 0.2556 9 6 1.1671 5.9609 0.4052 10 6 0.7784 6.3781 1.8250 11 6 2.6310 6.3249 0.1495 12 6 0.2766 6.6906 -0.6026 13 7 1.9356 3.6394 0.2261 14 6 2.1975 -1.2687 -0.0006 15 1 3.2691 -1.0696 0.0000 16 6 1.8279 -2.0715 1.2484 17 7 2.0706 -1.2574 2.4418 18 6 1.8103 -1.7698 3.6847 19 1 1.4264 -2.7742 3.7852 20 6 2.0408 -0.9985 4.8156 21 7 1.7910 -1.4912 6.0103 22 14 2.7068 0.7381 4.6420 23 1 1.5754 1.6928 4.5253 24 1 3.5202 1.0781 5.8370 25 1 3.5543 0.8238 3.4255 26 6 1.8279 -2.0705 -1.2502 27 6 2.9741 -2.6049 -2.1112 28 6 2.1227 -1.4347 -2.6102 29 1 -0.3633 0.1082 -1.0219 30 1 -0.3633 -0.9391 0.4173 31 1 -0.3633 0.8309 0.6047 32 1 -1.1642 4.3354 0.1130 33 1 1.4128 5.8582 2.5429 34 1 0.9095 7.4544 1.9362 35 1 -0.2645 6.1188 2.0072 36 1 2.9079 6.0277 -0.8620 37 1 2.7626 7.4011 0.2613 38 1 3.2654 5.8051 0.8675 39 1 -0.7663 6.4312 -0.4203 40 1 0.4078 7.7669 -0.4909 41 1 0.5535 6.3934 -1.6140 42 1 0.7742 -2.3469 1.2046 43 1 2.4376 -2.9739 1.2939 44 1 2.4158 -0.3553 2.3516 45 1 1.9525 -0.9523 6.8006 46 1 0.9323 -2.6860 -1.1659 47 1 3.9914 -2.3857 -1.7873 48 1 2.8323 -3.5720 -2.5938 49 1 1.4214 -1.6324 -3.4208 50 1 2.5796 -0.4451 -2.6147 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676250383.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:22 Heat of formation + Delta-G solvation = 90.037738 kcal Electronic energy + Delta-G solvation = -30667.019182 eV Core-core repulsion = 26732.595623 eV Total energy + Delta-G solvation = -3934.423559 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.59132 -41.21921 -38.79891 -38.22070 -36.81258 -35.86286 -33.83463 -33.39560 -32.11462 -30.41380 -28.54291 -28.45211 -27.83247 -26.42735 -25.17129 -24.02189 -23.28824 -22.96182 -21.72240 -21.13944 -20.57450 -19.68672 -18.46391 -17.94138 -17.73080 -17.33291 -16.79766 -16.65259 -16.06357 -16.00674 -15.59915 -15.17448 -15.11799 -14.90871 -14.85942 -14.75815 -14.14650 -14.02633 -13.64786 -13.60460 -13.38243 -13.35659 -13.24190 -13.06076 -12.83874 -12.77166 -12.74379 -12.44733 -12.40597 -12.33134 -12.17190 -12.04234 -11.92342 -11.61572 -11.45829 -11.22716 -11.19518 -11.09481 -10.94021 -10.61344 -9.67833 -9.36314 -8.12178 -5.41527 0.27425 1.06384 1.13662 1.16977 1.21620 1.31133 1.79804 2.19038 2.33787 2.88260 3.05146 3.19916 3.21421 3.35569 3.60802 3.68190 3.73174 3.81869 3.83645 3.96572 4.08717 4.18602 4.36235 4.43379 4.48332 4.51431 4.53226 4.56354 4.63149 4.73598 4.75236 4.77599 4.79983 4.84814 4.90727 4.97687 5.02118 5.04499 5.09430 5.15358 5.20240 5.26687 5.27989 5.39895 5.49391 5.69171 5.73347 6.13345 6.20073 6.81058 6.98034 7.07390 7.75508 7.93513 9.09665 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008992 B = 0.004904 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.065243 B = 5708.222635 C = 7914.859589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.571 5.571 3 C 0.599 3.401 4 O -0.572 6.572 5 C 0.116 3.884 6 N -0.489 5.489 7 C 0.196 3.804 8 N -0.288 5.288 9 C 0.155 3.845 10 C -0.159 4.159 11 C -0.148 4.148 12 C -0.151 4.151 13 N -0.280 5.280 14 C 0.165 3.835 15 H 0.073 0.927 16 C 0.150 3.850 17 N -0.759 5.759 18 C -0.220 4.220 19 H 0.075 0.925 20 C -0.046 4.046 21 N -0.973 5.973 22 Si 0.931 3.069 23 H -0.285 1.285 24 H -0.285 1.285 25 H -0.285 1.285 26 C -0.162 4.162 27 C -0.161 4.161 28 C -0.162 4.162 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.274 0.726 33 H 0.035 0.965 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.112 0.888 38 H 0.042 0.958 39 H 0.091 0.909 40 H 0.115 0.885 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.046 0.954 44 H 0.356 0.644 45 H 0.259 0.741 46 H 0.131 0.869 47 H 0.082 0.918 48 H 0.124 0.876 49 H 0.119 0.881 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.574 17.647 -20.393 28.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.301 5.301 3 C 0.384 3.616 4 O -0.450 6.450 5 C -0.163 4.163 6 N -0.216 5.216 7 C -0.098 4.098 8 N -0.084 5.084 9 C 0.075 3.925 10 C -0.217 4.217 11 C -0.206 4.206 12 C -0.209 4.209 13 N -0.120 5.120 14 C 0.062 3.938 15 H 0.091 0.909 16 C 0.023 3.977 17 N -0.403 5.403 18 C -0.351 4.351 19 H 0.093 0.907 20 C -0.238 4.238 21 N -0.624 5.624 22 Si 0.762 3.238 23 H -0.212 1.212 24 H -0.211 1.211 25 H -0.212 1.212 26 C -0.181 4.181 27 C -0.198 4.198 28 C -0.199 4.199 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.289 0.711 33 H 0.054 0.946 34 H 0.136 0.864 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.131 0.869 38 H 0.062 0.938 39 H 0.110 0.890 40 H 0.134 0.866 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.188 0.812 45 H 0.068 0.932 46 H 0.149 0.851 47 H 0.101 0.899 48 H 0.142 0.858 49 H 0.137 0.863 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.554 17.309 -20.266 27.701 hybrid contribution 0.720 1.045 0.740 1.469 sum -6.834 18.354 -19.526 27.655 Atomic orbital electron populations 1.22193 0.76497 1.04048 1.03188 1.47544 1.08918 1.03867 1.69770 1.16794 0.85473 0.82425 0.76884 1.90749 1.14488 1.87152 1.52602 1.23427 0.89510 0.93087 1.10247 1.71406 1.11927 1.17035 1.21185 1.27416 0.95215 0.87668 0.99485 1.48204 1.03863 1.09376 1.46993 1.21698 0.99890 0.71236 0.99710 1.22322 1.02841 1.04625 0.91941 1.22011 0.92500 1.03960 1.02110 1.22275 0.99543 1.02333 0.96705 1.74203 1.19705 0.99124 1.18997 1.20927 0.96314 0.82077 0.94491 0.90858 1.21165 0.99470 0.93211 0.83846 1.42773 1.79767 1.15200 1.02585 1.19111 1.33836 0.98940 0.83210 0.90729 1.25109 1.02975 1.00566 0.95142 1.69803 1.57061 1.38125 0.97438 0.85774 0.78378 0.83189 0.76486 1.21216 1.21139 1.21164 1.22432 1.02320 1.03443 0.89923 1.23085 0.95143 0.99253 1.02309 1.22808 1.03684 0.96824 0.96581 0.90647 0.90767 0.89305 0.71067 0.94569 0.86391 0.89902 0.92631 0.86912 0.93849 0.88983 0.86644 0.92039 0.93272 0.93623 0.81210 0.93220 0.85067 0.89919 0.85802 0.86317 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.49 8.93 127.77 1.14 3.63 16 2 N -0.57 -20.81 2.12 -825.98 -1.76 -22.57 16 3 C 0.60 25.24 7.39 86.79 0.64 25.89 16 4 O -0.57 -28.01 16.42 -3.91 -0.06 -28.07 16 5 C 0.12 4.32 7.64 137.13 1.05 5.37 16 6 N -0.49 -14.39 7.90 -193.04 -1.53 -15.92 16 7 C 0.20 4.02 11.71 180.30 2.11 6.13 16 8 N -0.29 -6.79 3.17 -311.58 -0.99 -7.78 16 9 C 0.15 2.20 1.23 3.60 0.00 2.20 16 10 C -0.16 -1.90 8.72 71.98 0.63 -1.28 16 11 C -0.15 -2.43 8.04 71.98 0.58 -1.85 16 12 C -0.15 -0.83 8.28 71.98 0.60 -0.24 16 13 N -0.28 -9.83 11.10 -52.44 -0.58 -10.41 16 14 C 0.16 5.88 2.37 44.99 0.11 5.99 16 15 H 0.07 3.04 6.66 -2.39 -0.02 3.03 16 16 C 0.15 6.07 5.50 86.38 0.48 6.55 16 17 N -0.76 -39.50 5.24 -343.47 -1.80 -41.30 16 18 C -0.22 -13.22 10.47 84.03 0.88 -12.34 16 19 H 0.07 4.70 8.06 -2.91 -0.02 4.67 16 20 C -0.05 -2.86 5.50 84.86 0.47 -2.40 16 21 N -0.97 -64.32 13.97 21.65 0.30 -64.02 16 22 Si 0.93 51.91 27.74 68.60 1.90 53.82 16 23 H -0.29 -15.60 7.11 99.48 0.71 -14.89 16 24 H -0.29 -15.54 7.11 99.48 0.71 -14.83 16 25 H -0.28 -16.33 6.52 99.48 0.65 -15.68 16 26 C -0.16 -4.19 4.83 -10.79 -0.05 -4.24 16 27 C -0.16 -3.64 10.18 30.62 0.31 -3.33 16 28 C -0.16 -3.81 10.13 30.62 0.31 -3.50 16 29 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 2.17 6.54 -2.39 -0.02 2.15 16 31 H 0.09 2.92 5.34 -2.39 -0.01 2.91 16 32 H 0.27 2.07 7.53 -2.91 -0.02 2.05 16 33 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.04 1.00 8.02 -2.39 -0.02 0.98 16 39 H 0.09 0.15 7.34 -2.39 -0.02 0.13 16 40 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.05 1.87 6.87 -2.39 -0.02 1.85 16 43 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.36 19.50 4.93 -92.70 -0.46 19.04 16 45 H 0.26 16.32 8.31 -92.70 -0.77 15.55 16 46 H 0.13 2.88 8.11 -2.39 -0.02 2.86 16 47 H 0.08 2.11 8.05 -2.39 -0.02 2.09 16 48 H 0.12 2.13 8.14 -2.38 -0.02 2.11 16 49 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 50 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -88.50 402.78 5.16 -83.34 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.42 Total: 26.33 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 9.25 Total: 26.58 kcal Atomic # 7 Polarization: -155.64 SS G_CDS: -6.35 Total: -161.99 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.06 Total: -28.07 kcal Atomic # 14 Polarization: 51.91 SS G_CDS: 1.90 Total: 53.82 kcal Total: -88.50 5.16 -83.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676250383.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.376 kcal (2) G-P(sol) polarization free energy of solvation -88.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds