Wall clock time and date at job start Tue Mar 31 2020 18:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47200 * 2 1 4 4 H 1.09000 * 109.47154 * 54.99779 * 3 2 1 5 5 C 1.52995 * 109.47310 * 295.00000 * 3 2 1 6 6 N 1.46498 * 109.47103 * 174.99654 * 3 2 1 7 7 N 1.40069 * 126.06030 * 60.02451 * 6 3 2 8 8 C 1.30839 * 108.36343 * 179.71451 * 7 6 3 9 9 C 1.40228 * 108.34505 * 0.41097 * 8 7 6 10 10 N 1.40840 * 126.07957 * 179.84939 * 9 8 7 11 11 C 1.34778 * 119.99937 * 359.69088 * 10 9 8 12 12 O 1.21602 * 119.99748 * 5.03094 * 11 10 9 13 13 N 1.34779 * 120.00024 * 185.03367 * 11 10 9 14 14 C 1.46961 * 120.59233 * 174.90786 * 13 11 10 15 15 C 1.53365 * 108.64187 * 235.20530 * 14 13 11 16 16 N 1.46974 * 108.63233 * 310.58062 * 15 14 13 17 17 C 1.36938 * 120.59201 * 235.20035 * 16 15 14 18 18 H 1.07999 * 119.99951 * 25.66750 * 17 16 15 19 19 C 1.38811 * 119.99412 * 205.39305 * 17 16 15 20 20 N 1.31622 * 119.99760 * 217.58753 * 19 17 16 21 21 Si 1.86796 * 120.00332 * 37.59383 * 19 17 16 22 22 H 1.48493 * 109.47529 * 95.27034 * 21 19 17 23 23 H 1.48497 * 109.47078 * 215.27373 * 21 19 17 24 24 H 1.48504 * 109.46982 * 335.27290 * 21 19 17 25 25 C 1.46963 * 118.80939 * 55.47408 * 16 15 14 26 26 C 1.46961 * 120.59623 * 354.89013 * 13 11 10 27 27 C 1.35733 * 107.84692 * 359.58634 * 9 8 7 28 28 C 1.50702 * 126.21981 * 180.22122 * 27 9 8 29 29 H 1.09005 * 109.47262 * 60.00128 * 1 2 3 30 30 H 1.09006 * 109.47229 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47704 * 299.99924 * 1 2 3 32 32 H 1.09001 * 109.47487 * 239.99567 * 2 1 3 33 33 H 1.09005 * 109.47262 * 119.99872 * 2 1 3 34 34 H 1.08994 * 109.47648 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.46831 * 299.99976 * 5 3 2 36 36 H 1.09000 * 109.47142 * 59.99786 * 5 3 2 37 37 H 1.08005 * 125.82863 * 180.25366 * 8 7 6 38 38 H 0.97003 * 120.00457 * 179.68757 * 10 9 8 39 39 H 1.09002 * 109.60642 * 115.45702 * 14 13 11 40 40 H 1.09005 * 109.61476 * 354.95180 * 14 13 11 41 41 H 1.08992 * 109.61567 * 190.83370 * 15 14 13 42 42 H 1.08999 * 109.75048 * 70.40080 * 15 14 13 43 43 H 0.96995 * 119.99866 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.61393 * 64.27018 * 25 16 15 45 45 H 1.08998 * 109.60994 * 184.77755 * 25 16 15 46 46 H 1.08996 * 109.61005 * 244.54107 * 26 13 11 47 47 H 1.09006 * 109.60901 * 4.87746 * 26 13 11 48 48 H 1.09005 * 109.46800 * 90.02214 * 28 27 9 49 49 H 1.08992 * 109.47162 * 210.02554 * 28 27 9 50 50 H 1.09000 * 109.47095 * 330.02468 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 7 3.5000 1.4442 0.1205 7 7 4.4017 0.8512 -0.7724 8 6 5.6161 1.0666 -0.3357 9 6 5.5327 1.7976 0.8580 10 7 6.6188 2.2281 1.6446 11 6 7.8799 1.9358 1.2698 12 8 8.0853 1.3809 0.2074 13 7 8.9135 2.2584 2.0725 14 6 10.2825 1.8478 1.7306 15 6 10.8677 1.0620 2.9105 16 7 10.6458 1.8311 4.1431 17 6 11.6959 2.1588 4.9586 18 1 12.6922 2.2399 4.5498 19 6 11.4787 2.3924 6.3096 20 7 12.1506 3.3390 6.9301 21 14 10.2332 1.3633 7.2471 22 1 10.9285 0.2382 7.9222 23 1 9.5573 2.2088 8.2636 24 1 9.2235 0.8246 6.3006 25 6 9.2760 2.2367 4.4878 26 6 8.6916 3.0274 3.3050 27 6 4.2194 2.0217 1.1177 28 6 3.6608 2.7739 2.2980 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.9989 3.1540 -1.3075 35 1 2.0699 1.5875 -2.1491 36 1 0.5489 2.1253 -1.3969 37 1 6.5272 0.7355 -0.8119 38 1 6.4592 2.7350 2.4561 39 1 10.8926 2.7309 1.5406 40 1 10.2640 1.2152 0.8431 41 1 11.9369 0.9155 2.7582 42 1 10.3734 0.0937 2.9895 43 1 11.9991 3.5020 7.8742 44 1 8.6684 1.3514 4.6754 45 1 9.2938 2.8662 5.3775 46 1 9.1884 3.9945 3.2272 47 1 7.6224 3.1765 3.4557 48 1 3.5688 3.8303 2.0451 49 1 2.6791 2.3743 2.5520 50 1 4.3305 2.6614 3.1506 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677213352.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:58 Heat of formation + Delta-G solvation = 90.355903 kcal Electronic energy + Delta-G solvation = -29720.699367 eV Core-core repulsion = 25786.289604 eV Total energy + Delta-G solvation = -3934.409762 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.50130 -39.93308 -37.32944 -36.59626 -34.61657 -33.91366 -32.54518 -31.65252 -30.85993 -30.45182 -28.71239 -27.37078 -26.47190 -24.96631 -23.63559 -23.29565 -22.46337 -21.48682 -20.08700 -20.03521 -18.91959 -17.94814 -17.06070 -16.49058 -16.15623 -15.69959 -15.39353 -15.29268 -14.90430 -14.56533 -14.33969 -14.27154 -13.91317 -13.75597 -13.65988 -13.31927 -13.13573 -13.06898 -12.82843 -12.70220 -12.56248 -12.40921 -12.20905 -12.18527 -11.94877 -11.89886 -11.43300 -11.22656 -11.06161 -10.85359 -10.61860 -10.59002 -10.51538 -10.39076 -10.20397 -9.72128 -9.51822 -9.20611 -8.78004 -8.28721 -7.53311 -7.05090 -6.13148 -3.30893 1.74374 2.26223 2.76211 2.87726 3.31792 3.44884 3.50682 3.58300 4.01889 4.14423 4.43474 4.46863 4.48143 4.61689 4.78335 4.80417 4.83020 4.93681 5.09843 5.12871 5.18603 5.21424 5.28429 5.43022 5.46249 5.47810 5.56584 5.57970 5.58425 5.63001 5.72123 5.77017 5.87277 5.87872 5.95114 6.05290 6.06058 6.23516 6.32737 6.46837 6.55537 6.70854 6.85744 6.92255 7.03979 7.17363 7.74201 7.83310 8.09723 8.21111 8.75093 8.84523 9.63303 10.03040 11.01044 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019610 B = 0.002610 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.468112 B =10723.433637 C =11514.651168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.133 4.133 3 C 0.167 3.833 4 H 0.098 0.902 5 C -0.162 4.162 6 N -0.368 5.368 7 N -0.285 5.285 8 C 0.053 3.947 9 C 0.033 3.967 10 N -0.662 5.662 11 C 0.710 3.290 12 O -0.589 6.589 13 N -0.613 5.613 14 C 0.115 3.885 15 C 0.131 3.869 16 N -0.599 5.599 17 C -0.274 4.274 18 H 0.084 0.916 19 C 0.038 3.962 20 N -0.878 5.878 21 Si 0.833 3.167 22 H -0.293 1.293 23 H -0.294 1.294 24 H -0.258 1.258 25 C 0.132 3.868 26 C 0.091 3.909 27 C 0.030 3.970 28 C -0.086 4.086 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.206 0.794 38 H 0.403 0.597 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.026 0.974 43 H 0.263 0.737 44 H 0.033 0.967 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.062 0.938 48 H 0.077 0.923 49 H 0.070 0.930 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.885 -0.760 -11.557 25.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.171 4.171 3 C 0.065 3.935 4 H 0.116 0.884 5 C -0.220 4.220 6 N -0.155 5.155 7 N -0.106 5.106 8 C -0.134 4.134 9 C -0.072 4.072 10 N -0.312 5.312 11 C 0.412 3.588 12 O -0.468 6.468 13 N -0.349 5.349 14 C -0.009 4.009 15 C 0.004 3.996 16 N -0.322 5.322 17 C -0.401 4.401 18 H 0.101 0.899 19 C -0.163 4.163 20 N -0.517 5.517 21 Si 0.660 3.340 22 H -0.220 1.220 23 H -0.221 1.221 24 H -0.183 1.183 25 C 0.005 3.995 26 C -0.034 4.034 27 C -0.099 4.099 28 C -0.144 4.144 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.222 0.778 38 H 0.241 0.759 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.051 0.949 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.080 0.920 48 H 0.096 0.904 49 H 0.089 0.911 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.410 -1.576 -13.048 26.847 hybrid contribution -0.150 0.082 2.037 2.045 sum -23.561 -1.494 -11.011 26.049 Atomic orbital electron populations 1.21805 0.94556 1.02423 1.02106 1.21873 0.96235 0.95225 1.03762 1.21240 0.74435 0.97849 0.99948 0.88437 1.22174 1.01849 1.00972 0.96977 1.48411 1.05591 1.43436 1.18044 1.77304 0.98562 1.19624 1.15109 1.24475 0.96324 0.98240 0.94348 1.17203 0.85643 1.07715 0.96627 1.42115 1.03008 1.58740 1.27382 1.15682 0.79997 0.79555 0.83606 1.90742 1.83589 1.49434 1.23049 1.47175 1.06748 1.57392 1.23541 1.22123 0.79809 0.99824 0.99165 1.21392 0.99476 0.92694 0.86016 1.44284 1.03171 1.61340 1.23410 1.18786 0.89534 1.42908 0.88863 0.89852 1.25184 0.96923 0.97650 0.96565 1.70130 1.43924 1.26574 1.11100 0.87645 0.82695 0.82926 0.80746 1.22023 1.22067 1.18262 1.21775 0.86484 0.96452 0.94753 1.22493 0.98989 0.96186 0.85717 1.20297 0.90410 1.04079 0.95064 1.20344 1.01415 0.99201 0.93480 0.92069 0.92055 0.92514 0.90424 0.91435 0.92141 0.91028 0.90660 0.77758 0.75891 0.91522 0.89431 0.90599 0.95555 0.92723 0.94946 0.90439 0.90615 0.92033 0.90427 0.91081 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.67 37.15 0.36 -0.41 16 2 C -0.13 -1.00 5.66 -26.73 -0.15 -1.16 16 3 C 0.17 1.34 3.12 -67.93 -0.21 1.13 16 4 H 0.10 0.59 6.71 -51.93 -0.35 0.24 16 5 C -0.16 -1.17 9.21 37.15 0.34 -0.82 16 6 N -0.37 -4.29 3.30 -50.38 -0.17 -4.46 16 7 N -0.28 -4.12 12.42 30.70 0.38 -3.74 16 8 C 0.05 0.83 10.84 -17.23 -0.19 0.65 16 9 C 0.03 0.48 6.86 -83.86 -0.58 -0.10 16 10 N -0.66 -9.40 5.39 -14.39 -0.08 -9.47 16 11 C 0.71 12.06 8.26 -86.91 -0.72 11.34 16 12 O -0.59 -11.28 12.94 5.28 0.07 -11.21 16 13 N -0.61 -10.35 2.95 -177.94 -0.52 -10.88 16 14 C 0.11 1.97 6.58 -3.60 -0.02 1.95 16 15 C 0.13 2.51 6.67 -3.59 -0.02 2.48 16 16 N -0.60 -13.44 2.73 -171.77 -0.47 -13.91 16 17 C -0.27 -7.22 9.85 -15.06 -0.15 -7.37 16 18 H 0.08 2.35 8.05 -52.49 -0.42 1.93 16 19 C 0.04 1.04 4.81 -17.43 -0.08 0.96 16 20 N -0.88 -25.41 13.97 55.49 0.78 -24.63 16 21 Si 0.83 20.21 26.42 -169.99 -4.49 15.72 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.26 -5.94 4.96 56.52 0.28 -5.66 16 25 C 0.13 2.64 4.57 -3.37 -0.02 2.63 16 26 C 0.09 1.46 6.61 -3.37 -0.02 1.44 16 27 C 0.03 0.35 6.98 -81.71 -0.57 -0.22 16 28 C -0.09 -0.66 9.78 36.01 0.35 -0.30 16 29 H 0.06 0.27 6.57 -51.93 -0.34 -0.07 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.37 6.56 -51.93 -0.34 0.03 16 37 H 0.21 3.43 5.93 -52.48 -0.31 3.12 16 38 H 0.40 4.75 5.54 -40.82 -0.23 4.52 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.09 1.46 7.02 -51.93 -0.36 1.10 16 41 H 0.08 1.40 7.92 -51.93 -0.41 0.99 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.03 0.66 6.79 -51.93 -0.35 0.31 16 45 H 0.08 1.65 5.49 -51.93 -0.29 1.36 16 46 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.06 0.77 5.55 -51.93 -0.29 0.48 16 48 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.07 0.42 7.13 -51.93 -0.37 0.05 16 50 H 0.08 0.57 7.61 -51.93 -0.40 0.18 16 LS Contribution 385.34 15.07 5.81 5.81 Total: -1.00 -32.44 385.34 -8.31 -40.75 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.94 Total: 3.82 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: -1.68 Total: 12.20 kcal Atomic # 7 Polarization: -67.01 SS G_CDS: -0.08 Total: -67.09 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.07 Total: -11.21 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.49 Total: 15.72 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.44 -8.31 -40.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677213352.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.107 kcal (2) G-P(sol) polarization free energy of solvation -32.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds