Wall clock time and date at job start Tue Mar 31 2020 18:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47200 * 2 1 4 4 H 1.09000 * 109.47154 * 54.99779 * 3 2 1 5 5 C 1.52995 * 109.47310 * 295.00000 * 3 2 1 6 6 N 1.46498 * 109.47103 * 174.99654 * 3 2 1 7 7 N 1.40069 * 126.06030 * 60.02451 * 6 3 2 8 8 C 1.30839 * 108.36343 * 179.71451 * 7 6 3 9 9 C 1.40228 * 108.34505 * 0.41097 * 8 7 6 10 10 N 1.40840 * 126.07957 * 179.84939 * 9 8 7 11 11 C 1.34778 * 119.99937 * 359.69088 * 10 9 8 12 12 O 1.21602 * 119.99748 * 5.03094 * 11 10 9 13 13 N 1.34779 * 120.00024 * 185.03367 * 11 10 9 14 14 C 1.46961 * 120.59233 * 174.90786 * 13 11 10 15 15 C 1.53365 * 108.64187 * 235.20530 * 14 13 11 16 16 N 1.46974 * 108.63233 * 310.58062 * 15 14 13 17 17 C 1.36938 * 120.59201 * 235.20035 * 16 15 14 18 18 H 1.07999 * 119.99951 * 25.66750 * 17 16 15 19 19 C 1.38811 * 119.99412 * 205.39305 * 17 16 15 20 20 N 1.31622 * 119.99760 * 217.58753 * 19 17 16 21 21 Si 1.86796 * 120.00332 * 37.59383 * 19 17 16 22 22 H 1.48493 * 109.47529 * 95.27034 * 21 19 17 23 23 H 1.48497 * 109.47078 * 215.27373 * 21 19 17 24 24 H 1.48504 * 109.46982 * 335.27290 * 21 19 17 25 25 C 1.46963 * 118.80939 * 55.47408 * 16 15 14 26 26 C 1.46961 * 120.59623 * 354.89013 * 13 11 10 27 27 C 1.35733 * 107.84692 * 359.58634 * 9 8 7 28 28 C 1.50702 * 126.21981 * 180.22122 * 27 9 8 29 29 H 1.09005 * 109.47262 * 60.00128 * 1 2 3 30 30 H 1.09006 * 109.47229 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47704 * 299.99924 * 1 2 3 32 32 H 1.09001 * 109.47487 * 239.99567 * 2 1 3 33 33 H 1.09005 * 109.47262 * 119.99872 * 2 1 3 34 34 H 1.08994 * 109.47648 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.46831 * 299.99976 * 5 3 2 36 36 H 1.09000 * 109.47142 * 59.99786 * 5 3 2 37 37 H 1.08005 * 125.82863 * 180.25366 * 8 7 6 38 38 H 0.97003 * 120.00457 * 179.68757 * 10 9 8 39 39 H 1.09002 * 109.60642 * 115.45702 * 14 13 11 40 40 H 1.09005 * 109.61476 * 354.95180 * 14 13 11 41 41 H 1.08992 * 109.61567 * 190.83370 * 15 14 13 42 42 H 1.08999 * 109.75048 * 70.40080 * 15 14 13 43 43 H 0.96995 * 119.99866 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.61393 * 64.27018 * 25 16 15 45 45 H 1.08998 * 109.60994 * 184.77755 * 25 16 15 46 46 H 1.08996 * 109.61005 * 244.54107 * 26 13 11 47 47 H 1.09006 * 109.60901 * 4.87746 * 26 13 11 48 48 H 1.09005 * 109.46800 * 90.02214 * 28 27 9 49 49 H 1.08992 * 109.47162 * 210.02554 * 28 27 9 50 50 H 1.09000 * 109.47095 * 330.02468 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 7 3.5000 1.4442 0.1205 7 7 4.4017 0.8512 -0.7724 8 6 5.6161 1.0666 -0.3357 9 6 5.5327 1.7976 0.8580 10 7 6.6188 2.2281 1.6446 11 6 7.8799 1.9358 1.2698 12 8 8.0853 1.3809 0.2074 13 7 8.9135 2.2584 2.0725 14 6 10.2825 1.8478 1.7306 15 6 10.8677 1.0620 2.9105 16 7 10.6458 1.8311 4.1431 17 6 11.6959 2.1588 4.9586 18 1 12.6922 2.2399 4.5498 19 6 11.4787 2.3924 6.3096 20 7 12.1506 3.3390 6.9301 21 14 10.2332 1.3633 7.2471 22 1 10.9285 0.2382 7.9222 23 1 9.5573 2.2088 8.2636 24 1 9.2235 0.8246 6.3006 25 6 9.2760 2.2367 4.4878 26 6 8.6916 3.0274 3.3050 27 6 4.2194 2.0217 1.1177 28 6 3.6608 2.7739 2.2980 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.9989 3.1540 -1.3075 35 1 2.0699 1.5875 -2.1491 36 1 0.5489 2.1253 -1.3969 37 1 6.5272 0.7355 -0.8119 38 1 6.4592 2.7350 2.4561 39 1 10.8926 2.7309 1.5406 40 1 10.2640 1.2152 0.8431 41 1 11.9369 0.9155 2.7582 42 1 10.3734 0.0937 2.9895 43 1 11.9991 3.5020 7.8742 44 1 8.6684 1.3514 4.6754 45 1 9.2938 2.8662 5.3775 46 1 9.1884 3.9945 3.2272 47 1 7.6224 3.1765 3.4557 48 1 3.5688 3.8303 2.0451 49 1 2.6791 2.3743 2.5520 50 1 4.3305 2.6614 3.1506 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677213352.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:57 Heat of formation + Delta-G solvation = 69.767368 kcal Electronic energy + Delta-G solvation = -29721.592152 eV Core-core repulsion = 25786.289604 eV Total energy + Delta-G solvation = -3935.302548 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.51404 -41.20152 -38.76495 -37.39558 -35.84974 -35.48555 -33.51011 -33.35442 -32.18388 -31.37443 -29.53961 -28.76818 -27.52268 -25.64945 -25.26529 -24.79934 -23.45855 -22.73129 -21.27248 -21.05213 -20.15672 -19.27609 -18.26892 -17.96010 -17.20923 -16.98838 -16.71217 -16.18389 -16.11723 -15.98235 -15.74090 -15.36247 -15.28008 -14.97023 -14.76920 -14.50598 -14.24915 -14.11303 -13.87765 -13.81164 -13.50500 -13.43087 -13.26363 -13.07057 -12.75439 -12.72584 -12.54508 -12.50820 -12.29356 -12.12126 -12.06959 -11.89963 -11.84631 -11.60324 -11.50374 -11.38828 -11.08698 -10.65716 -10.14233 -9.89907 -8.92611 -8.52821 -8.20927 -5.35666 0.79809 1.32837 1.37218 1.50058 1.55654 1.59720 1.72870 2.34723 2.46248 2.82837 2.95555 3.39009 3.48477 3.71901 3.84972 3.95893 4.09462 4.11314 4.14703 4.17966 4.22686 4.40497 4.41619 4.46053 4.52167 4.59821 4.61683 4.66347 4.71540 4.76970 4.79890 4.87877 4.89268 4.99517 5.02422 5.04369 5.08852 5.11232 5.18481 5.20738 5.32400 5.40963 5.50090 5.83523 5.86936 5.93260 6.13685 6.17130 6.69874 6.89245 6.92401 7.48778 7.64390 8.06688 8.96757 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019610 B = 0.002610 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.468112 B =10723.433637 C =11514.651168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.156 3.844 4 H 0.130 0.870 5 C -0.157 4.157 6 N -0.361 5.361 7 N -0.308 5.308 8 C 0.031 3.969 9 C -0.002 4.002 10 N -0.647 5.647 11 C 0.706 3.294 12 O -0.615 6.615 13 N -0.616 5.616 14 C 0.125 3.875 15 C 0.132 3.868 16 N -0.611 5.611 17 C -0.264 4.264 18 H 0.052 0.948 19 C -0.011 4.011 20 N -0.925 5.925 21 Si 0.898 3.102 22 H -0.308 1.308 23 H -0.291 1.291 24 H -0.237 1.237 25 C 0.127 3.873 26 C 0.102 3.898 27 C 0.052 3.948 28 C -0.089 4.089 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.104 0.896 37 H 0.184 0.816 38 H 0.415 0.585 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.028 0.972 43 H 0.263 0.737 44 H 0.036 0.964 45 H 0.065 0.935 46 H 0.074 0.926 47 H 0.104 0.896 48 H 0.097 0.903 49 H 0.094 0.906 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.976 -0.258 -11.122 29.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.056 3.944 4 H 0.147 0.853 5 C -0.215 4.215 6 N -0.147 5.147 7 N -0.130 5.130 8 C -0.156 4.156 9 C -0.107 4.107 10 N -0.298 5.298 11 C 0.408 3.592 12 O -0.496 6.496 13 N -0.352 5.352 14 C 0.000 4.000 15 C 0.006 3.994 16 N -0.336 5.336 17 C -0.392 4.392 18 H 0.070 0.930 19 C -0.209 4.209 20 N -0.568 5.568 21 Si 0.725 3.275 22 H -0.237 1.237 23 H -0.218 1.218 24 H -0.160 1.160 25 C 0.001 3.999 26 C -0.023 4.023 27 C -0.078 4.078 28 C -0.147 4.147 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.122 0.878 37 H 0.200 0.800 38 H 0.256 0.744 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.046 0.954 43 H 0.072 0.928 44 H 0.054 0.946 45 H 0.083 0.917 46 H 0.092 0.908 47 H 0.122 0.878 48 H 0.116 0.884 49 H 0.113 0.887 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -27.578 -1.088 -12.643 30.357 hybrid contribution 1.044 -0.090 1.793 2.077 sum -26.534 -1.178 -10.850 28.691 Atomic orbital electron populations 1.21782 0.92251 1.02949 1.03350 1.21816 0.98120 0.94564 1.02147 1.21714 0.72383 0.98635 1.01670 0.85250 1.22152 1.03573 1.00138 0.95622 1.48864 1.06714 1.41917 1.17208 1.77247 0.98723 1.20716 1.16345 1.24238 0.96180 0.99612 0.95521 1.17367 0.86683 1.09637 0.96980 1.41843 1.01991 1.58380 1.27619 1.15786 0.80695 0.79396 0.83275 1.90743 1.84110 1.50531 1.24235 1.47160 1.06538 1.57639 1.23829 1.21918 0.80247 0.99601 0.98202 1.21458 0.99849 0.92682 0.85423 1.44398 1.03369 1.62191 1.23601 1.18709 0.89614 1.41484 0.89421 0.93013 1.25658 0.99526 0.98419 0.97335 1.70206 1.46883 1.28425 1.11303 0.86626 0.80871 0.80481 0.79550 1.23678 1.21783 1.16022 1.21835 0.85228 0.96757 0.96078 1.22364 1.01336 0.94946 0.83611 1.20961 0.89482 1.02034 0.95299 1.20588 1.02635 0.99753 0.91713 0.91098 0.92006 0.90916 0.92615 0.92553 0.92471 0.93203 0.87760 0.79954 0.74434 0.91508 0.88977 0.90620 0.95388 0.92807 0.94618 0.91686 0.90795 0.87839 0.88449 0.88702 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.67 71.98 0.70 -0.33 16 2 C -0.13 -1.69 5.66 30.59 0.17 -1.51 16 3 C 0.16 2.06 3.12 44.99 0.14 2.20 16 4 H 0.13 0.93 6.71 -2.39 -0.02 0.91 16 5 C -0.16 -1.88 9.21 71.98 0.66 -1.22 16 6 N -0.36 -7.73 3.30 -313.31 -1.03 -8.76 16 7 N -0.31 -8.93 12.42 -56.78 -0.71 -9.64 16 8 C 0.03 0.97 10.84 85.32 0.92 1.89 16 9 C 0.00 -0.05 6.86 37.59 0.26 0.20 16 10 N -0.65 -17.00 5.39 -317.70 -1.71 -18.71 16 11 C 0.71 23.17 8.26 179.05 1.48 24.65 16 12 O -0.62 -23.67 12.94 -4.04 -0.05 -23.72 16 13 N -0.62 -19.84 2.95 -835.14 -2.46 -22.30 16 14 C 0.12 4.20 6.58 86.41 0.57 4.77 16 15 C 0.13 5.00 6.67 86.41 0.58 5.57 16 16 N -0.61 -27.09 2.73 -697.36 -1.90 -28.99 16 17 C -0.26 -14.09 9.85 84.03 0.83 -13.26 16 18 H 0.05 3.03 8.05 -2.91 -0.02 3.01 16 19 C -0.01 -0.63 4.81 84.86 0.41 -0.22 16 20 N -0.93 -54.67 13.97 21.65 0.30 -54.37 16 21 Si 0.90 41.95 26.42 68.60 1.81 43.76 16 22 H -0.31 -15.10 7.11 99.48 0.71 -14.39 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.24 -10.10 4.96 99.48 0.49 -9.61 16 25 C 0.13 4.83 4.57 86.56 0.40 5.22 16 26 C 0.10 3.02 6.61 86.56 0.57 3.59 16 27 C 0.05 1.07 6.98 41.36 0.29 1.36 16 28 C -0.09 -0.93 9.78 71.24 0.70 -0.23 16 29 H 0.07 0.38 6.57 -2.38 -0.02 0.36 16 30 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.10 0.64 6.56 -2.39 -0.02 0.62 16 37 H 0.18 6.50 5.93 -2.91 -0.02 6.48 16 38 H 0.42 8.31 5.54 -92.71 -0.51 7.80 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.09 3.04 7.02 -2.38 -0.02 3.03 16 41 H 0.08 2.82 7.92 -2.39 -0.02 2.81 16 42 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 44 H 0.04 1.35 6.79 -2.39 -0.02 1.34 16 45 H 0.06 2.65 5.49 -2.39 -0.01 2.63 16 46 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.10 2.18 5.55 -2.38 -0.01 2.17 16 48 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 49 H 0.09 0.59 7.13 -2.39 -0.02 0.57 16 50 H 0.09 0.83 7.61 -2.39 -0.02 0.81 16 Total: -1.00 -73.08 385.34 3.15 -69.94 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.23 Total: 20.10 kcal Atomic # 6 Polarization: 24.03 SS G_CDS: 8.67 Total: 32.70 kcal Atomic # 7 Polarization: -135.26 SS G_CDS: -7.51 Total: -142.77 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.05 Total: -23.72 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.81 Total: 43.76 kcal Total: -73.08 3.15 -69.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677213352.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.705 kcal (2) G-P(sol) polarization free energy of solvation -73.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds