Wall clock time and date at job start Tue Mar 31 2020 19:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46883 * 2 1 4 4 N 1.46496 * 109.47270 * 179.97438 * 3 2 1 5 5 C 1.34778 * 119.99763 * 90.00273 * 4 3 2 6 6 O 1.21281 * 120.00475 * 179.97438 * 5 4 3 7 7 C 1.50708 * 119.99883 * 0.02562 * 5 4 3 8 8 C 1.52998 * 109.46859 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.46732 * 180.02562 * 8 7 5 10 10 N 1.33249 * 125.52319 * 269.68643 * 9 8 7 11 11 C 1.30835 * 109.82450 * 179.85750 * 10 9 8 12 12 N 1.34422 * 108.07807 * 0.40502 * 11 10 9 13 13 H 0.97002 * 126.82318 * 179.78815 * 12 11 10 14 14 N 1.30709 * 125.53207 * 89.99750 * 9 8 7 15 15 C 1.46497 * 120.00663 * 270.00316 * 4 3 2 16 16 C 1.53041 * 109.46343 * 240.02875 * 15 4 3 17 17 C 1.53192 * 109.31163 * 178.59898 * 16 15 4 18 18 N 1.46927 * 108.76608 * 54.65540 * 17 16 15 19 19 C 1.36933 * 120.62954 * 126.40328 * 18 17 16 20 20 H 1.08000 * 120.00254 * 331.82646 * 19 18 17 21 21 C 1.38812 * 119.99857 * 151.82238 * 19 18 17 22 22 N 1.31624 * 120.00062 * 343.07815 * 21 19 18 23 23 Si 1.86805 * 119.99990 * 163.07378 * 21 19 18 24 24 H 1.48501 * 109.47171 * 90.00406 * 23 21 19 25 25 H 1.48505 * 109.47038 * 210.00477 * 23 21 19 26 26 H 1.48500 * 109.46884 * 330.00003 * 23 21 19 27 27 C 1.46921 * 118.73618 * 306.38074 * 18 17 16 28 28 C 1.53040 * 109.46015 * 119.97222 * 15 4 3 29 29 H 1.09007 * 109.46421 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46867 * 299.99374 * 1 2 3 31 31 H 1.08993 * 109.47083 * 59.99810 * 1 2 3 32 32 H 1.09005 * 109.47250 * 240.01008 * 2 1 3 33 33 H 1.08996 * 109.47811 * 120.00263 * 2 1 3 34 34 H 1.09004 * 109.46858 * 60.00620 * 3 2 1 35 35 H 1.08998 * 109.47570 * 300.00448 * 3 2 1 36 36 H 1.08998 * 109.46779 * 299.99262 * 7 5 4 37 37 H 1.08998 * 109.47180 * 59.99583 * 7 5 4 38 38 H 1.09005 * 109.47208 * 299.99616 * 8 7 5 39 39 H 1.08998 * 109.47646 * 59.99769 * 8 7 5 40 40 H 1.08004 * 125.95605 * 180.12910 * 11 10 9 41 41 H 1.09006 * 109.45660 * 359.97438 * 15 4 3 42 42 H 1.09001 * 109.49161 * 298.56422 * 16 15 4 43 43 H 1.09002 * 109.49775 * 58.65888 * 16 15 4 44 44 H 1.08997 * 109.59760 * 294.86606 * 17 16 15 45 45 H 1.09001 * 109.69808 * 174.50644 * 17 16 15 46 46 H 0.96994 * 119.99832 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.58933 * 293.82066 * 27 18 17 48 48 H 1.09007 * 109.70253 * 173.46450 * 27 18 17 49 49 H 1.09007 * 109.49681 * 301.33720 * 28 15 4 50 50 H 1.08995 * 109.50004 * 61.40453 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1793 1.4426 -1.1663 6 8 5.3921 1.4431 -1.1660 7 6 3.4262 1.4430 -2.4718 8 6 4.4209 1.4422 -3.6343 9 6 3.6678 1.4432 -4.9396 10 7 3.2850 0.3592 -5.6134 11 6 2.6516 0.7141 -6.7019 12 7 2.6248 2.0572 -6.7498 13 1 2.2253 2.6064 -7.4424 14 7 3.2893 2.5074 -5.5974 15 6 4.2370 1.4428 1.2695 16 6 5.1162 2.6929 1.3509 17 6 5.8533 2.7073 2.6937 18 7 6.5869 1.4432 2.8439 19 6 7.9283 1.4434 3.1189 20 1 8.5459 2.2681 2.7949 21 6 8.4944 0.3837 3.8142 22 7 7.7273 -0.4429 4.4928 23 14 10.3451 0.1308 3.7866 24 1 10.9633 0.8757 4.9128 25 1 10.6490 -1.3163 3.9241 26 1 10.8940 0.6318 2.5010 27 6 5.8537 0.1789 2.6938 28 6 5.1163 0.1929 1.3510 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5137 -0.8901 33 1 1.8935 -0.5138 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 1.9564 -0.8899 36 1 2.7994 0.5531 -2.5299 37 1 2.7998 2.3331 -2.5296 38 1 5.0482 2.3318 -3.5764 39 1 5.0470 0.5518 -3.5763 40 1 2.2284 0.0446 -7.4362 41 1 3.5282 1.4433 2.0977 42 1 5.8416 2.6809 0.5375 43 1 4.4919 3.5827 1.2692 44 1 5.1329 2.8103 3.5052 45 1 6.5541 3.5418 2.7192 46 1 8.1228 -1.1836 4.9784 47 1 5.1333 0.0757 3.5053 48 1 6.5533 -0.6567 2.7177 49 1 4.4921 -0.6970 1.2695 50 1 5.8414 0.2044 0.5373 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690134303.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:57 Heat of formation + Delta-G solvation = 63.951192 kcal Electronic energy + Delta-G solvation = -29871.784071 eV Core-core repulsion = 25936.229314 eV Total energy + Delta-G solvation = -3935.554757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.39693 -40.11674 -37.09568 -35.95193 -34.44583 -33.29462 -32.28160 -31.91482 -30.86253 -29.93385 -29.33330 -26.23972 -25.91135 -24.30547 -23.05249 -22.16119 -22.04954 -21.62320 -20.37512 -19.42243 -18.66700 -18.50865 -16.97743 -16.40853 -15.93074 -15.85162 -15.57151 -15.14124 -14.71060 -14.58567 -14.09384 -13.83733 -13.69616 -13.40176 -13.06364 -12.97967 -12.79828 -12.53054 -12.44625 -12.40479 -12.29935 -12.21906 -11.72549 -11.46074 -11.32398 -11.27060 -11.00611 -10.88923 -10.75050 -10.59464 -10.40595 -10.32488 -10.22329 -10.02750 -9.99051 -9.96340 -9.58008 -9.42967 -9.08604 -8.41294 -8.17035 -6.54486 -5.67764 -3.08603 1.28508 2.33649 2.57187 2.91764 3.23148 3.46335 3.52799 3.57613 3.83873 4.35899 4.58307 4.60876 4.74476 4.80483 4.89057 4.96523 5.06453 5.20715 5.30485 5.41504 5.46242 5.52384 5.56489 5.60873 5.71583 5.76307 5.82922 5.86702 5.89415 5.94351 5.95778 5.97506 6.18876 6.19189 6.26982 6.43924 6.47701 6.64273 6.67801 6.71227 6.85152 6.92519 7.13535 7.22236 7.50176 7.70934 7.78040 7.82560 7.91613 8.51958 8.57577 9.33353 9.97051 10.53662 11.41135 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013289 B = 0.002869 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.504153 B = 9758.406664 C =10982.109561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C 0.109 3.891 4 N -0.611 5.611 5 C 0.513 3.487 6 O -0.520 6.520 7 C -0.131 4.131 8 C -0.013 4.013 9 C 0.236 3.764 10 N -0.539 5.539 11 C 0.259 3.741 12 N -0.488 5.488 13 H 0.441 0.559 14 N -0.314 5.314 15 C 0.161 3.839 16 C -0.147 4.147 17 C 0.151 3.849 18 N -0.590 5.590 19 C -0.245 4.245 20 H 0.064 0.936 21 C 0.000 4.000 22 N -0.906 5.906 23 Si 0.900 3.100 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.176 3.824 28 C -0.153 4.153 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.222 0.778 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.044 0.956 44 H 0.014 0.986 45 H 0.054 0.946 46 H 0.252 0.748 47 H 0.014 0.986 48 H 0.088 0.912 49 H 0.043 0.957 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.921 2.891 -20.084 27.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.184 4.184 3 C -0.015 4.015 4 N -0.343 5.343 5 C 0.300 3.700 6 O -0.395 6.395 7 C -0.173 4.173 8 C -0.053 4.053 9 C -0.047 4.047 10 N -0.267 5.267 11 C -0.040 4.040 12 N -0.206 5.206 13 H 0.286 0.714 14 N -0.143 5.143 15 C 0.059 3.941 16 C -0.187 4.187 17 C 0.024 3.976 18 N -0.312 5.312 19 C -0.375 4.375 20 H 0.082 0.918 21 C -0.198 4.198 22 N -0.551 5.551 23 Si 0.730 3.270 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.204 1.204 27 C 0.050 3.950 28 C -0.193 4.193 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.238 0.762 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.063 0.937 44 H 0.032 0.968 45 H 0.073 0.927 46 H 0.062 0.938 47 H 0.032 0.968 48 H 0.106 0.894 49 H 0.061 0.939 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.960 3.128 -19.589 26.760 hybrid contribution 0.192 -0.062 -0.731 0.758 sum -17.768 3.066 -20.320 27.166 Atomic orbital electron populations 1.21700 0.95381 1.01881 1.01685 1.22002 0.95812 0.97413 1.03155 1.21644 0.80237 0.96779 1.02837 1.48315 1.05992 1.73401 1.06617 1.20338 0.88074 0.76608 0.84940 1.90735 1.13538 1.48250 1.87015 1.21632 0.99059 1.04345 0.92223 1.19703 0.95562 1.06069 0.83999 1.24388 0.97211 0.85295 0.97796 1.70481 1.18227 1.31469 1.06534 1.26143 0.96318 0.84515 0.97052 1.48160 1.44981 1.07118 1.20373 0.71409 1.78061 1.16826 1.22577 0.96817 1.21103 0.93045 0.97215 0.82727 1.22446 0.99251 0.95047 1.01921 1.20837 0.94136 0.90280 0.92387 1.44013 1.05862 0.99437 1.81895 1.19170 0.83305 1.06492 1.28495 0.91847 1.25011 0.97717 1.00004 0.97045 1.70029 1.33878 1.18287 1.32881 0.86321 0.85767 0.77029 0.77847 1.21527 1.21629 1.20441 1.20718 0.94072 0.90522 0.89691 1.22620 0.99018 0.94404 1.03210 0.92526 0.92551 0.92881 0.91740 0.91086 0.90421 0.90872 0.88740 0.89169 0.88547 0.87992 0.76172 0.90790 0.89890 0.93744 0.96820 0.92725 0.93789 0.96777 0.89401 0.93861 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.15 -1.42 6.26 -26.73 -0.17 -1.59 16 3 C 0.11 1.13 5.18 -4.04 -0.02 1.11 16 4 N -0.61 -8.77 2.42 -166.06 -0.40 -9.17 16 5 C 0.51 7.82 7.10 -10.98 -0.08 7.74 16 6 O -0.52 -10.11 12.22 5.56 0.07 -10.04 16 7 C -0.13 -1.51 4.23 -27.88 -0.12 -1.62 16 8 C -0.01 -0.16 5.13 -27.88 -0.14 -0.30 16 9 C 0.24 2.79 7.39 -156.85 -1.16 1.63 16 10 N -0.54 -5.91 11.19 -11.98 -0.13 -6.05 16 11 C 0.26 1.70 13.13 -90.66 -1.19 0.51 16 12 N -0.49 -3.31 7.45 29.53 0.22 -3.09 16 13 H 0.44 1.25 8.96 -182.34 -1.63 -0.39 16 14 N -0.31 -3.51 12.80 32.42 0.41 -3.09 16 15 C 0.16 2.84 2.51 -67.89 -0.17 2.67 16 16 C -0.15 -2.81 5.27 -26.61 -0.14 -2.95 16 17 C 0.15 3.34 6.52 -3.71 -0.02 3.31 16 18 N -0.59 -15.53 2.99 -172.32 -0.52 -16.04 16 19 C -0.24 -7.06 9.58 -15.06 -0.14 -7.20 16 20 H 0.06 1.81 7.89 -52.49 -0.41 1.40 16 21 C 0.00 0.00 4.92 -17.43 -0.09 -0.08 16 22 N -0.91 -27.10 11.19 55.49 0.62 -26.48 16 23 Si 0.90 22.65 29.59 -169.99 -5.03 17.63 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 27 C 0.18 4.40 5.30 -3.71 -0.02 4.38 16 28 C -0.15 -3.17 5.27 -26.61 -0.14 -3.31 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.66 7.22 -51.93 -0.38 0.28 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.76 7.92 -51.93 -0.41 0.35 16 35 H 0.07 0.63 6.44 -51.93 -0.33 0.30 16 36 H 0.09 1.00 7.19 -51.93 -0.37 0.62 16 37 H 0.09 0.91 7.40 -51.93 -0.38 0.53 16 38 H 0.10 1.24 8.10 -51.93 -0.42 0.82 16 39 H 0.10 1.35 8.10 -51.93 -0.42 0.93 16 40 H 0.22 0.29 8.06 -52.48 -0.42 -0.14 16 41 H 0.07 1.25 7.79 -51.93 -0.40 0.84 16 42 H 0.08 1.81 6.21 -51.93 -0.32 1.49 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.05 1.20 7.93 -51.93 -0.41 0.79 16 46 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.09 2.47 6.07 -51.92 -0.31 2.15 16 49 H 0.04 0.83 8.14 -51.92 -0.42 0.40 16 50 H 0.08 1.87 6.21 -51.93 -0.32 1.54 16 LS Contribution 393.80 15.07 5.93 5.93 Total: -1.00 -36.29 393.80 -11.54 -47.83 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -9.48 Total: -0.94 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -3.23 Total: 3.51 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: 0.20 Total: -63.92 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.04 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.03 Total: 17.63 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.29 -11.54 -47.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690134303.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.783 kcal (2) G-P(sol) polarization free energy of solvation -36.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds