Wall clock time and date at job start Tue Mar 31 2020 19:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46883 * 2 1 4 4 N 1.46496 * 109.47270 * 179.97438 * 3 2 1 5 5 C 1.34778 * 119.99763 * 90.00273 * 4 3 2 6 6 O 1.21281 * 120.00475 * 179.97438 * 5 4 3 7 7 C 1.50708 * 119.99883 * 0.02562 * 5 4 3 8 8 C 1.52998 * 109.46859 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.46732 * 180.02562 * 8 7 5 10 10 N 1.33249 * 125.52319 * 269.68643 * 9 8 7 11 11 C 1.30835 * 109.82450 * 179.85750 * 10 9 8 12 12 N 1.34422 * 108.07807 * 0.40502 * 11 10 9 13 13 H 0.97002 * 126.82318 * 179.78815 * 12 11 10 14 14 N 1.30709 * 125.53207 * 89.99750 * 9 8 7 15 15 C 1.46497 * 120.00663 * 270.00316 * 4 3 2 16 16 C 1.53041 * 109.46343 * 240.02875 * 15 4 3 17 17 C 1.53192 * 109.31163 * 178.59898 * 16 15 4 18 18 N 1.46927 * 108.76608 * 54.65540 * 17 16 15 19 19 C 1.36933 * 120.62954 * 126.40328 * 18 17 16 20 20 H 1.08000 * 120.00254 * 331.82646 * 19 18 17 21 21 C 1.38812 * 119.99857 * 151.82238 * 19 18 17 22 22 N 1.31624 * 120.00062 * 343.07815 * 21 19 18 23 23 Si 1.86805 * 119.99990 * 163.07378 * 21 19 18 24 24 H 1.48501 * 109.47171 * 90.00406 * 23 21 19 25 25 H 1.48505 * 109.47038 * 210.00477 * 23 21 19 26 26 H 1.48500 * 109.46884 * 330.00003 * 23 21 19 27 27 C 1.46921 * 118.73618 * 306.38074 * 18 17 16 28 28 C 1.53040 * 109.46015 * 119.97222 * 15 4 3 29 29 H 1.09007 * 109.46421 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46867 * 299.99374 * 1 2 3 31 31 H 1.08993 * 109.47083 * 59.99810 * 1 2 3 32 32 H 1.09005 * 109.47250 * 240.01008 * 2 1 3 33 33 H 1.08996 * 109.47811 * 120.00263 * 2 1 3 34 34 H 1.09004 * 109.46858 * 60.00620 * 3 2 1 35 35 H 1.08998 * 109.47570 * 300.00448 * 3 2 1 36 36 H 1.08998 * 109.46779 * 299.99262 * 7 5 4 37 37 H 1.08998 * 109.47180 * 59.99583 * 7 5 4 38 38 H 1.09005 * 109.47208 * 299.99616 * 8 7 5 39 39 H 1.08998 * 109.47646 * 59.99769 * 8 7 5 40 40 H 1.08004 * 125.95605 * 180.12910 * 11 10 9 41 41 H 1.09006 * 109.45660 * 359.97438 * 15 4 3 42 42 H 1.09001 * 109.49161 * 298.56422 * 16 15 4 43 43 H 1.09002 * 109.49775 * 58.65888 * 16 15 4 44 44 H 1.08997 * 109.59760 * 294.86606 * 17 16 15 45 45 H 1.09001 * 109.69808 * 174.50644 * 17 16 15 46 46 H 0.96994 * 119.99832 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.58933 * 293.82066 * 27 18 17 48 48 H 1.09007 * 109.70253 * 173.46450 * 27 18 17 49 49 H 1.09007 * 109.49681 * 301.33720 * 28 15 4 50 50 H 1.08995 * 109.50004 * 61.40453 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1793 1.4426 -1.1663 6 8 5.3921 1.4431 -1.1660 7 6 3.4262 1.4430 -2.4718 8 6 4.4209 1.4422 -3.6343 9 6 3.6678 1.4432 -4.9396 10 7 3.2850 0.3592 -5.6134 11 6 2.6516 0.7141 -6.7019 12 7 2.6248 2.0572 -6.7498 13 1 2.2253 2.6064 -7.4424 14 7 3.2893 2.5074 -5.5974 15 6 4.2370 1.4428 1.2695 16 6 5.1162 2.6929 1.3509 17 6 5.8533 2.7073 2.6937 18 7 6.5869 1.4432 2.8439 19 6 7.9283 1.4434 3.1189 20 1 8.5459 2.2681 2.7949 21 6 8.4944 0.3837 3.8142 22 7 7.7273 -0.4429 4.4928 23 14 10.3451 0.1308 3.7866 24 1 10.9633 0.8757 4.9128 25 1 10.6490 -1.3163 3.9241 26 1 10.8940 0.6318 2.5010 27 6 5.8537 0.1789 2.6938 28 6 5.1163 0.1929 1.3510 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5137 -0.8901 33 1 1.8935 -0.5138 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 1.9564 -0.8899 36 1 2.7994 0.5531 -2.5299 37 1 2.7998 2.3331 -2.5296 38 1 5.0482 2.3318 -3.5764 39 1 5.0470 0.5518 -3.5763 40 1 2.2284 0.0446 -7.4362 41 1 3.5282 1.4433 2.0977 42 1 5.8416 2.6809 0.5375 43 1 4.4919 3.5827 1.2692 44 1 5.1329 2.8103 3.5052 45 1 6.5541 3.5418 2.7192 46 1 8.1228 -1.1836 4.9784 47 1 5.1333 0.0757 3.5053 48 1 6.5533 -0.6567 2.7177 49 1 4.4921 -0.6970 1.2695 50 1 5.8414 0.2044 0.5373 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690134303.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:56 Heat of formation + Delta-G solvation = 41.548960 kcal Electronic energy + Delta-G solvation = -29872.755504 eV Core-core repulsion = 25936.229314 eV Total energy + Delta-G solvation = -3936.526190 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.06189 -41.38417 -38.76082 -37.14820 -35.47623 -34.71876 -33.40008 -32.97880 -31.99717 -31.54783 -30.96460 -27.45018 -27.11291 -25.80019 -23.86442 -23.82433 -23.45512 -22.58186 -21.32565 -20.93983 -19.80601 -19.23446 -18.80553 -17.61022 -17.28720 -16.85445 -16.65311 -16.32736 -15.92410 -15.64101 -15.44213 -15.29570 -15.13458 -14.84915 -14.73356 -14.17384 -14.00459 -13.93343 -13.81210 -13.35967 -13.18436 -13.08659 -13.03092 -12.98540 -12.67679 -12.59644 -12.55472 -12.28608 -12.19069 -12.13118 -11.96516 -11.76981 -11.56730 -11.35363 -11.19067 -11.08575 -11.03829 -10.73576 -10.57755 -10.37457 -9.50423 -8.66845 -7.87715 -5.31635 0.66040 1.43570 1.46099 1.56437 1.73124 1.79436 1.87523 2.13447 2.51006 3.15284 3.27566 3.59164 3.69919 3.73055 3.93693 4.03484 4.06595 4.09521 4.16506 4.24077 4.34184 4.38796 4.46465 4.53661 4.56005 4.62513 4.71082 4.75327 4.85576 4.89738 4.91745 4.97549 4.98425 5.02300 5.12074 5.19102 5.26291 5.26796 5.30453 5.37305 5.46339 5.50270 5.52972 5.64437 5.70177 5.83859 6.29243 6.39906 6.57596 7.13011 7.15391 7.33415 7.86931 8.38040 9.18909 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013289 B = 0.002869 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.504153 B = 9758.406664 C =10982.109561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.142 4.142 3 C 0.104 3.896 4 N -0.606 5.606 5 C 0.508 3.492 6 O -0.569 6.569 7 C -0.113 4.113 8 C -0.009 4.009 9 C 0.224 3.776 10 N -0.579 5.579 11 C 0.277 3.723 12 N -0.475 5.475 13 H 0.458 0.542 14 N -0.343 5.343 15 C 0.170 3.830 16 C -0.132 4.132 17 C 0.147 3.853 18 N -0.609 5.609 19 C -0.262 4.262 20 H 0.059 0.941 21 C -0.050 4.050 22 N -0.933 5.933 23 Si 0.964 3.036 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.277 1.277 27 C 0.185 3.815 28 C -0.136 4.136 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.274 0.726 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.024 0.976 45 H 0.050 0.950 46 H 0.250 0.750 47 H 0.004 0.996 48 H 0.049 0.951 49 H 0.057 0.943 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.699 3.538 -22.124 31.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.181 4.181 3 C -0.017 4.017 4 N -0.338 5.338 5 C 0.297 3.703 6 O -0.448 6.448 7 C -0.153 4.153 8 C -0.049 4.049 9 C -0.058 4.058 10 N -0.309 5.309 11 C -0.021 4.021 12 N -0.195 5.195 13 H 0.307 0.693 14 N -0.173 5.173 15 C 0.067 3.933 16 C -0.172 4.172 17 C 0.021 3.979 18 N -0.333 5.333 19 C -0.392 4.392 20 H 0.077 0.923 21 C -0.245 4.245 22 N -0.579 5.579 23 Si 0.792 3.208 24 H -0.206 1.206 25 H -0.216 1.216 26 H -0.202 1.202 27 C 0.059 3.941 28 C -0.176 4.176 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.289 0.711 41 H 0.109 0.891 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.042 0.958 45 H 0.068 0.932 46 H 0.059 0.941 47 H 0.022 0.978 48 H 0.067 0.933 49 H 0.076 0.924 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.808 3.812 -21.668 30.282 hybrid contribution 0.994 -0.250 -0.191 1.043 sum -19.814 3.562 -21.859 29.717 Atomic orbital electron populations 1.21659 0.93410 1.02337 1.02692 1.21950 0.97433 0.96678 1.02010 1.21962 0.77270 0.97639 1.04868 1.48268 1.07695 1.72768 1.05048 1.21020 0.87689 0.75358 0.86219 1.90728 1.15918 1.50392 1.87746 1.21519 0.98482 1.05937 0.89404 1.19503 0.95633 1.04425 0.85343 1.24118 0.97935 0.85982 0.97812 1.70443 1.20132 1.31918 1.08386 1.27074 0.94007 0.84740 0.96250 1.48084 1.44094 1.07692 1.19602 0.69271 1.77950 1.17875 1.23075 0.98401 1.20785 0.92949 0.94544 0.85069 1.22232 0.98991 0.97229 0.98775 1.20986 0.94198 0.88352 0.94356 1.44261 1.05668 1.01131 1.82229 1.19441 0.84859 1.06621 1.28289 0.92349 1.25750 1.01891 0.99873 0.97009 1.70165 1.35462 1.18651 1.33634 0.85327 0.80780 0.76768 0.77904 1.20597 1.21557 1.20235 1.20487 0.93073 0.89041 0.91542 1.22327 0.98764 0.97085 0.99386 0.92424 0.91980 0.91419 0.92220 0.93015 0.89034 0.88199 0.87248 0.86979 0.89985 0.89932 0.71109 0.89091 0.92707 0.90601 0.95760 0.93153 0.94060 0.97768 0.93266 0.92442 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.91 71.98 0.71 -1.04 16 2 C -0.14 -2.44 6.26 30.60 0.19 -2.25 16 3 C 0.10 1.84 5.18 86.38 0.45 2.29 16 4 N -0.61 -16.48 2.42 -797.67 -1.93 -18.41 16 5 C 0.51 15.26 7.10 87.66 0.62 15.88 16 6 O -0.57 -22.92 12.22 -3.03 -0.04 -22.96 16 7 C -0.11 -2.43 4.23 29.85 0.13 -2.31 16 8 C -0.01 -0.21 5.13 29.85 0.15 -0.06 16 9 C 0.22 5.10 7.39 138.63 1.03 6.13 16 10 N -0.58 -11.73 11.19 -191.80 -2.15 -13.87 16 11 C 0.28 2.76 13.13 180.36 2.37 5.13 16 12 N -0.48 -5.13 7.45 -60.49 -0.45 -5.58 16 13 H 0.46 1.19 8.96 -213.10 -1.91 -0.72 16 14 N -0.34 -7.16 12.80 -51.33 -0.66 -7.81 16 15 C 0.17 5.85 2.51 45.02 0.11 5.97 16 16 C -0.13 -5.02 5.27 30.67 0.16 -4.86 16 17 C 0.15 6.56 6.52 86.36 0.56 7.12 16 18 N -0.61 -33.10 2.99 -699.09 -2.09 -35.19 16 19 C -0.26 -15.58 9.58 84.03 0.81 -14.77 16 20 H 0.06 3.45 7.89 -2.91 -0.02 3.42 16 21 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 22 N -0.93 -57.58 11.19 21.65 0.24 -57.34 16 23 Si 0.96 47.80 29.59 68.60 2.03 49.83 16 24 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 25 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 26 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 27 C 0.18 9.58 5.30 86.36 0.46 10.04 16 28 C -0.14 -5.78 5.27 30.67 0.16 -5.62 16 29 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 1.09 7.22 -2.38 -0.02 1.07 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.43 7.92 -2.38 -0.02 1.41 16 35 H 0.10 1.29 6.44 -2.39 -0.02 1.27 16 36 H 0.11 2.07 7.19 -2.39 -0.02 2.06 16 37 H 0.11 1.96 7.40 -2.39 -0.02 1.94 16 38 H 0.08 2.22 8.10 -2.38 -0.02 2.20 16 39 H 0.08 2.32 8.10 -2.39 -0.02 2.30 16 40 H 0.27 -0.62 8.06 -2.91 -0.02 -0.64 16 41 H 0.09 2.88 7.79 -2.38 -0.02 2.86 16 42 H 0.05 2.43 6.21 -2.39 -0.01 2.42 16 43 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.05 2.24 7.93 -2.39 -0.02 2.22 16 46 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 47 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 48 H 0.05 2.91 6.07 -2.38 -0.01 2.89 16 49 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 50 H 0.05 2.47 6.21 -2.39 -0.01 2.45 16 Total: -1.00 -83.39 393.80 2.31 -81.07 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -0.97 Total: 11.18 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 8.33 Total: 19.08 kcal Atomic # 7 Polarization: -131.18 SS G_CDS: -7.04 Total: -138.21 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.04 Total: -22.96 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -83.39 2.31 -81.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690134303.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.623 kcal (2) G-P(sol) polarization free energy of solvation -83.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds