Wall clock time and date at job start Tue Mar 31 2020 19:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47561 * 2 1 4 4 N 1.46493 * 109.47436 * 180.02562 * 3 2 1 5 5 C 1.34779 * 120.00114 * 276.16368 * 4 3 2 6 6 O 1.21558 * 120.00476 * 176.05886 * 5 4 3 7 7 C 1.47803 * 119.99837 * 356.05536 * 5 4 3 8 8 N 1.32440 * 127.23476 * 5.26494 * 7 5 4 9 9 N 1.28588 * 108.52234 * 179.86625 * 8 7 5 10 10 C 1.46498 * 124.44582 * 180.13885 * 9 8 7 11 11 C 1.52993 * 109.47406 * 270.29057 * 10 9 8 12 12 N 1.28528 * 111.11368 * 0.41799 * 9 8 7 13 13 C 1.31133 * 109.05724 * 359.74183 * 12 9 8 14 14 C 1.50701 * 127.11069 * 180.02562 * 13 12 9 15 15 C 1.46499 * 120.00260 * 96.16456 * 4 3 2 16 16 H 1.09002 * 110.91419 * 356.09557 * 15 4 3 17 17 C 1.55155 * 111.00589 * 119.99965 * 15 4 3 18 18 C 1.54333 * 102.93922 * 153.57714 * 17 15 4 19 19 N 1.47016 * 107.26981 * 337.80576 * 18 17 15 20 20 C 1.36942 * 125.64434 * 178.98736 * 19 18 17 21 21 H 1.07999 * 119.99868 * 179.97438 * 20 19 18 22 22 C 1.38813 * 119.99849 * 359.97438 * 20 19 18 23 23 N 1.31616 * 120.00189 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99808 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47330 * 59.99227 * 24 22 20 26 26 H 1.48507 * 109.47312 * 179.97438 * 24 22 20 27 27 H 1.48507 * 109.46797 * 299.99272 * 24 22 20 28 28 C 1.47423 * 108.70664 * 358.94098 * 19 18 17 29 29 H 1.08997 * 109.47634 * 59.99255 * 1 2 3 30 30 H 1.08998 * 109.47615 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46755 * 300.00041 * 1 2 3 32 32 H 1.09003 * 109.47101 * 240.00355 * 2 1 3 33 33 H 1.09005 * 109.47475 * 120.00485 * 2 1 3 34 34 H 1.09005 * 109.47120 * 60.00182 * 3 2 1 35 35 H 1.09005 * 109.47122 * 300.00701 * 3 2 1 36 36 H 1.09003 * 109.46563 * 30.28817 * 10 9 8 37 37 H 1.08993 * 109.47426 * 150.28643 * 10 9 8 38 38 H 1.09004 * 109.47316 * 59.99845 * 11 10 9 39 39 H 1.09000 * 109.47585 * 179.97438 * 11 10 9 40 40 H 1.08997 * 109.47108 * 299.99894 * 11 10 9 41 41 H 1.08996 * 109.46675 * 269.97843 * 14 13 12 42 42 H 1.08997 * 109.46725 * 29.97544 * 14 13 12 43 43 H 1.09000 * 109.47015 * 149.97379 * 14 13 12 44 44 H 1.09002 * 110.72191 * 271.93479 * 17 15 4 45 45 H 1.08999 * 110.72330 * 35.21454 * 17 15 4 46 46 H 1.09003 * 109.87845 * 97.22478 * 18 17 15 47 47 H 1.09000 * 109.87511 * 218.23117 * 18 17 15 48 48 H 0.97006 * 120.00126 * 180.02562 * 23 22 20 49 49 H 1.09000 * 110.36680 * 265.29273 * 28 19 18 50 50 H 1.08994 * 110.36554 * 142.96628 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1794 1.3169 1.1595 6 8 5.3928 1.2448 1.1526 7 6 3.4435 1.2670 2.4404 8 7 2.1303 1.2361 2.6095 9 7 1.8817 1.1936 3.8704 10 6 0.5365 1.1469 4.4486 11 6 0.0334 2.5722 4.6854 12 7 2.9681 1.2034 4.5571 13 6 3.9916 1.2485 3.7386 14 6 5.4521 1.2746 4.1095 15 6 4.2370 1.5788 -1.2623 16 1 3.5515 1.6008 -2.1095 17 6 5.1423 2.8388 -1.2466 18 6 6.2653 2.4698 -2.2389 19 7 6.3047 1.0029 -2.3277 20 6 7.1517 0.2738 -3.1191 21 1 7.1020 -0.8051 -3.1127 22 6 8.0741 0.9213 -3.9294 23 7 8.1344 2.2361 -3.9375 24 14 9.2291 -0.0732 -5.0094 25 1 8.4351 -0.8966 -5.9564 26 1 10.1093 0.8478 -5.7725 27 1 10.0607 -0.9616 -4.1581 28 6 5.2822 0.4468 -1.4229 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 -0.1365 0.6335 3.7618 37 1 0.5669 0.6102 5.3967 38 1 0.0028 3.1091 3.7372 39 1 -0.9677 2.5375 5.1152 40 1 0.7063 3.0857 5.3721 41 1 5.7793 2.3080 4.2240 42 1 5.5979 0.7410 5.0486 43 1 6.0350 0.7937 3.3240 44 1 4.5923 3.7132 -1.5944 45 1 5.5492 3.0090 -0.2498 46 1 6.0482 2.8949 -3.2189 47 1 7.2206 2.8474 -1.8746 48 1 8.7787 2.6886 -4.5041 49 1 5.7241 0.1987 -0.4579 50 1 4.8211 -0.4349 -1.8679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691869275.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:11 Heat of formation + Delta-G solvation = 112.431255 kcal Electronic energy + Delta-G solvation = -30708.735625 eV Core-core repulsion = 26775.283122 eV Total energy + Delta-G solvation = -3933.452503 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.74291 -39.89240 -36.78148 -35.93518 -35.27403 -33.02810 -32.95689 -31.76962 -31.35771 -29.04323 -28.17358 -27.31245 -26.18428 -25.04022 -24.09975 -22.76580 -21.78356 -21.33874 -20.75469 -19.94065 -18.94419 -17.45395 -17.09845 -16.74724 -16.56852 -15.50985 -15.01290 -14.81542 -14.64367 -14.49604 -14.27386 -13.95312 -13.77323 -13.55635 -13.31858 -13.00804 -12.90599 -12.72092 -12.53408 -12.26917 -12.14964 -12.13642 -11.87448 -11.78064 -11.63239 -11.47628 -11.37669 -11.01062 -10.83138 -10.75146 -10.61632 -10.57848 -10.25376 -10.17276 -10.02565 -9.82429 -9.54633 -9.26133 -9.15918 -8.48577 -8.23569 -6.63390 -5.57480 -2.89362 1.31001 1.88834 1.97165 3.12585 3.41459 3.49256 3.53012 3.54601 3.77548 4.36751 4.37027 4.61322 4.63351 4.66361 4.78697 4.97133 5.03335 5.06910 5.19235 5.32281 5.40269 5.42449 5.51374 5.54731 5.56971 5.62942 5.70037 5.71129 5.76350 5.82141 5.88395 5.91983 5.95261 5.97905 6.09917 6.21895 6.33377 6.37272 6.55863 6.57671 6.67862 6.77645 6.82985 7.33860 7.63501 7.70622 7.79506 7.96152 8.07278 8.38535 8.44349 9.36129 9.96715 10.64065 11.54320 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.003090 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.724697 B = 9058.959004 C = 9817.307073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.105 3.895 4 N -0.589 5.589 5 C 0.600 3.400 6 O -0.501 6.501 7 C -0.039 4.039 8 N -0.244 5.244 9 N -0.149 5.149 10 C 0.135 3.865 11 C -0.171 4.171 12 N -0.296 5.296 13 C 0.061 3.939 14 C -0.071 4.071 15 C 0.132 3.868 16 H 0.093 0.907 17 C -0.153 4.153 18 C 0.186 3.814 19 N -0.602 5.602 20 C -0.221 4.221 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.924 5.924 24 Si 0.911 3.089 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.122 3.878 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.100 0.900 44 H 0.055 0.945 45 H 0.070 0.930 46 H 0.044 0.956 47 H 0.043 0.957 48 H 0.251 0.749 49 H 0.055 0.945 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.320 0.016 17.491 26.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C -0.019 4.019 4 N -0.320 5.320 5 C 0.384 3.616 6 O -0.374 6.374 7 C -0.202 4.202 8 N -0.092 5.092 9 N -0.051 5.051 10 C 0.016 3.984 11 C -0.230 4.230 12 N -0.137 5.137 13 C -0.102 4.102 14 C -0.129 4.129 15 C 0.029 3.971 16 H 0.111 0.889 17 C -0.192 4.192 18 C 0.061 3.939 19 N -0.329 5.329 20 C -0.349 4.349 21 H 0.094 0.906 22 C -0.207 4.207 23 N -0.572 5.572 24 Si 0.742 3.258 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.005 4.005 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.118 0.882 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.073 0.927 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -20.736 -0.015 17.846 27.358 hybrid contribution 1.115 -0.443 -0.950 1.530 sum -19.621 -0.458 16.896 25.897 Atomic orbital electron populations 1.21629 0.95460 1.01376 1.01568 1.21836 0.95781 0.97289 1.02276 1.21937 0.79078 0.97334 1.03553 1.47788 1.06708 1.71264 1.06286 1.16719 0.86163 0.77632 0.81094 1.90831 1.12212 1.48724 1.85593 1.23157 0.89197 1.11139 0.96686 1.74554 1.16962 1.16963 1.00734 1.48199 1.07326 1.48610 1.00991 1.22017 0.75809 1.00265 1.00337 1.22189 1.02380 0.94854 1.03540 1.73913 0.92620 1.21017 1.26191 1.23266 0.97104 1.01475 0.88400 1.20263 0.85922 1.03608 1.03152 1.22484 0.93417 0.98336 0.82909 0.88921 1.23234 0.98312 0.95686 1.01945 1.21039 0.93910 0.84082 0.94894 1.44304 1.38920 1.01832 1.47799 1.19001 1.10307 0.89986 1.15620 0.90648 1.24773 0.99713 0.95782 1.00382 1.69958 1.38465 1.06053 1.42711 0.86210 0.80670 0.78704 0.80244 1.21330 1.21692 1.21257 1.21995 0.89535 0.93279 0.95668 0.92776 0.92961 0.92783 0.91867 0.92070 0.88540 0.90716 0.87276 0.87334 0.91299 0.89565 0.91359 0.90175 0.90881 0.88168 0.92601 0.91122 0.93815 0.93925 0.93866 0.92735 0.95189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.13 -1.52 5.79 -26.73 -0.15 -1.67 16 3 C 0.10 1.29 4.98 -4.05 -0.02 1.27 16 4 N -0.59 -9.42 2.58 -164.79 -0.42 -9.85 16 5 C 0.60 10.32 6.91 -12.35 -0.09 10.24 16 6 O -0.50 -10.18 11.24 5.32 0.06 -10.12 16 7 C -0.04 -0.58 6.69 -82.68 -0.55 -1.13 16 8 N -0.24 -3.01 7.58 33.43 0.25 -2.76 16 9 N -0.15 -1.61 3.94 -10.62 -0.04 -1.65 16 10 C 0.14 0.78 7.24 -4.05 -0.03 0.76 16 11 C -0.17 -0.82 10.24 37.15 0.38 -0.44 16 12 N -0.30 -3.74 12.01 33.92 0.41 -3.33 16 13 C 0.06 0.85 7.39 -81.87 -0.61 0.25 16 14 C -0.07 -0.87 10.05 36.01 0.36 -0.50 16 15 C 0.13 2.48 3.54 -65.78 -0.23 2.25 16 16 H 0.09 1.63 7.84 -51.93 -0.41 1.23 16 17 C -0.15 -3.14 6.34 -24.89 -0.16 -3.30 16 18 C 0.19 4.81 5.37 -3.06 -0.02 4.79 16 19 N -0.60 -16.39 3.39 -170.07 -0.58 -16.96 16 20 C -0.22 -6.47 10.28 -15.06 -0.15 -6.62 16 21 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 22 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 23 N -0.92 -28.16 10.31 55.49 0.57 -27.59 16 24 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 C 0.12 2.78 6.58 -2.53 -0.02 2.77 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.78 7.14 -51.93 -0.37 0.41 16 34 H 0.10 1.15 5.33 -51.93 -0.28 0.87 16 35 H 0.07 0.84 7.87 -51.93 -0.41 0.43 16 36 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.10 1.40 6.68 -51.93 -0.35 1.05 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.07 1.51 6.38 -51.93 -0.33 1.18 16 46 H 0.04 1.22 7.38 -51.93 -0.38 0.83 16 47 H 0.04 1.23 7.50 -51.93 -0.39 0.84 16 48 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 49 H 0.06 1.34 5.39 -51.93 -0.28 1.06 16 50 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 392.24 15.07 5.91 5.91 Total: -1.00 -34.73 392.24 -8.11 -42.84 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -8.24 Total: -1.80 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -1.01 Total: 7.39 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: 0.19 Total: -62.14 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.06 Total: -10.12 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.73 -8.11 -42.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691869275.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.272 kcal (2) G-P(sol) polarization free energy of solvation -34.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds