Wall clock time and date at job start Tue Mar 31 2020 19:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47561 * 2 1 4 4 N 1.46493 * 109.47436 * 180.02562 * 3 2 1 5 5 C 1.34779 * 120.00114 * 276.16368 * 4 3 2 6 6 O 1.21558 * 120.00476 * 176.05886 * 5 4 3 7 7 C 1.47803 * 119.99837 * 356.05536 * 5 4 3 8 8 N 1.32440 * 127.23476 * 5.26494 * 7 5 4 9 9 N 1.28588 * 108.52234 * 179.86625 * 8 7 5 10 10 C 1.46498 * 124.44582 * 180.13885 * 9 8 7 11 11 C 1.52993 * 109.47406 * 270.29057 * 10 9 8 12 12 N 1.28528 * 111.11368 * 0.41799 * 9 8 7 13 13 C 1.31133 * 109.05724 * 359.74183 * 12 9 8 14 14 C 1.50701 * 127.11069 * 180.02562 * 13 12 9 15 15 C 1.46499 * 120.00260 * 96.16456 * 4 3 2 16 16 H 1.09002 * 110.91419 * 356.09557 * 15 4 3 17 17 C 1.55155 * 111.00589 * 119.99965 * 15 4 3 18 18 C 1.54333 * 102.93922 * 153.57714 * 17 15 4 19 19 N 1.47016 * 107.26981 * 337.80576 * 18 17 15 20 20 C 1.36942 * 125.64434 * 178.98736 * 19 18 17 21 21 H 1.07999 * 119.99868 * 179.97438 * 20 19 18 22 22 C 1.38813 * 119.99849 * 359.97438 * 20 19 18 23 23 N 1.31616 * 120.00189 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99808 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47330 * 59.99227 * 24 22 20 26 26 H 1.48507 * 109.47312 * 179.97438 * 24 22 20 27 27 H 1.48507 * 109.46797 * 299.99272 * 24 22 20 28 28 C 1.47423 * 108.70664 * 358.94098 * 19 18 17 29 29 H 1.08997 * 109.47634 * 59.99255 * 1 2 3 30 30 H 1.08998 * 109.47615 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46755 * 300.00041 * 1 2 3 32 32 H 1.09003 * 109.47101 * 240.00355 * 2 1 3 33 33 H 1.09005 * 109.47475 * 120.00485 * 2 1 3 34 34 H 1.09005 * 109.47120 * 60.00182 * 3 2 1 35 35 H 1.09005 * 109.47122 * 300.00701 * 3 2 1 36 36 H 1.09003 * 109.46563 * 30.28817 * 10 9 8 37 37 H 1.08993 * 109.47426 * 150.28643 * 10 9 8 38 38 H 1.09004 * 109.47316 * 59.99845 * 11 10 9 39 39 H 1.09000 * 109.47585 * 179.97438 * 11 10 9 40 40 H 1.08997 * 109.47108 * 299.99894 * 11 10 9 41 41 H 1.08996 * 109.46675 * 269.97843 * 14 13 12 42 42 H 1.08997 * 109.46725 * 29.97544 * 14 13 12 43 43 H 1.09000 * 109.47015 * 149.97379 * 14 13 12 44 44 H 1.09002 * 110.72191 * 271.93479 * 17 15 4 45 45 H 1.08999 * 110.72330 * 35.21454 * 17 15 4 46 46 H 1.09003 * 109.87845 * 97.22478 * 18 17 15 47 47 H 1.09000 * 109.87511 * 218.23117 * 18 17 15 48 48 H 0.97006 * 120.00126 * 180.02562 * 23 22 20 49 49 H 1.09000 * 110.36680 * 265.29273 * 28 19 18 50 50 H 1.08994 * 110.36554 * 142.96628 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1794 1.3169 1.1595 6 8 5.3928 1.2448 1.1526 7 6 3.4435 1.2670 2.4404 8 7 2.1303 1.2361 2.6095 9 7 1.8817 1.1936 3.8704 10 6 0.5365 1.1469 4.4486 11 6 0.0334 2.5722 4.6854 12 7 2.9681 1.2034 4.5571 13 6 3.9916 1.2485 3.7386 14 6 5.4521 1.2746 4.1095 15 6 4.2370 1.5788 -1.2623 16 1 3.5515 1.6008 -2.1095 17 6 5.1423 2.8388 -1.2466 18 6 6.2653 2.4698 -2.2389 19 7 6.3047 1.0029 -2.3277 20 6 7.1517 0.2738 -3.1191 21 1 7.1020 -0.8051 -3.1127 22 6 8.0741 0.9213 -3.9294 23 7 8.1344 2.2361 -3.9375 24 14 9.2291 -0.0732 -5.0094 25 1 8.4351 -0.8966 -5.9564 26 1 10.1093 0.8478 -5.7725 27 1 10.0607 -0.9616 -4.1581 28 6 5.2822 0.4468 -1.4229 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 -0.1365 0.6335 3.7618 37 1 0.5669 0.6102 5.3967 38 1 0.0028 3.1091 3.7372 39 1 -0.9677 2.5375 5.1152 40 1 0.7063 3.0857 5.3721 41 1 5.7793 2.3080 4.2240 42 1 5.5979 0.7410 5.0486 43 1 6.0350 0.7937 3.3240 44 1 4.5923 3.7132 -1.5944 45 1 5.5492 3.0090 -0.2498 46 1 6.0482 2.8949 -3.2189 47 1 7.2206 2.8474 -1.8746 48 1 8.7787 2.6886 -4.5041 49 1 5.7241 0.1987 -0.4579 50 1 4.8211 -0.4349 -1.8679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691869275.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:10 Heat of formation + Delta-G solvation = 90.369251 kcal Electronic energy + Delta-G solvation = -30709.692305 eV Core-core repulsion = 26775.283122 eV Total energy + Delta-G solvation = -3934.409184 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.71380 -41.29454 -38.50841 -37.22056 -36.03245 -34.64447 -33.93793 -33.23597 -32.30322 -30.98065 -29.38116 -28.75696 -27.15668 -26.69863 -25.46863 -23.70849 -22.83139 -22.42074 -21.98881 -21.87536 -20.28348 -18.89424 -18.34994 -18.16506 -17.55520 -16.98812 -16.63900 -16.10794 -15.91077 -15.68153 -15.56320 -15.27008 -14.81385 -14.59990 -14.49882 -14.28645 -14.16929 -13.84427 -13.68365 -13.61764 -13.42403 -13.07879 -13.00390 -12.98380 -12.75309 -12.72745 -12.53295 -12.44048 -12.27796 -12.10366 -12.05938 -12.00622 -11.85963 -11.82116 -11.67852 -11.48816 -11.10182 -10.72724 -10.66450 -10.23188 -9.63042 -8.82133 -7.82133 -5.17640 0.24364 0.84393 1.21247 1.45288 1.50078 1.56095 1.87480 2.15315 2.52166 2.79655 3.34862 3.51516 3.73691 3.75707 3.91497 3.95114 3.96840 4.03629 4.08251 4.23627 4.25163 4.26322 4.43370 4.47092 4.54851 4.58870 4.70230 4.73003 4.73295 4.76329 4.82335 4.84059 4.92956 4.96329 5.00566 5.05913 5.11749 5.19134 5.23900 5.30573 5.32277 5.44241 5.48312 5.67082 5.69423 5.72717 5.78056 6.21030 6.36877 7.01828 7.11824 7.17623 7.78772 8.44853 9.28256 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.003090 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.724697 B = 9058.959004 C = 9817.307073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.103 3.897 4 N -0.586 5.586 5 C 0.597 3.403 6 O -0.543 6.543 7 C -0.067 4.067 8 N -0.229 5.229 9 N -0.132 5.132 10 C 0.119 3.881 11 C -0.165 4.165 12 N -0.298 5.298 13 C 0.047 3.953 14 C -0.067 4.067 15 C 0.152 3.848 16 H 0.115 0.885 17 C -0.137 4.137 18 C 0.197 3.803 19 N -0.622 5.622 20 C -0.243 4.243 21 H 0.079 0.921 22 C -0.067 4.067 23 N -0.952 5.952 24 Si 0.982 3.018 25 H -0.273 1.273 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.120 3.880 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.058 0.942 39 H 0.117 0.883 40 H 0.053 0.947 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.059 0.941 46 H 0.020 0.980 47 H -0.002 1.002 48 H 0.247 0.753 49 H 0.038 0.962 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.588 -0.493 18.412 29.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C -0.019 4.019 4 N -0.317 5.317 5 C 0.383 3.617 6 O -0.419 6.419 7 C -0.227 4.227 8 N -0.079 5.079 9 N -0.037 5.037 10 C 0.002 3.998 11 C -0.223 4.223 12 N -0.140 5.140 13 C -0.116 4.116 14 C -0.126 4.126 15 C 0.048 3.952 16 H 0.132 0.868 17 C -0.176 4.176 18 C 0.071 3.929 19 N -0.348 5.348 20 C -0.372 4.372 21 H 0.096 0.904 22 C -0.260 4.260 23 N -0.601 5.601 24 Si 0.809 3.191 25 H -0.199 1.199 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.006 4.006 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.152 0.848 37 H 0.147 0.853 38 H 0.077 0.923 39 H 0.136 0.864 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.104 0.896 45 H 0.078 0.922 46 H 0.038 0.962 47 H 0.017 0.983 48 H 0.056 0.944 49 H 0.055 0.945 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -24.058 -0.541 18.789 30.530 hybrid contribution 2.012 -0.313 -1.103 2.316 sum -22.046 -0.854 17.686 28.276 Atomic orbital electron populations 1.21588 0.92842 1.02187 1.02744 1.21772 0.97942 0.96109 1.00823 1.22205 0.76460 0.98368 1.04901 1.47792 1.08164 1.70836 1.04863 1.17046 0.85865 0.76672 0.82100 1.90811 1.14128 1.50556 1.86358 1.22744 0.90153 1.14018 0.95799 1.74479 1.15550 1.16265 1.01561 1.48866 1.08465 1.45810 1.00517 1.22653 0.73730 1.01652 1.01781 1.22173 1.03685 0.93603 1.02865 1.73921 0.92840 1.21212 1.26021 1.23451 0.97937 1.01808 0.88367 1.20217 0.85222 1.03980 1.03181 1.22132 0.92901 0.95112 0.85061 0.86760 1.23024 0.97091 0.97695 0.99755 1.20758 0.93801 0.83567 0.94769 1.44602 1.39720 1.02487 1.48029 1.19400 1.11135 0.90549 1.16088 0.90357 1.25676 1.01390 0.96951 1.01937 1.70189 1.38965 1.07612 1.43302 0.85111 0.78375 0.77225 0.78351 1.19898 1.21755 1.20680 1.22041 0.89730 0.94920 0.93869 0.91839 0.92379 0.91363 0.93279 0.93637 0.87649 0.88820 0.84822 0.85346 0.92255 0.86439 0.92768 0.89632 0.88918 0.90474 0.89592 0.92200 0.96204 0.98347 0.94357 0.94465 0.94787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.91 71.98 0.71 -1.15 16 2 C -0.13 -2.65 5.79 30.59 0.18 -2.47 16 3 C 0.10 2.29 4.98 86.38 0.43 2.73 16 4 N -0.59 -18.33 2.58 -793.56 -2.04 -20.38 16 5 C 0.60 20.83 6.91 86.77 0.60 21.43 16 6 O -0.54 -23.13 11.24 -3.90 -0.04 -23.17 16 7 C -0.07 -1.95 6.69 42.24 0.28 -1.67 16 8 N -0.23 -5.20 7.58 -48.16 -0.37 -5.56 16 9 N -0.13 -2.53 3.94 -187.51 -0.74 -3.27 16 10 C 0.12 0.95 7.24 86.38 0.63 1.58 16 11 C -0.16 -1.03 10.24 71.98 0.74 -0.29 16 12 N -0.30 -7.05 12.01 -46.58 -0.56 -7.61 16 13 C 0.05 1.29 7.39 43.32 0.32 1.61 16 14 C -0.07 -1.69 10.05 71.24 0.72 -0.97 16 15 C 0.15 5.67 3.54 46.38 0.16 5.84 16 16 H 0.11 3.81 7.84 -2.39 -0.02 3.80 16 17 C -0.14 -5.69 6.34 31.79 0.20 -5.49 16 18 C 0.20 10.62 5.37 86.73 0.47 11.08 16 19 N -0.62 -35.05 3.39 -691.99 -2.35 -37.40 16 20 C -0.24 -14.63 10.28 84.03 0.86 -13.77 16 21 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 22 C -0.07 -4.01 5.49 84.86 0.47 -3.55 16 23 N -0.95 -60.08 10.31 21.65 0.22 -59.86 16 24 Si 0.98 48.00 29.55 68.60 2.03 50.03 16 25 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 26 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 27 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 28 C 0.12 5.64 6.58 86.86 0.57 6.21 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.04 1.09 7.14 -2.38 -0.02 1.07 16 34 H 0.11 2.22 5.33 -2.38 -0.01 2.21 16 35 H 0.09 1.78 7.87 -2.38 -0.02 1.76 16 36 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 39 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.08 2.30 6.68 -2.39 -0.02 2.29 16 44 H 0.09 3.05 8.14 -2.39 -0.02 3.04 16 45 H 0.06 2.64 6.38 -2.39 -0.02 2.62 16 46 H 0.02 1.15 7.38 -2.39 -0.02 1.13 16 47 H 0.00 -0.11 7.50 -2.39 -0.02 -0.13 16 48 H 0.25 15.10 8.31 -92.70 -0.77 14.33 16 49 H 0.04 1.91 5.39 -2.39 -0.01 1.90 16 50 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -79.37 392.24 4.41 -74.96 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.93 Total: 11.15 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 7.33 Total: 21.11 kcal Atomic # 7 Polarization: -128.24 SS G_CDS: -5.83 Total: -134.08 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.04 Total: -23.17 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Total: -79.37 4.41 -74.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691869275.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.332 kcal (2) G-P(sol) polarization free energy of solvation -79.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds