Wall clock time and date at job start Tue Mar 31 2020 19:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46820 * 2 1 4 4 N 1.46503 * 109.47041 * 180.02562 * 3 2 1 5 5 C 1.34815 * 126.59461 * 124.97472 * 4 3 2 6 6 C 1.36596 * 106.84061 * 180.02562 * 5 4 3 7 7 C 1.47521 * 125.77020 * 180.02562 * 6 5 4 8 8 O 1.21595 * 120.00271 * 7.10242 * 7 6 5 9 9 N 1.34780 * 119.99864 * 187.10348 * 7 6 5 10 10 C 1.46929 * 120.62899 * 6.94141 * 9 7 6 11 11 C 1.53190 * 108.77398 * 126.36805 * 10 9 7 12 12 C 1.53041 * 109.31509 * 54.63436 * 11 10 9 13 13 H 1.08997 * 109.45890 * 58.63954 * 12 11 10 14 14 C 1.53003 * 109.45747 * 178.61263 * 12 11 10 15 15 C 1.53040 * 109.53683 * 298.63151 * 12 11 10 16 16 C 1.46924 * 120.62989 * 186.65743 * 9 7 6 17 17 H 1.08995 * 109.58766 * 113.84561 * 16 9 7 18 18 C 1.52997 * 109.58716 * 353.42042 * 16 9 7 19 19 N 1.46503 * 109.47240 * 68.56315 * 18 16 9 20 20 C 1.36935 * 119.99859 * 174.81900 * 19 18 16 21 21 H 1.07997 * 120.00262 * 359.97438 * 20 19 18 22 22 C 1.38818 * 119.99677 * 180.02562 * 20 19 18 23 23 N 1.31620 * 119.99927 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99760 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47288 * 89.99931 * 24 22 20 26 26 H 1.48503 * 109.46932 * 209.99713 * 24 22 20 27 27 H 1.48500 * 109.47506 * 329.99983 * 24 22 20 28 28 N 1.34404 * 108.45949 * 0.02562 * 6 5 4 29 29 N 1.28762 * 109.51903 * 359.97438 * 28 6 5 30 30 H 1.09005 * 109.46752 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47099 * 299.99886 * 1 2 3 32 32 H 1.08997 * 109.46977 * 60.00103 * 1 2 3 33 33 H 1.09005 * 109.47138 * 240.00254 * 2 1 3 34 34 H 1.08994 * 109.47474 * 119.99925 * 2 1 3 35 35 H 1.08999 * 109.47454 * 60.00362 * 3 2 1 36 36 H 1.08997 * 109.47262 * 299.99723 * 3 2 1 37 37 H 1.07995 * 126.58006 * 359.97438 * 5 4 3 38 38 H 1.09001 * 109.58219 * 246.15343 * 10 9 7 39 39 H 1.09001 * 109.59069 * 6.57885 * 10 9 7 40 40 H 1.09005 * 109.49493 * 174.58126 * 11 10 9 41 41 H 1.08993 * 109.49870 * 294.64325 * 11 10 9 42 42 H 1.08994 * 109.47296 * 60.00296 * 14 12 11 43 43 H 1.09004 * 109.46503 * 179.97438 * 14 12 11 44 44 H 1.08994 * 109.47211 * 299.99369 * 14 12 11 45 45 H 1.08999 * 109.49946 * 181.31467 * 15 12 11 46 46 H 1.09004 * 109.49626 * 301.38185 * 15 12 11 47 47 H 1.08999 * 109.47049 * 188.56596 * 18 16 9 48 48 H 1.08998 * 109.47067 * 308.56175 * 18 16 9 49 49 H 0.96995 * 119.99777 * 354.82183 * 19 18 16 50 50 H 0.96993 * 119.99712 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3083 2.0632 -0.8878 6 6 5.5940 1.7981 -0.5104 7 6 6.8098 2.2772 -1.1949 8 8 6.7192 3.0757 -2.1074 9 7 8.0212 1.8297 -0.8088 10 6 8.1400 0.7548 0.1858 11 6 9.0164 -0.3594 -0.3948 12 6 10.3545 0.2315 -0.8446 13 1 10.8466 0.7045 0.0052 14 6 11.2458 -0.8846 -1.3933 15 6 10.1118 1.2743 -1.9381 16 6 9.2477 2.4033 -1.3792 17 1 9.7997 2.9316 -0.6019 18 6 8.8848 3.3741 -2.5046 19 7 8.2233 4.5525 -1.9388 20 6 7.9006 5.6103 -2.7462 21 1 8.1341 5.5761 -3.8001 22 6 7.2743 6.7270 -2.2099 23 7 6.9902 6.7689 -0.9254 24 14 6.8335 8.1697 -3.3115 25 1 5.4673 7.9745 -3.8599 26 1 6.8748 9.4265 -2.5215 27 1 7.8078 8.2552 -4.4290 28 7 5.5641 1.0269 0.5900 29 7 4.3413 0.7964 0.9207 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9564 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.9953 2.6555 -1.7348 38 1 8.5999 1.1461 1.0933 39 1 7.1508 0.3591 0.4163 40 1 9.1918 -1.1187 0.3674 41 1 8.5121 -0.8112 -1.2490 42 1 10.7537 -1.3580 -2.2429 43 1 12.1988 -0.4637 -1.7142 44 1 11.4198 -1.6267 -0.6143 45 1 11.0668 1.6779 -2.2744 46 1 9.5979 0.8074 -2.7784 47 1 9.7915 3.6815 -3.0257 48 1 8.2118 2.8815 -3.2064 49 1 8.0139 4.5833 -0.9922 50 1 6.5522 7.5490 -0.5508 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692092504.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:14 Heat of formation + Delta-G solvation = 111.607382 kcal Electronic energy + Delta-G solvation = -30501.172379 eV Core-core repulsion = 26567.684150 eV Total energy + Delta-G solvation = -3933.488229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.99736 -39.81172 -37.13151 -36.13046 -34.39871 -33.56594 -32.61255 -31.93419 -30.34840 -29.71128 -28.13015 -27.13154 -25.35240 -23.68318 -23.07558 -22.72914 -22.43605 -21.41263 -20.96854 -19.87737 -19.03654 -17.36746 -16.69954 -16.13538 -15.90951 -15.47463 -15.23962 -14.79130 -14.72506 -14.35589 -14.07952 -13.97791 -13.66437 -13.61495 -13.39464 -13.08886 -12.87549 -12.71210 -12.69193 -12.38909 -12.04882 -12.00440 -11.89136 -11.70044 -11.58726 -11.45220 -11.28166 -11.08750 -10.80981 -10.73863 -10.68618 -10.56504 -10.24490 -10.18689 -9.83756 -9.65792 -9.45970 -8.99113 -8.67852 -8.35973 -7.91298 -6.46131 -5.52004 -2.71225 1.38120 2.12008 2.15534 3.52203 3.55559 3.59872 3.61743 3.98354 4.17661 4.42362 4.50913 4.70511 4.76667 4.88160 4.91816 4.92928 4.99244 5.04553 5.13885 5.22562 5.28872 5.39006 5.48163 5.53201 5.58228 5.64888 5.70035 5.71840 5.75016 5.80381 5.82579 5.84345 5.89896 5.95948 6.10902 6.22167 6.23476 6.27624 6.30946 6.48196 6.53171 6.58887 6.65206 6.82655 7.07816 7.42407 7.90202 8.04606 8.22786 8.65864 9.01569 9.76940 10.38280 10.72736 11.71780 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006903 B = 0.005023 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4055.043844 B = 5572.761347 C = 9125.808693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.122 3.878 4 N -0.363 5.363 5 C 0.087 3.913 6 C -0.077 4.077 7 C 0.559 3.441 8 O -0.445 6.445 9 N -0.601 5.601 10 C 0.089 3.911 11 C -0.126 4.126 12 C -0.093 4.093 13 H 0.070 0.930 14 C -0.144 4.144 15 C -0.120 4.120 16 C 0.143 3.857 17 H 0.068 0.932 18 C 0.159 3.841 19 N -0.696 5.696 20 C -0.204 4.204 21 H 0.065 0.935 22 C -0.023 4.023 23 N -0.938 5.938 24 Si 0.900 3.100 25 H -0.295 1.295 26 H -0.295 1.295 27 H -0.285 1.285 28 N -0.213 5.213 29 N -0.080 5.080 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.202 0.798 38 H 0.057 0.943 39 H 0.125 0.875 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.015 0.985 48 H 0.043 0.957 49 H 0.380 0.620 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.904 -18.731 2.427 19.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.001 3.999 4 N -0.149 5.149 5 C -0.068 4.068 6 C -0.216 4.216 7 C 0.342 3.658 8 O -0.312 6.312 9 N -0.338 5.338 10 C -0.035 4.035 11 C -0.164 4.164 12 C -0.112 4.112 13 H 0.088 0.912 14 C -0.202 4.202 15 C -0.159 4.159 16 C 0.040 3.960 17 H 0.086 0.914 18 C 0.032 3.968 19 N -0.339 5.339 20 C -0.337 4.337 21 H 0.083 0.917 22 C -0.217 4.217 23 N -0.589 5.589 24 Si 0.733 3.267 25 H -0.223 1.223 26 H -0.222 1.222 27 H -0.211 1.211 28 N -0.086 5.086 29 N -0.060 5.060 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.218 0.782 38 H 0.076 0.924 39 H 0.142 0.858 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.032 0.968 48 H 0.060 0.940 49 H 0.214 0.786 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.984 -19.001 2.983 20.143 hybrid contribution -0.579 1.543 -0.944 1.900 sum -6.563 -17.458 2.039 18.762 Atomic orbital electron populations 1.21705 0.94073 1.02632 1.02370 1.21816 0.96745 0.94850 1.04039 1.22081 0.73096 0.99659 1.05078 1.50389 1.08415 1.35827 1.20295 1.23369 0.90281 0.96917 0.96250 1.21860 0.95281 1.06481 0.98004 1.16869 0.81362 0.82381 0.85162 1.91208 1.84492 1.28920 1.26554 1.47531 1.04763 1.38165 1.43325 1.22340 1.03533 0.87258 0.90399 1.21974 0.95696 0.97926 1.00837 1.21137 0.95736 0.95906 0.98398 0.91188 1.21815 0.99371 0.98238 1.00730 1.21886 0.99864 0.96020 0.98116 1.21399 0.84512 0.93369 0.96717 0.91391 1.20937 0.94519 0.87874 0.93503 1.42297 1.69083 1.13967 1.08513 1.19175 1.29570 0.93284 0.91624 0.91669 1.24602 1.02775 0.98475 0.95845 1.69671 1.48820 1.29751 1.10660 0.86256 0.78145 0.82795 0.79506 1.22275 1.22214 1.21062 1.74321 1.11895 1.11451 1.10906 1.81846 0.93899 1.18174 1.12050 0.91814 0.92117 0.92229 0.91143 0.90145 0.88582 0.87852 0.78157 0.92430 0.85821 0.91425 0.92044 0.92910 0.92819 0.92992 0.90990 0.91619 0.96756 0.93970 0.78645 0.94129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.14 -0.98 6.14 -26.73 -0.16 -1.14 16 3 C 0.12 1.02 6.54 -4.04 -0.03 0.99 16 4 N -0.36 -4.71 3.69 -61.06 -0.23 -4.94 16 5 C 0.09 1.33 11.28 -16.83 -0.19 1.14 16 6 C -0.08 -1.37 6.70 -83.55 -0.56 -1.93 16 7 C 0.56 11.29 7.01 -12.47 -0.09 11.21 16 8 O -0.44 -10.61 10.66 5.28 0.06 -10.55 16 9 N -0.60 -10.71 2.98 -166.70 -0.50 -11.20 16 10 C 0.09 1.31 6.09 -3.71 -0.02 1.29 16 11 C -0.13 -1.53 5.36 -26.61 -0.14 -1.67 16 12 C -0.09 -1.10 2.68 -90.58 -0.24 -1.35 16 13 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 14 C -0.14 -1.42 9.19 37.16 0.34 -1.08 16 15 C -0.12 -1.67 4.62 -26.83 -0.12 -1.80 16 16 C 0.14 2.56 2.92 -67.82 -0.20 2.36 16 17 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 18 C 0.16 3.49 4.86 -4.04 -0.02 3.47 16 19 N -0.70 -18.75 3.22 -59.91 -0.19 -18.95 16 20 C -0.20 -6.03 9.71 -15.06 -0.15 -6.18 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.02 -0.68 5.50 -17.43 -0.10 -0.78 16 23 N -0.94 -29.76 13.06 55.49 0.72 -29.03 16 24 Si 0.90 23.52 29.55 -169.99 -5.02 18.49 16 25 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 26 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 27 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 28 N -0.21 -3.57 8.79 32.85 0.29 -3.28 16 29 N -0.08 -1.23 13.65 60.35 0.82 -0.41 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.65 8.08 -51.93 -0.42 0.23 16 37 H 0.20 2.72 8.06 -52.49 -0.42 2.30 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.12 1.90 4.10 -80.27 -0.33 1.57 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.01 0.32 8.13 -51.93 -0.42 -0.10 16 48 H 0.04 0.99 6.34 -51.93 -0.33 0.66 16 49 H 0.38 11.02 6.99 -40.82 -0.29 10.73 16 50 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 393.53 15.07 5.93 5.93 Total: -1.00 -35.31 393.53 -7.94 -43.25 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -8.52 Total: 6.56 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -1.31 Total: 4.12 kcal Atomic # 7 Polarization: -68.73 SS G_CDS: 0.92 Total: -67.81 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.06 Total: -10.55 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.02 Total: 18.49 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.31 -7.94 -43.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692092504.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.857 kcal (2) G-P(sol) polarization free energy of solvation -35.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds