Wall clock time and date at job start Tue Mar 31 2020 19:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46820 * 2 1 4 4 N 1.46503 * 109.47041 * 180.02562 * 3 2 1 5 5 C 1.34815 * 126.59461 * 124.97472 * 4 3 2 6 6 C 1.36596 * 106.84061 * 180.02562 * 5 4 3 7 7 C 1.47521 * 125.77020 * 180.02562 * 6 5 4 8 8 O 1.21595 * 120.00271 * 7.10242 * 7 6 5 9 9 N 1.34780 * 119.99864 * 187.10348 * 7 6 5 10 10 C 1.46929 * 120.62899 * 6.94141 * 9 7 6 11 11 C 1.53190 * 108.77398 * 126.36805 * 10 9 7 12 12 C 1.53041 * 109.31509 * 54.63436 * 11 10 9 13 13 H 1.08997 * 109.45890 * 58.63954 * 12 11 10 14 14 C 1.53003 * 109.45747 * 178.61263 * 12 11 10 15 15 C 1.53040 * 109.53683 * 298.63151 * 12 11 10 16 16 C 1.46924 * 120.62989 * 186.65743 * 9 7 6 17 17 H 1.08995 * 109.58766 * 113.84561 * 16 9 7 18 18 C 1.52997 * 109.58716 * 353.42042 * 16 9 7 19 19 N 1.46503 * 109.47240 * 68.56315 * 18 16 9 20 20 C 1.36935 * 119.99859 * 174.81900 * 19 18 16 21 21 H 1.07997 * 120.00262 * 359.97438 * 20 19 18 22 22 C 1.38818 * 119.99677 * 180.02562 * 20 19 18 23 23 N 1.31620 * 119.99927 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99760 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47288 * 89.99931 * 24 22 20 26 26 H 1.48503 * 109.46932 * 209.99713 * 24 22 20 27 27 H 1.48500 * 109.47506 * 329.99983 * 24 22 20 28 28 N 1.34404 * 108.45949 * 0.02562 * 6 5 4 29 29 N 1.28762 * 109.51903 * 359.97438 * 28 6 5 30 30 H 1.09005 * 109.46752 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47099 * 299.99886 * 1 2 3 32 32 H 1.08997 * 109.46977 * 60.00103 * 1 2 3 33 33 H 1.09005 * 109.47138 * 240.00254 * 2 1 3 34 34 H 1.08994 * 109.47474 * 119.99925 * 2 1 3 35 35 H 1.08999 * 109.47454 * 60.00362 * 3 2 1 36 36 H 1.08997 * 109.47262 * 299.99723 * 3 2 1 37 37 H 1.07995 * 126.58006 * 359.97438 * 5 4 3 38 38 H 1.09001 * 109.58219 * 246.15343 * 10 9 7 39 39 H 1.09001 * 109.59069 * 6.57885 * 10 9 7 40 40 H 1.09005 * 109.49493 * 174.58126 * 11 10 9 41 41 H 1.08993 * 109.49870 * 294.64325 * 11 10 9 42 42 H 1.08994 * 109.47296 * 60.00296 * 14 12 11 43 43 H 1.09004 * 109.46503 * 179.97438 * 14 12 11 44 44 H 1.08994 * 109.47211 * 299.99369 * 14 12 11 45 45 H 1.08999 * 109.49946 * 181.31467 * 15 12 11 46 46 H 1.09004 * 109.49626 * 301.38185 * 15 12 11 47 47 H 1.08999 * 109.47049 * 188.56596 * 18 16 9 48 48 H 1.08998 * 109.47067 * 308.56175 * 18 16 9 49 49 H 0.96995 * 119.99777 * 354.82183 * 19 18 16 50 50 H 0.96993 * 119.99712 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3083 2.0632 -0.8878 6 6 5.5940 1.7981 -0.5104 7 6 6.8098 2.2772 -1.1949 8 8 6.7192 3.0757 -2.1074 9 7 8.0212 1.8297 -0.8088 10 6 8.1400 0.7548 0.1858 11 6 9.0164 -0.3594 -0.3948 12 6 10.3545 0.2315 -0.8446 13 1 10.8466 0.7045 0.0052 14 6 11.2458 -0.8846 -1.3933 15 6 10.1118 1.2743 -1.9381 16 6 9.2477 2.4033 -1.3792 17 1 9.7997 2.9316 -0.6019 18 6 8.8848 3.3741 -2.5046 19 7 8.2233 4.5525 -1.9388 20 6 7.9006 5.6103 -2.7462 21 1 8.1341 5.5761 -3.8001 22 6 7.2743 6.7270 -2.2099 23 7 6.9902 6.7689 -0.9254 24 14 6.8335 8.1697 -3.3115 25 1 5.4673 7.9745 -3.8599 26 1 6.8748 9.4265 -2.5215 27 1 7.8078 8.2552 -4.4290 28 7 5.5641 1.0269 0.5900 29 7 4.3413 0.7964 0.9207 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9564 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.9953 2.6555 -1.7348 38 1 8.5999 1.1461 1.0933 39 1 7.1508 0.3591 0.4163 40 1 9.1918 -1.1187 0.3674 41 1 8.5121 -0.8112 -1.2490 42 1 10.7537 -1.3580 -2.2429 43 1 12.1988 -0.4637 -1.7142 44 1 11.4198 -1.6267 -0.6143 45 1 11.0668 1.6779 -2.2744 46 1 9.5979 0.8074 -2.7784 47 1 9.7915 3.6815 -3.0257 48 1 8.2118 2.8815 -3.2064 49 1 8.0139 4.5833 -0.9922 50 1 6.5522 7.5490 -0.5508 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692092504.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:12 Heat of formation + Delta-G solvation = 88.985995 kcal Electronic energy + Delta-G solvation = -30502.153316 eV Core-core repulsion = 26567.684150 eV Total energy + Delta-G solvation = -3934.469166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.22916 -41.24245 -38.46367 -37.00863 -36.27373 -34.78533 -33.87833 -33.43808 -31.70076 -31.42811 -29.23140 -27.95192 -27.11652 -25.04582 -24.39466 -24.08892 -23.67071 -22.49925 -22.24169 -21.03836 -20.31916 -19.13320 -18.23635 -17.21052 -17.15478 -16.89636 -16.64375 -16.13940 -15.86185 -15.77558 -15.41828 -15.28211 -15.11044 -14.78060 -14.57681 -14.53178 -14.29440 -14.00300 -13.64773 -13.59358 -13.23334 -13.07914 -12.95381 -12.83808 -12.77737 -12.64804 -12.53866 -12.43590 -12.29036 -12.09729 -11.96910 -11.78947 -11.75352 -11.59396 -11.28331 -11.20146 -10.89213 -10.82770 -10.24987 -10.01103 -9.41810 -8.59398 -7.80153 -4.99816 0.19015 0.75939 1.12570 1.46398 1.49196 1.57212 2.13694 2.49356 2.64746 3.25074 3.34843 3.53094 3.71616 3.81351 3.81654 3.90813 3.99536 4.06988 4.14625 4.15402 4.22034 4.32811 4.40005 4.46121 4.49094 4.55537 4.58324 4.69482 4.79739 4.83203 4.83733 4.92176 4.97357 5.07486 5.09711 5.14114 5.15650 5.17491 5.25608 5.30575 5.33735 5.40238 5.46623 5.52430 5.56366 5.60178 5.93129 6.39792 6.61071 6.94227 7.45057 7.50547 8.24952 8.48931 9.44555 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006903 B = 0.005023 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4055.043844 B = 5572.761347 C = 9125.808693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C 0.109 3.891 4 N -0.346 5.346 5 C 0.093 3.907 6 C -0.108 4.108 7 C 0.559 3.441 8 O -0.496 6.496 9 N -0.599 5.599 10 C 0.085 3.915 11 C -0.118 4.118 12 C -0.089 4.089 13 H 0.072 0.928 14 C -0.138 4.138 15 C -0.111 4.111 16 C 0.147 3.853 17 H 0.059 0.941 18 C 0.163 3.837 19 N -0.705 5.705 20 C -0.208 4.208 21 H 0.065 0.935 22 C -0.083 4.083 23 N -0.975 5.975 24 Si 0.967 3.033 25 H -0.292 1.292 26 H -0.298 1.298 27 H -0.272 1.272 28 N -0.219 5.219 29 N -0.086 5.086 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.129 0.871 37 H 0.214 0.786 38 H 0.058 0.942 39 H 0.122 0.878 40 H 0.093 0.907 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.062 0.938 47 H 0.017 0.983 48 H 0.029 0.971 49 H 0.366 0.634 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.309 -20.343 2.250 21.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.167 4.167 3 C -0.010 4.010 4 N -0.132 5.132 5 C -0.064 4.064 6 C -0.247 4.247 7 C 0.344 3.656 8 O -0.367 6.367 9 N -0.335 5.335 10 C -0.038 4.038 11 C -0.156 4.156 12 C -0.108 4.108 13 H 0.091 0.909 14 C -0.195 4.195 15 C -0.150 4.150 16 C 0.044 3.956 17 H 0.077 0.923 18 C 0.037 3.963 19 N -0.346 5.346 20 C -0.341 4.341 21 H 0.083 0.917 22 C -0.274 4.274 23 N -0.629 5.629 24 Si 0.798 3.202 25 H -0.220 1.220 26 H -0.225 1.225 27 H -0.197 1.197 28 N -0.092 5.092 29 N -0.066 5.066 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.128 0.872 36 H 0.147 0.853 37 H 0.231 0.769 38 H 0.076 0.924 39 H 0.139 0.861 40 H 0.112 0.888 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.081 0.919 47 H 0.035 0.965 48 H 0.047 0.953 49 H 0.197 0.803 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.374 -20.688 2.811 21.829 hybrid contribution -0.556 1.913 -0.845 2.164 sum -6.931 -18.774 1.966 20.109 Atomic orbital electron populations 1.21682 0.92203 1.03243 1.03156 1.21761 0.98174 0.93633 1.03175 1.22630 0.70230 1.01088 1.07077 1.50698 1.09823 1.33988 1.18661 1.23566 0.89869 0.96425 0.96549 1.21712 0.95374 1.08404 0.99237 1.17285 0.82541 0.81398 0.84394 1.91174 1.85386 1.31308 1.28839 1.47703 1.04167 1.38294 1.43316 1.22516 1.04225 0.87174 0.89867 1.21932 0.95117 0.97230 1.01314 1.21117 0.96032 0.95954 0.97647 0.90945 1.21754 0.99009 0.97603 1.01174 1.21834 0.99344 0.95133 0.98651 1.21324 0.85036 0.94075 0.95187 0.92349 1.20956 0.93462 0.87197 0.94710 1.42367 1.69676 1.14964 1.07553 1.19507 1.28654 0.94067 0.91840 0.91717 1.25355 1.03604 1.01244 0.97213 1.69848 1.50346 1.30252 1.12414 0.85201 0.77934 0.79173 0.77926 1.21954 1.22487 1.19735 1.74307 1.12696 1.11551 1.10665 1.81754 0.93816 1.18410 1.12581 0.91331 0.91483 0.91296 0.91713 0.91333 0.87200 0.85273 0.76901 0.92377 0.86126 0.88831 0.92356 0.92793 0.92150 0.91445 0.89716 0.91913 0.96494 0.95327 0.80307 0.94788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 71.98 0.71 -0.46 16 2 C -0.13 -1.63 6.14 30.60 0.19 -1.45 16 3 C 0.11 1.60 6.54 86.38 0.56 2.17 16 4 N -0.35 -8.66 3.69 -347.10 -1.28 -9.94 16 5 C 0.09 2.82 11.28 83.85 0.95 3.76 16 6 C -0.11 -3.92 6.70 40.82 0.27 -3.64 16 7 C 0.56 23.39 7.01 86.69 0.61 24.00 16 8 O -0.50 -24.70 10.66 -4.01 -0.04 -24.74 16 9 N -0.60 -21.76 2.98 -799.56 -2.38 -24.14 16 10 C 0.09 2.48 6.09 86.36 0.53 3.00 16 11 C -0.12 -2.62 5.36 30.67 0.16 -2.46 16 12 C -0.09 -1.91 2.68 -10.77 -0.03 -1.94 16 13 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 14 C -0.14 -2.28 9.19 71.98 0.66 -1.62 16 15 C -0.11 -2.98 4.62 30.53 0.14 -2.83 16 16 C 0.15 5.33 2.92 44.83 0.13 5.46 16 17 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 18 C 0.16 7.38 4.86 86.38 0.42 7.80 16 19 N -0.71 -39.39 3.22 -343.45 -1.10 -40.49 16 20 C -0.21 -12.59 9.71 84.04 0.82 -11.77 16 21 H 0.06 3.83 7.83 -2.91 -0.02 3.80 16 22 C -0.08 -5.13 5.50 84.86 0.47 -4.66 16 23 N -0.98 -63.63 13.06 21.65 0.28 -63.34 16 24 Si 0.97 49.26 29.55 68.60 2.03 51.28 16 25 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 26 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 27 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 28 N -0.22 -7.38 8.79 -49.99 -0.44 -7.82 16 29 N -0.09 -2.59 13.65 37.02 0.51 -2.09 16 30 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.45 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.90 8.14 -2.38 -0.02 0.89 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 35 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.13 1.29 8.08 -2.39 -0.02 1.27 16 37 H 0.21 5.79 8.06 -2.91 -0.02 5.77 16 38 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.12 3.68 4.10 -39.06 -0.16 3.52 16 40 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 44 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.02 0.76 8.13 -2.39 -0.02 0.75 16 48 H 0.03 1.40 6.34 -2.39 -0.02 1.39 16 49 H 0.37 22.14 6.99 -92.71 -0.65 21.49 16 50 H 0.24 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -78.82 393.53 4.29 -74.53 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: 0.13 Total: 31.40 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 6.59 Total: 15.35 kcal Atomic # 7 Polarization: -143.40 SS G_CDS: -4.42 Total: -147.82 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.04 Total: -24.74 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 2.03 Total: 51.28 kcal Total: -78.82 4.29 -74.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692092504.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.517 kcal (2) G-P(sol) polarization free energy of solvation -78.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds