Wall clock time and date at job start Tue Mar 31 2020 18:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47138 * 2 1 4 4 C 1.53001 * 109.47160 * 239.99843 * 2 1 3 5 5 N 1.46502 * 109.46754 * 120.00061 * 2 1 3 6 6 C 1.34585 * 125.74867 * 74.99887 * 5 2 1 7 7 N 1.30866 * 107.62521 * 179.97438 * 6 5 2 8 8 C 1.34552 * 107.26965 * 359.97438 * 7 6 5 9 9 C 1.47872 * 126.04716 * 179.97438 * 8 7 6 10 10 O 1.21553 * 119.99675 * 180.02562 * 9 8 7 11 11 N 1.34776 * 119.99836 * 0.02562 * 9 8 7 12 12 C 1.46508 * 119.99573 * 174.90435 * 11 9 8 13 13 C 1.52998 * 110.01736 * 65.17568 * 12 11 9 14 14 N 1.46499 * 109.47142 * 55.16650 * 13 12 11 15 15 C 1.36936 * 120.00259 * 174.90319 * 14 13 12 16 16 H 1.07998 * 120.00036 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00464 * 180.02562 * 15 14 13 18 18 N 1.31624 * 119.99713 * 359.72430 * 17 15 14 19 19 Si 1.86796 * 120.00586 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47109 * 59.99737 * 19 17 15 21 21 H 1.48492 * 109.47357 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46772 * 300.00271 * 19 17 15 23 23 C 1.54260 * 110.07059 * 186.59087 * 12 11 9 24 24 C 1.54894 * 104.19267 * 95.69800 * 23 12 11 25 25 C 1.54888 * 102.75119 * 37.94199 * 24 23 12 26 26 C 1.53874 * 110.03210 * 303.78295 * 12 11 9 27 27 N 1.28853 * 125.74832 * 255.30750 * 5 2 1 28 28 H 1.09004 * 109.46965 * 300.00257 * 1 2 3 29 29 H 1.09005 * 109.47257 * 59.99675 * 1 2 3 30 30 H 1.08993 * 109.47411 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46916 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.46980 * 299.99781 * 3 2 1 33 33 H 1.08996 * 109.47048 * 60.00562 * 3 2 1 34 34 H 1.09001 * 109.46867 * 300.00620 * 4 2 1 35 35 H 1.09006 * 109.47153 * 59.99990 * 4 2 1 36 36 H 1.08998 * 109.47433 * 180.02562 * 4 2 1 37 37 H 1.08000 * 126.18901 * 0.02562 * 6 5 2 38 38 H 0.96993 * 120.00337 * 354.90972 * 11 9 8 39 39 H 1.09002 * 109.47135 * 295.17411 * 13 12 11 40 40 H 1.08997 * 109.47285 * 175.17138 * 13 12 11 41 41 H 0.96998 * 120.00145 * 354.91308 * 14 13 12 42 42 H 0.97000 * 120.00071 * 180.02562 * 18 17 15 43 43 H 1.08996 * 110.48620 * 214.37091 * 23 12 11 44 44 H 1.08997 * 110.48801 * 337.02131 * 23 12 11 45 45 H 1.08999 * 110.75950 * 279.62334 * 24 23 12 46 46 H 1.09004 * 110.75460 * 156.25838 * 24 23 12 47 47 H 1.08998 * 110.48761 * 203.37808 * 25 24 23 48 48 H 1.09002 * 110.48754 * 80.72967 * 25 24 23 49 49 H 1.09000 * 110.03407 * 359.95562 * 26 12 11 50 50 H 1.09005 * 110.02989 * 121.38262 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0138 -2.0221 1.3923 7 7 2.5281 -2.2504 2.5738 8 6 2.8506 -1.0576 3.1063 9 6 3.4617 -0.8340 4.4342 10 8 3.7078 0.2963 4.8073 11 7 3.7457 -1.8836 5.2305 12 6 4.4520 -1.6723 6.4966 13 6 3.5833 -0.8491 7.4498 14 7 2.2855 -1.5072 7.6193 15 6 1.3758 -1.0074 8.5125 16 1 1.6149 -0.1278 9.0918 17 6 0.1463 -1.6312 8.6735 18 7 -0.1474 -2.7000 7.9636 19 14 -1.0950 -0.9490 9.8914 20 1 -1.4460 0.4434 9.5130 21 1 -2.3185 -1.7903 9.8750 22 1 -0.5068 -0.9580 11.2550 23 6 4.8024 -3.0298 7.1402 24 6 6.2583 -3.3008 6.6861 25 6 6.9007 -1.8924 6.7393 26 6 5.7860 -0.9492 6.2417 27 7 2.5192 -0.1253 2.2401 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1393 36 1 3.1300 -0.7217 -1.2490 37 1 1.6519 -2.7675 0.6995 38 1 3.4826 -2.7787 4.9655 39 1 3.4337 0.1480 7.0356 40 1 4.0797 -0.7700 8.4170 41 1 2.0705 -2.2970 7.0989 42 1 -1.0067 -3.1357 8.0758 43 1 4.7481 -2.9622 8.2267 44 1 4.1364 -3.8100 6.7717 45 1 6.2790 -3.6967 5.6708 46 1 6.7583 -3.9797 7.3769 47 1 7.7659 -1.8426 6.0782 48 1 7.1851 -1.6411 7.7611 49 1 5.9084 -0.7561 5.1759 50 1 5.8146 -0.0117 6.7971 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698632987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:19 Heat of formation + Delta-G solvation = 61.307494 kcal Electronic energy + Delta-G solvation = -30258.980871 eV Core-core repulsion = 26323.311475 eV Total energy + Delta-G solvation = -3935.669396 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.39629 -39.86111 -37.71855 -37.09470 -34.19107 -33.22295 -32.36689 -31.12387 -30.63625 -28.53020 -28.04413 -27.93100 -27.76493 -24.71147 -24.09166 -22.96494 -22.07596 -20.75878 -20.39296 -20.08394 -18.73524 -17.71634 -16.96678 -16.51436 -16.49907 -15.87524 -15.13192 -14.86810 -14.54693 -14.53639 -14.34950 -13.96320 -13.91612 -13.54186 -13.10431 -13.09150 -12.92505 -12.80671 -12.70548 -12.56980 -12.23272 -12.05816 -11.78341 -11.72851 -11.46013 -11.33879 -11.06804 -10.85810 -10.78204 -10.72758 -10.60614 -10.37342 -10.31803 -10.30222 -10.25940 -9.97033 -9.62837 -9.52187 -9.39260 -8.70420 -8.43231 -6.73400 -5.62862 -2.89040 1.61942 2.11945 2.29999 3.41136 3.52512 3.55849 3.57774 3.81822 3.99557 4.23101 4.27244 4.34664 4.68453 4.71360 4.81097 4.94723 4.96464 4.97290 5.11152 5.17473 5.18394 5.28539 5.29522 5.37883 5.49862 5.64608 5.68805 5.72403 5.75209 5.78777 5.88939 5.90534 6.00907 6.08135 6.13936 6.17019 6.32099 6.39697 6.44763 6.50460 6.59413 6.61122 6.65253 6.70791 7.03521 7.23481 7.82766 7.91479 8.24659 8.56376 8.69974 9.67489 10.27281 10.63259 11.60190 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008903 B = 0.003964 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.381939 B = 7062.748403 C = 9237.309523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.168 3.832 3 C -0.148 4.148 4 C -0.159 4.159 5 N -0.296 5.296 6 C 0.184 3.816 7 N -0.480 5.480 8 C 0.148 3.852 9 C 0.620 3.380 10 O -0.515 6.515 11 N -0.689 5.689 12 C 0.171 3.829 13 C 0.144 3.856 14 N -0.726 5.726 15 C -0.230 4.230 16 H 0.068 0.932 17 C -0.016 4.016 18 N -0.935 5.935 19 Si 0.904 3.096 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.287 1.287 23 C -0.117 4.117 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.118 4.118 27 N -0.250 5.250 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.219 0.781 38 H 0.406 0.594 39 H 0.038 0.962 40 H 0.028 0.972 41 H 0.383 0.617 42 H 0.253 0.747 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.066 0.934 49 H 0.066 0.934 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.768 0.151 -20.444 22.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.086 3.914 3 C -0.206 4.206 4 C -0.217 4.217 5 N -0.093 5.093 6 C -0.111 4.111 7 N -0.205 5.205 8 C -0.132 4.132 9 C 0.402 3.598 10 O -0.387 6.387 11 N -0.341 5.341 12 C 0.085 3.915 13 C 0.016 3.984 14 N -0.370 5.370 15 C -0.362 4.362 16 H 0.086 0.914 17 C -0.212 4.212 18 N -0.585 5.585 19 Si 0.736 3.264 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.214 1.214 23 C -0.154 4.154 24 C -0.163 4.163 25 C -0.161 4.161 26 C -0.157 4.157 27 N -0.088 5.088 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.235 0.765 38 H 0.242 0.758 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.216 0.784 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.037 1.462 -19.741 21.761 hybrid contribution -1.401 -0.534 0.003 1.499 sum 7.636 0.927 -19.738 21.184 Atomic orbital electron populations 1.22277 0.91806 1.03722 1.04146 1.21108 0.95325 0.94277 0.80731 1.21989 1.02460 0.92379 1.03765 1.22247 1.02571 1.01165 0.95695 1.47737 1.42049 1.06203 1.13328 1.26254 1.02110 0.86419 0.96341 1.71283 1.16330 1.26176 1.06720 1.23939 1.05653 0.85429 0.98157 1.16141 0.77833 0.85131 0.80729 1.90787 1.52495 1.22426 1.72994 1.45717 1.58435 1.09781 1.20151 1.21308 0.91294 0.96073 0.82792 1.21176 0.87104 0.95574 0.94544 1.42212 1.12575 1.33467 1.48747 1.19200 0.94842 1.08186 1.13924 0.91422 1.24676 0.97883 0.98204 1.00398 1.69655 1.23047 1.21896 1.43858 0.86297 0.81070 0.77969 0.81073 1.21481 1.21838 1.21373 1.22580 0.95719 0.95411 1.01733 1.22539 0.95967 0.96777 1.00999 1.22379 0.97562 0.95156 1.01028 1.22431 0.92815 0.98740 1.01720 1.74280 1.13689 1.25370 0.95453 0.91042 0.89740 0.91298 0.91346 0.90479 0.90401 0.91142 0.89464 0.91227 0.76501 0.75839 0.94450 0.95433 0.78373 0.93757 0.89470 0.90795 0.91747 0.91641 0.92101 0.91544 0.91532 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 8.72 37.16 0.32 -0.83 16 2 C 0.17 1.38 1.23 -131.82 -0.16 1.22 16 3 C -0.15 -1.25 8.05 37.16 0.30 -0.95 16 4 C -0.16 -0.79 8.28 37.16 0.31 -0.48 16 5 N -0.30 -3.72 3.16 -49.84 -0.16 -3.88 16 6 C 0.18 2.24 11.71 -90.48 -1.06 1.18 16 7 N -0.48 -7.77 11.10 -12.36 -0.14 -7.91 16 8 C 0.15 2.76 7.96 -156.35 -1.24 1.52 16 9 C 0.62 12.67 6.87 -12.32 -0.08 12.58 16 10 O -0.51 -11.82 14.35 5.32 0.08 -11.74 16 11 N -0.69 -12.75 4.50 -47.49 -0.21 -12.97 16 12 C 0.17 3.08 0.57 -130.70 -0.07 3.01 16 13 C 0.14 3.26 4.64 -4.04 -0.02 3.24 16 14 N -0.73 -19.46 5.27 -59.91 -0.32 -19.77 16 15 C -0.23 -6.83 9.99 -15.06 -0.15 -6.98 16 16 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 17 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 18 N -0.94 -29.25 13.06 55.49 0.72 -28.52 16 19 Si 0.90 23.53 29.55 -169.99 -5.02 18.51 16 20 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 21 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 C -0.12 -1.85 5.74 -25.07 -0.14 -1.99 16 24 C -0.13 -1.58 6.91 -24.74 -0.17 -1.75 16 25 C -0.12 -1.57 6.83 -25.07 -0.17 -1.74 16 26 C -0.12 -1.88 5.22 -25.61 -0.13 -2.01 16 27 N -0.25 -4.28 11.09 32.07 0.36 -3.92 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.84 8.02 -51.93 -0.42 0.42 16 34 H 0.07 0.27 7.34 -51.93 -0.38 -0.11 16 35 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.22 1.53 7.53 -52.49 -0.39 1.13 16 38 H 0.41 7.10 7.95 -40.82 -0.32 6.78 16 39 H 0.04 0.94 6.55 -51.93 -0.34 0.60 16 40 H 0.03 0.61 8.04 -51.93 -0.42 0.20 16 41 H 0.38 10.61 7.19 -40.82 -0.29 10.32 16 42 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 43 H 0.09 1.47 7.78 -51.93 -0.40 1.07 16 44 H 0.07 1.19 7.70 -51.93 -0.40 0.79 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.07 1.11 6.99 -51.93 -0.36 0.75 16 50 H 0.07 1.22 7.67 -51.93 -0.40 0.83 16 LS Contribution 400.10 15.07 6.03 6.03 Total: -1.00 -37.11 400.10 -9.57 -46.68 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -8.33 Total: 12.09 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -2.58 Total: 5.42 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: 0.26 Total: -76.98 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -5.02 Total: 18.51 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.11 -9.57 -46.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698632987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.984 kcal (2) G-P(sol) polarization free energy of solvation -37.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds