Wall clock time and date at job start Tue Mar 31 2020 18:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47138 * 2 1 4 4 C 1.53001 * 109.47160 * 239.99843 * 2 1 3 5 5 N 1.46502 * 109.46754 * 120.00061 * 2 1 3 6 6 C 1.34585 * 125.74867 * 74.99887 * 5 2 1 7 7 N 1.30866 * 107.62521 * 179.97438 * 6 5 2 8 8 C 1.34552 * 107.26965 * 359.97438 * 7 6 5 9 9 C 1.47872 * 126.04716 * 179.97438 * 8 7 6 10 10 O 1.21553 * 119.99675 * 180.02562 * 9 8 7 11 11 N 1.34776 * 119.99836 * 0.02562 * 9 8 7 12 12 C 1.46508 * 119.99573 * 174.90435 * 11 9 8 13 13 C 1.52998 * 110.01736 * 65.17568 * 12 11 9 14 14 N 1.46499 * 109.47142 * 55.16650 * 13 12 11 15 15 C 1.36936 * 120.00259 * 174.90319 * 14 13 12 16 16 H 1.07998 * 120.00036 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00464 * 180.02562 * 15 14 13 18 18 N 1.31624 * 119.99713 * 359.72430 * 17 15 14 19 19 Si 1.86796 * 120.00586 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47109 * 59.99737 * 19 17 15 21 21 H 1.48492 * 109.47357 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46772 * 300.00271 * 19 17 15 23 23 C 1.54260 * 110.07059 * 186.59087 * 12 11 9 24 24 C 1.54894 * 104.19267 * 95.69800 * 23 12 11 25 25 C 1.54888 * 102.75119 * 37.94199 * 24 23 12 26 26 C 1.53874 * 110.03210 * 303.78295 * 12 11 9 27 27 N 1.28853 * 125.74832 * 255.30750 * 5 2 1 28 28 H 1.09004 * 109.46965 * 300.00257 * 1 2 3 29 29 H 1.09005 * 109.47257 * 59.99675 * 1 2 3 30 30 H 1.08993 * 109.47411 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46916 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.46980 * 299.99781 * 3 2 1 33 33 H 1.08996 * 109.47048 * 60.00562 * 3 2 1 34 34 H 1.09001 * 109.46867 * 300.00620 * 4 2 1 35 35 H 1.09006 * 109.47153 * 59.99990 * 4 2 1 36 36 H 1.08998 * 109.47433 * 180.02562 * 4 2 1 37 37 H 1.08000 * 126.18901 * 0.02562 * 6 5 2 38 38 H 0.96993 * 120.00337 * 354.90972 * 11 9 8 39 39 H 1.09002 * 109.47135 * 295.17411 * 13 12 11 40 40 H 1.08997 * 109.47285 * 175.17138 * 13 12 11 41 41 H 0.96998 * 120.00145 * 354.91308 * 14 13 12 42 42 H 0.97000 * 120.00071 * 180.02562 * 18 17 15 43 43 H 1.08996 * 110.48620 * 214.37091 * 23 12 11 44 44 H 1.08997 * 110.48801 * 337.02131 * 23 12 11 45 45 H 1.08999 * 110.75950 * 279.62334 * 24 23 12 46 46 H 1.09004 * 110.75460 * 156.25838 * 24 23 12 47 47 H 1.08998 * 110.48761 * 203.37808 * 25 24 23 48 48 H 1.09002 * 110.48754 * 80.72967 * 25 24 23 49 49 H 1.09000 * 110.03407 * 359.95562 * 26 12 11 50 50 H 1.09005 * 110.02989 * 121.38262 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0138 -2.0221 1.3923 7 7 2.5281 -2.2504 2.5738 8 6 2.8506 -1.0576 3.1063 9 6 3.4617 -0.8340 4.4342 10 8 3.7078 0.2963 4.8073 11 7 3.7457 -1.8836 5.2305 12 6 4.4520 -1.6723 6.4966 13 6 3.5833 -0.8491 7.4498 14 7 2.2855 -1.5072 7.6193 15 6 1.3758 -1.0074 8.5125 16 1 1.6149 -0.1278 9.0918 17 6 0.1463 -1.6312 8.6735 18 7 -0.1474 -2.7000 7.9636 19 14 -1.0950 -0.9490 9.8914 20 1 -1.4460 0.4434 9.5130 21 1 -2.3185 -1.7903 9.8750 22 1 -0.5068 -0.9580 11.2550 23 6 4.8024 -3.0298 7.1402 24 6 6.2583 -3.3008 6.6861 25 6 6.9007 -1.8924 6.7393 26 6 5.7860 -0.9492 6.2417 27 7 2.5192 -0.1253 2.2401 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1393 36 1 3.1300 -0.7217 -1.2490 37 1 1.6519 -2.7675 0.6995 38 1 3.4826 -2.7787 4.9655 39 1 3.4337 0.1480 7.0356 40 1 4.0797 -0.7700 8.4170 41 1 2.0705 -2.2970 7.0989 42 1 -1.0067 -3.1357 8.0758 43 1 4.7481 -2.9622 8.2267 44 1 4.1364 -3.8100 6.7717 45 1 6.2790 -3.6967 5.6708 46 1 6.7583 -3.9797 7.3769 47 1 7.7659 -1.8426 6.0782 48 1 7.1851 -1.6411 7.7611 49 1 5.9084 -0.7561 5.1759 50 1 5.8146 -0.0117 6.7971 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698632987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:18 Heat of formation + Delta-G solvation = 36.176774 kcal Electronic energy + Delta-G solvation = -30260.070621 eV Core-core repulsion = 26323.311475 eV Total energy + Delta-G solvation = -3936.759146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.51216 -41.35738 -38.89488 -38.14495 -36.17619 -34.70008 -33.57253 -32.99583 -31.95914 -29.84337 -29.56655 -28.47229 -28.41346 -26.49838 -25.51189 -24.01213 -23.98019 -22.03763 -21.52629 -21.09789 -20.28965 -19.14374 -18.86885 -17.59515 -17.49311 -17.37983 -16.59183 -16.19942 -16.15796 -15.66704 -15.44738 -15.25401 -15.03330 -15.01813 -14.88447 -14.53498 -14.07707 -13.79681 -13.58270 -13.32367 -13.24846 -13.21373 -13.02126 -12.80045 -12.79119 -12.71143 -12.39261 -12.29896 -12.22435 -12.01341 -11.99079 -11.90804 -11.79986 -11.73541 -11.45383 -11.40947 -11.38946 -11.23202 -10.85831 -10.55178 -9.99468 -8.96862 -7.94973 -5.22481 0.36669 1.13522 1.20636 1.42227 1.46388 1.52237 2.06662 2.35282 2.54354 3.11786 3.27544 3.37525 3.51787 3.64808 3.70716 3.75625 3.79383 3.87275 3.95239 4.17797 4.39249 4.50690 4.53546 4.55537 4.57004 4.60722 4.66814 4.68387 4.76745 4.78904 4.80577 4.85778 4.92645 4.93453 5.08062 5.08779 5.10075 5.16042 5.19896 5.20581 5.26014 5.34341 5.39484 5.45355 5.50834 5.64613 5.72038 6.26375 6.45308 7.00260 7.20333 7.33286 8.08132 8.36172 9.27945 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008903 B = 0.003964 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.381939 B = 7062.748403 C = 9237.309523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.155 3.845 3 C -0.148 4.148 4 C -0.152 4.152 5 N -0.288 5.288 6 C 0.198 3.802 7 N -0.504 5.504 8 C 0.114 3.886 9 C 0.612 3.388 10 O -0.554 6.554 11 N -0.681 5.681 12 C 0.171 3.829 13 C 0.147 3.853 14 N -0.731 5.731 15 C -0.248 4.248 16 H 0.066 0.934 17 C -0.071 4.071 18 N -0.964 5.964 19 Si 0.972 3.028 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.274 1.274 23 C -0.114 4.114 24 C -0.112 4.112 25 C -0.115 4.115 26 C -0.113 4.113 27 N -0.274 5.274 28 H 0.038 0.962 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.113 0.887 33 H 0.044 0.956 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.060 0.940 37 H 0.272 0.728 38 H 0.410 0.590 39 H 0.006 0.994 40 H 0.033 0.967 41 H 0.376 0.624 42 H 0.251 0.749 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.077 0.923 49 H 0.056 0.944 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.911 -1.126 -22.431 24.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.075 3.925 3 C -0.205 4.205 4 C -0.210 4.210 5 N -0.085 5.085 6 C -0.097 4.097 7 N -0.230 5.230 8 C -0.165 4.165 9 C 0.395 3.605 10 O -0.430 6.430 11 N -0.332 5.332 12 C 0.086 3.914 13 C 0.019 3.981 14 N -0.374 5.374 15 C -0.380 4.380 16 H 0.084 0.916 17 C -0.263 4.263 18 N -0.615 5.615 19 Si 0.800 3.200 20 H -0.213 1.213 21 H -0.215 1.215 22 H -0.200 1.200 23 C -0.152 4.152 24 C -0.150 4.150 25 C -0.152 4.152 26 C -0.152 4.152 27 N -0.115 5.115 28 H 0.057 0.943 29 H 0.136 0.864 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.131 0.869 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.134 0.866 36 H 0.079 0.921 37 H 0.287 0.713 38 H 0.247 0.753 39 H 0.024 0.976 40 H 0.051 0.949 41 H 0.208 0.792 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.108 0.892 47 H 0.102 0.898 48 H 0.095 0.905 49 H 0.075 0.925 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.204 0.180 -21.740 23.609 hybrid contribution -1.511 -0.055 0.493 1.591 sum 7.693 0.125 -21.247 22.597 Atomic orbital electron populations 1.22310 0.90648 1.04512 1.04152 1.21688 0.96181 0.94200 0.80403 1.22008 1.01600 0.93022 1.03894 1.22286 1.02057 1.02229 0.94430 1.48208 1.40464 1.06745 1.13071 1.27207 0.99830 0.87031 0.95628 1.71206 1.17648 1.25550 1.08579 1.23624 1.07931 0.86837 0.98127 1.16533 0.77417 0.84845 0.81661 1.90742 1.54325 1.23760 1.74180 1.45700 1.57984 1.09643 1.19882 1.21348 0.91181 0.97058 0.81847 1.21216 0.86350 0.94713 0.95783 1.42294 1.13692 1.33265 1.48127 1.19559 0.95841 1.08249 1.14369 0.91596 1.25491 0.99656 0.98696 1.02463 1.69810 1.23360 1.23010 1.45293 0.85244 0.78451 0.77075 0.79184 1.21303 1.21547 1.19994 1.22542 0.98232 0.93617 1.00786 1.22501 0.93223 0.97161 1.02075 1.22371 0.96824 0.93996 1.02021 1.22362 0.92886 0.98923 1.01038 1.74193 1.14310 1.26292 0.96665 0.94324 0.86411 0.90116 0.92682 0.86897 0.93666 0.89164 0.86555 0.92080 0.71267 0.75335 0.97572 0.94945 0.79185 0.94017 0.90555 0.91330 0.90785 0.89172 0.89838 0.90470 0.92538 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 8.72 71.98 0.63 -1.29 16 2 C 0.16 2.28 1.23 3.60 0.00 2.28 16 3 C -0.15 -2.42 8.05 71.98 0.58 -1.84 16 4 C -0.15 -0.95 8.28 71.98 0.60 -0.36 16 5 N -0.29 -7.08 3.16 -311.58 -0.99 -8.07 16 6 C 0.20 4.48 11.71 180.30 2.11 6.59 16 7 N -0.50 -16.42 11.10 -193.03 -2.14 -18.56 16 8 C 0.11 4.44 7.96 137.13 1.09 5.53 16 9 C 0.61 26.64 6.87 86.79 0.60 27.24 16 10 O -0.55 -27.44 14.35 -3.88 -0.06 -27.49 16 11 N -0.68 -26.48 4.50 -422.45 -1.90 -28.37 16 12 C 0.17 6.40 0.57 4.32 0.00 6.40 16 13 C 0.15 6.98 4.64 86.38 0.40 7.39 16 14 N -0.73 -40.80 5.27 -343.46 -1.81 -42.61 16 15 C -0.25 -15.15 9.99 84.03 0.84 -14.31 16 16 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 17 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 18 N -0.96 -61.35 13.06 21.65 0.28 -61.06 16 19 Si 0.97 48.98 29.55 68.60 2.03 51.01 16 20 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 21 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 22 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 23 C -0.11 -3.60 5.74 31.67 0.18 -3.42 16 24 C -0.11 -2.59 6.91 31.89 0.22 -2.37 16 25 C -0.11 -2.71 6.83 31.67 0.22 -2.49 16 26 C -0.11 -3.67 5.22 31.32 0.16 -3.51 16 27 N -0.27 -9.82 11.09 -52.44 -0.58 -10.40 16 28 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.04 1.03 8.02 -2.39 -0.02 1.01 16 34 H 0.09 0.24 7.34 -2.39 -0.02 0.23 16 35 H 0.12 0.12 8.14 -2.38 -0.02 0.10 16 36 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.27 2.69 7.53 -2.91 -0.02 2.67 16 38 H 0.41 14.99 7.95 -92.71 -0.74 14.25 16 39 H 0.01 0.34 6.55 -2.39 -0.02 0.33 16 40 H 0.03 1.50 8.04 -2.39 -0.02 1.48 16 41 H 0.38 21.71 7.19 -92.71 -0.67 21.04 16 42 H 0.25 15.43 8.31 -92.71 -0.77 14.65 16 43 H 0.08 2.58 7.78 -2.39 -0.02 2.56 16 44 H 0.07 2.23 7.70 -2.39 -0.02 2.21 16 45 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 47 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.06 1.95 6.99 -2.39 -0.02 1.93 16 50 H 0.06 2.12 7.67 -2.38 -0.02 2.10 16 Total: -1.00 -86.06 400.10 2.48 -83.58 By element: Atomic # 1 Polarization: 40.43 SS G_CDS: -0.46 Total: 39.98 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: 8.10 Total: 22.01 kcal Atomic # 7 Polarization: -161.94 SS G_CDS: -7.14 Total: -169.08 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.06 Total: -27.49 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 2.03 Total: 51.01 kcal Total: -86.06 2.48 -83.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698632987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.756 kcal (2) G-P(sol) polarization free energy of solvation -86.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds