Wall clock time and date at job start Tue Mar 31 2020 18:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99791 * 2 1 4 4 C 1.53003 * 109.46929 * 269.99549 * 3 2 1 5 5 C 1.52999 * 109.47103 * 300.00458 * 4 3 2 6 6 C 1.53002 * 109.47116 * 60.00273 * 4 3 2 7 7 C 1.52996 * 109.47181 * 180.02562 * 4 3 2 8 8 N 1.46493 * 109.47484 * 180.02562 * 7 4 3 9 9 C 1.36935 * 120.00241 * 179.97438 * 8 7 4 10 10 H 1.08000 * 120.00034 * 0.02562 * 9 8 7 11 11 C 1.38815 * 119.99774 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99598 * 180.02562 * 11 9 8 13 13 Si 1.86792 * 120.00275 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47152 * 90.00213 * 13 11 9 15 15 H 1.48500 * 109.47183 * 209.99909 * 13 11 9 16 16 H 1.48501 * 109.47490 * 329.99935 * 13 11 9 17 17 C 1.34780 * 120.00223 * 179.97438 * 2 1 3 18 18 O 1.21271 * 120.00170 * 180.02562 * 17 2 1 19 19 C 1.50698 * 119.99607 * 0.02562 * 17 2 1 20 20 N 1.46496 * 109.47075 * 180.02562 * 19 17 2 21 21 C 1.35319 * 125.87322 * 124.99617 * 20 19 17 22 22 C 1.35350 * 106.18009 * 180.02562 * 21 20 19 23 23 C 1.50690 * 126.75204 * 180.02562 * 22 21 20 24 24 C 1.53000 * 117.50063 * 85.00262 * 23 22 21 25 25 C 1.53002 * 60.02940 * 252.49714 * 24 23 22 26 26 N 1.33773 * 106.49307 * 0.26101 * 22 21 20 27 27 N 1.28632 * 108.88612 * 359.56734 * 26 22 21 28 28 H 1.09001 * 109.47496 * 270.00149 * 1 2 3 29 29 H 1.08999 * 109.47309 * 30.00277 * 1 2 3 30 30 H 1.09002 * 109.46768 * 149.99986 * 1 2 3 31 31 H 1.08991 * 109.47258 * 29.99562 * 3 2 1 32 32 H 1.08999 * 109.46725 * 149.99983 * 3 2 1 33 33 H 1.08997 * 109.47626 * 59.99868 * 5 4 3 34 34 H 1.09003 * 109.46686 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.46986 * 299.99322 * 5 4 3 36 36 H 1.09004 * 109.47223 * 59.99535 * 6 4 3 37 37 H 1.08995 * 109.47291 * 180.02562 * 6 4 3 38 38 H 1.09004 * 109.46897 * 300.00114 * 6 4 3 39 39 H 1.09003 * 109.47035 * 300.00779 * 7 4 3 40 40 H 1.09008 * 109.47042 * 59.99837 * 7 4 3 41 41 H 0.97008 * 119.99844 * 0.02562 * 8 7 4 42 42 H 0.97006 * 120.00306 * 179.97438 * 12 11 9 43 43 H 1.09001 * 109.47593 * 60.00088 * 19 17 2 44 44 H 1.09007 * 109.47485 * 299.99792 * 19 17 2 45 45 H 1.08004 * 126.90510 * 359.97438 * 21 20 19 46 46 H 1.09008 * 115.56062 * 230.68892 * 23 22 21 47 47 H 1.09002 * 117.49833 * 359.97438 * 24 23 22 48 48 H 1.09002 * 117.49953 * 144.99860 * 24 23 22 49 49 H 1.09000 * 117.49996 * 107.50493 * 25 24 23 50 50 H 1.08999 * 117.49664 * 252.51862 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2794 0.6440 -2.1637 6 6 1.1156 1.8933 -2.1639 7 6 3.2180 3.0351 -1.4426 8 7 3.4617 3.4582 -2.8237 9 6 4.1347 4.6242 -3.0740 10 1 4.4863 5.2317 -2.2531 11 6 4.3661 5.0249 -4.3828 12 7 5.0134 6.1454 -4.6233 13 14 3.7587 3.9739 -5.8025 14 1 2.3855 4.3958 -6.1787 15 1 4.6649 4.1432 -6.9668 16 1 3.7429 2.5471 -5.3910 17 6 2.1389 -1.1672 0.0005 18 8 3.3516 -1.1672 0.0010 19 6 1.3854 -2.4723 0.0005 20 7 2.3373 -3.5858 0.0018 21 6 2.3739 -4.5967 0.9005 22 6 3.4015 -5.3952 0.5283 23 6 3.8537 -6.6600 1.2114 24 6 3.1396 -7.9599 0.8358 25 6 2.8855 -7.3149 2.1997 26 7 3.9399 -4.8379 -0.5621 27 7 3.2832 -3.7704 -0.8515 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0284 0.5137 32 1 3.1498 1.1384 0.5138 33 1 2.7344 -0.2999 -2.1637 34 1 3.4614 0.9589 -3.1913 35 1 4.2318 0.5138 -1.6499 36 1 0.5265 2.6529 -1.6500 37 1 1.2973 2.2074 -3.1916 38 1 0.5706 0.9493 -2.1638 39 1 2.6293 3.7949 -0.9286 40 1 4.1705 2.9043 -0.9288 41 1 3.1456 2.9128 -3.5611 42 1 5.1755 6.4252 -5.5378 43 1 0.7591 -2.5303 -0.8897 44 1 0.7584 -2.5299 0.8903 45 1 1.7160 -4.7376 1.7454 46 1 4.9186 -6.7178 1.4369 47 1 2.3423 -7.9002 0.0948 48 1 3.7347 -8.8729 0.8138 49 1 1.9214 -6.8310 2.3559 50 1 3.3138 -7.8034 3.0750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700442462.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:43 Heat of formation + Delta-G solvation = 118.798305 kcal Electronic energy + Delta-G solvation = -29431.899685 eV Core-core repulsion = 25498.723278 eV Total energy + Delta-G solvation = -3933.176407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.51507 -40.50698 -37.82281 -37.49630 -35.42911 -34.71516 -33.15292 -30.96741 -30.76862 -29.35901 -28.10868 -26.82657 -26.11157 -25.39879 -24.39414 -23.11597 -22.42852 -21.78887 -20.90631 -19.70021 -18.70767 -17.95034 -17.70099 -17.61266 -16.53870 -16.14266 -15.93437 -15.74604 -14.97748 -14.81261 -14.60087 -14.32715 -14.08289 -13.96206 -13.50963 -13.37064 -13.14730 -12.98265 -12.79953 -12.61723 -12.32077 -12.27521 -11.97964 -11.79004 -11.45722 -11.42646 -11.36524 -11.30051 -11.12904 -10.87429 -10.83505 -10.71668 -10.54354 -10.40424 -10.36449 -10.04585 -9.83108 -9.54704 -9.27324 -8.86150 -8.84098 -7.17755 -5.73352 -3.07755 1.30105 1.84532 2.19503 2.30812 2.70657 3.38560 3.39122 3.42841 3.47556 3.75394 3.95231 4.10519 4.32243 4.42030 4.45855 4.53514 4.62317 4.66024 4.85619 4.86913 4.96240 5.00376 5.09001 5.19818 5.20110 5.26432 5.41605 5.45517 5.49292 5.59280 5.66355 5.66942 5.76005 5.76927 5.81301 5.88363 5.93429 6.04312 6.19110 6.23411 6.32053 6.43145 6.56376 6.65235 6.74654 6.82936 6.99786 7.79704 8.03469 8.35665 8.46013 9.25451 9.98005 10.18328 11.45262 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019878 B = 0.002352 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.268823 B =11900.962692 C =12611.966959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.605 5.605 3 C 0.130 3.870 4 C -0.091 4.091 5 C -0.125 4.125 6 C -0.138 4.138 7 C 0.170 3.830 8 N -0.751 5.751 9 C -0.240 4.240 10 H 0.090 0.910 11 C 0.003 3.997 12 N -0.935 5.935 13 Si 0.881 3.119 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.277 1.277 17 C 0.499 3.501 18 O -0.496 6.496 19 C 0.097 3.903 20 N -0.282 5.282 21 C -0.051 4.051 22 C 0.010 3.990 23 C -0.071 4.071 24 C -0.165 4.165 25 C -0.171 4.171 26 N -0.263 5.263 27 N -0.046 5.046 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.040 0.960 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.026 0.974 40 H 0.028 0.972 41 H 0.361 0.639 42 H 0.259 0.741 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.188 0.812 46 H 0.122 0.878 47 H 0.094 0.906 48 H 0.101 0.899 49 H 0.095 0.905 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.892 -25.806 17.024 34.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.339 5.339 3 C 0.008 3.992 4 C -0.092 4.092 5 C -0.182 4.182 6 C -0.195 4.195 7 C 0.042 3.958 8 N -0.398 5.398 9 C -0.370 4.370 10 H 0.107 0.893 11 C -0.192 4.192 12 N -0.583 5.583 13 Si 0.712 3.288 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.203 1.203 17 C 0.283 3.717 18 O -0.368 6.368 19 C -0.028 4.028 20 N -0.075 5.075 21 C -0.201 4.201 22 C -0.127 4.127 23 C -0.091 4.091 24 C -0.203 4.203 25 C -0.208 4.208 26 N -0.130 5.130 27 N -0.025 5.025 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.046 0.954 41 H 0.195 0.805 42 H 0.069 0.931 43 H 0.145 0.855 44 H 0.150 0.850 45 H 0.205 0.795 46 H 0.140 0.860 47 H 0.113 0.887 48 H 0.119 0.881 49 H 0.113 0.887 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.416 -24.999 15.794 32.898 hybrid contribution -1.188 -0.768 -0.211 1.430 sum -15.604 -25.768 15.583 33.916 Atomic orbital electron populations 1.22074 0.79458 1.04164 1.02118 1.47704 1.06910 1.05887 1.73412 1.21598 0.97599 0.82940 0.97101 1.21186 0.96404 0.97211 0.94427 1.21739 0.99718 0.96261 1.00488 1.21914 0.96022 1.00170 1.01409 1.20548 0.96274 0.91045 0.87887 1.42721 1.69498 1.26099 1.01457 1.19062 1.27650 0.96797 0.93523 0.89252 1.24652 1.00549 0.97181 0.96834 1.69700 1.46188 1.23035 1.19389 0.86595 0.78425 0.80420 0.83404 1.21143 1.21681 1.20309 1.20076 0.88464 0.84811 0.78359 1.90876 1.12879 1.86270 1.46799 1.21952 0.90049 0.83554 1.07292 1.46769 1.23233 1.18068 1.19472 1.23195 1.05101 0.91907 0.99899 1.20983 0.96243 0.98906 0.96594 1.20007 0.98594 0.88457 1.02014 1.23001 1.03119 0.95855 0.98291 1.23025 1.00390 1.03594 0.93804 1.75122 1.21622 1.02718 1.13563 1.78528 0.97470 1.12473 1.14031 0.92121 0.89407 0.91364 0.89977 0.89446 0.94107 0.92767 0.92068 0.92654 0.92166 0.93381 0.95572 0.95434 0.80454 0.93120 0.85476 0.84964 0.79511 0.85977 0.88703 0.88061 0.88664 0.87940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.31 9.15 59.85 0.55 0.86 16 2 N -0.60 -5.56 2.40 -181.57 -0.44 -6.00 16 3 C 0.13 1.54 4.60 -4.04 -0.02 1.52 16 4 C -0.09 -1.37 0.60 -154.51 -0.09 -1.47 16 5 C -0.12 -2.17 6.97 37.16 0.26 -1.91 16 6 C -0.14 -1.87 7.05 37.16 0.26 -1.61 16 7 C 0.17 3.30 5.15 -4.05 -0.02 3.28 16 8 N -0.75 -18.13 4.81 -59.91 -0.29 -18.42 16 9 C -0.24 -6.94 10.47 -15.06 -0.16 -7.10 16 10 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 11 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 12 N -0.93 -29.94 13.97 55.49 0.78 -29.16 16 13 Si 0.88 22.74 27.73 -169.99 -4.71 18.02 16 14 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.29 -7.61 7.11 56.52 0.40 -7.20 16 16 H -0.28 -6.83 6.52 56.52 0.37 -6.46 16 17 C 0.50 5.49 6.09 -10.98 -0.07 5.42 16 18 O -0.50 -8.04 13.45 5.56 0.07 -7.96 16 19 C 0.10 0.68 5.49 -5.20 -0.03 0.65 16 20 N -0.28 -3.04 3.20 -62.44 -0.20 -3.24 16 21 C -0.05 -0.45 10.89 -17.04 -0.19 -0.64 16 22 C 0.01 0.11 6.88 -82.78 -0.57 -0.46 16 23 C -0.07 -0.57 6.33 -91.74 -0.58 -1.15 16 24 C -0.17 -1.03 10.23 -26.73 -0.27 -1.30 16 25 C -0.17 -0.86 10.03 -26.69 -0.27 -1.13 16 26 N -0.26 -4.01 12.41 33.28 0.41 -3.59 16 27 N -0.05 -0.70 12.13 60.35 0.73 0.04 16 28 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.09 0.46 6.05 -51.93 -0.31 0.15 16 30 H 0.07 0.18 6.44 -51.93 -0.33 -0.16 16 31 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.09 1.20 7.42 -51.93 -0.39 0.81 16 33 H 0.04 0.66 6.15 -51.93 -0.32 0.34 16 34 H 0.05 1.05 6.86 -51.93 -0.36 0.70 16 35 H 0.06 1.18 7.73 -51.93 -0.40 0.78 16 36 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 37 H 0.06 0.98 6.86 -51.93 -0.36 0.62 16 38 H 0.05 0.52 5.99 -51.93 -0.31 0.21 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.36 8.60 3.22 -40.82 -0.13 8.47 16 42 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 43 H 0.13 0.61 7.40 -51.93 -0.38 0.23 16 44 H 0.13 0.32 8.03 -51.92 -0.42 -0.10 16 45 H 0.19 0.79 7.46 -52.48 -0.39 0.40 16 46 H 0.12 0.97 8.14 -51.92 -0.42 0.55 16 47 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.09 0.37 7.24 -51.93 -0.38 -0.01 16 50 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 392.63 15.07 5.92 5.92 Total: -1.00 -39.24 392.63 -6.88 -46.12 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -7.87 Total: 3.31 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -1.29 Total: -5.03 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: 1.00 Total: -60.39 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.07 Total: -7.96 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.71 Total: 18.02 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -39.24 -6.88 -46.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700442462.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.921 kcal (2) G-P(sol) polarization free energy of solvation -39.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds