Wall clock time and date at job start Tue Mar 31 2020 18:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99791 * 2 1 4 4 C 1.53003 * 109.46929 * 269.99549 * 3 2 1 5 5 C 1.52999 * 109.47103 * 300.00458 * 4 3 2 6 6 C 1.53002 * 109.47116 * 60.00273 * 4 3 2 7 7 C 1.52996 * 109.47181 * 180.02562 * 4 3 2 8 8 N 1.46493 * 109.47484 * 180.02562 * 7 4 3 9 9 C 1.36935 * 120.00241 * 179.97438 * 8 7 4 10 10 H 1.08000 * 120.00034 * 0.02562 * 9 8 7 11 11 C 1.38815 * 119.99774 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99598 * 180.02562 * 11 9 8 13 13 Si 1.86792 * 120.00275 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47152 * 90.00213 * 13 11 9 15 15 H 1.48500 * 109.47183 * 209.99909 * 13 11 9 16 16 H 1.48501 * 109.47490 * 329.99935 * 13 11 9 17 17 C 1.34780 * 120.00223 * 179.97438 * 2 1 3 18 18 O 1.21271 * 120.00170 * 180.02562 * 17 2 1 19 19 C 1.50698 * 119.99607 * 0.02562 * 17 2 1 20 20 N 1.46496 * 109.47075 * 180.02562 * 19 17 2 21 21 C 1.35319 * 125.87322 * 124.99617 * 20 19 17 22 22 C 1.35350 * 106.18009 * 180.02562 * 21 20 19 23 23 C 1.50690 * 126.75204 * 180.02562 * 22 21 20 24 24 C 1.53000 * 117.50063 * 85.00262 * 23 22 21 25 25 C 1.53002 * 60.02940 * 252.49714 * 24 23 22 26 26 N 1.33773 * 106.49307 * 0.26101 * 22 21 20 27 27 N 1.28632 * 108.88612 * 359.56734 * 26 22 21 28 28 H 1.09001 * 109.47496 * 270.00149 * 1 2 3 29 29 H 1.08999 * 109.47309 * 30.00277 * 1 2 3 30 30 H 1.09002 * 109.46768 * 149.99986 * 1 2 3 31 31 H 1.08991 * 109.47258 * 29.99562 * 3 2 1 32 32 H 1.08999 * 109.46725 * 149.99983 * 3 2 1 33 33 H 1.08997 * 109.47626 * 59.99868 * 5 4 3 34 34 H 1.09003 * 109.46686 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.46986 * 299.99322 * 5 4 3 36 36 H 1.09004 * 109.47223 * 59.99535 * 6 4 3 37 37 H 1.08995 * 109.47291 * 180.02562 * 6 4 3 38 38 H 1.09004 * 109.46897 * 300.00114 * 6 4 3 39 39 H 1.09003 * 109.47035 * 300.00779 * 7 4 3 40 40 H 1.09008 * 109.47042 * 59.99837 * 7 4 3 41 41 H 0.97008 * 119.99844 * 0.02562 * 8 7 4 42 42 H 0.97006 * 120.00306 * 179.97438 * 12 11 9 43 43 H 1.09001 * 109.47593 * 60.00088 * 19 17 2 44 44 H 1.09007 * 109.47485 * 299.99792 * 19 17 2 45 45 H 1.08004 * 126.90510 * 359.97438 * 21 20 19 46 46 H 1.09008 * 115.56062 * 230.68892 * 23 22 21 47 47 H 1.09002 * 117.49833 * 359.97438 * 24 23 22 48 48 H 1.09002 * 117.49953 * 144.99860 * 24 23 22 49 49 H 1.09000 * 117.49996 * 107.50493 * 25 24 23 50 50 H 1.08999 * 117.49664 * 252.51862 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2794 0.6440 -2.1637 6 6 1.1156 1.8933 -2.1639 7 6 3.2180 3.0351 -1.4426 8 7 3.4617 3.4582 -2.8237 9 6 4.1347 4.6242 -3.0740 10 1 4.4863 5.2317 -2.2531 11 6 4.3661 5.0249 -4.3828 12 7 5.0134 6.1454 -4.6233 13 14 3.7587 3.9739 -5.8025 14 1 2.3855 4.3958 -6.1787 15 1 4.6649 4.1432 -6.9668 16 1 3.7429 2.5471 -5.3910 17 6 2.1389 -1.1672 0.0005 18 8 3.3516 -1.1672 0.0010 19 6 1.3854 -2.4723 0.0005 20 7 2.3373 -3.5858 0.0018 21 6 2.3739 -4.5967 0.9005 22 6 3.4015 -5.3952 0.5283 23 6 3.8537 -6.6600 1.2114 24 6 3.1396 -7.9599 0.8358 25 6 2.8855 -7.3149 2.1997 26 7 3.9399 -4.8379 -0.5621 27 7 3.2832 -3.7704 -0.8515 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0284 0.5137 32 1 3.1498 1.1384 0.5138 33 1 2.7344 -0.2999 -2.1637 34 1 3.4614 0.9589 -3.1913 35 1 4.2318 0.5138 -1.6499 36 1 0.5265 2.6529 -1.6500 37 1 1.2973 2.2074 -3.1916 38 1 0.5706 0.9493 -2.1638 39 1 2.6293 3.7949 -0.9286 40 1 4.1705 2.9043 -0.9288 41 1 3.1456 2.9128 -3.5611 42 1 5.1755 6.4252 -5.5378 43 1 0.7591 -2.5303 -0.8897 44 1 0.7584 -2.5299 0.8903 45 1 1.7160 -4.7376 1.7454 46 1 4.9186 -6.7178 1.4369 47 1 2.3423 -7.9002 0.0948 48 1 3.7347 -8.8729 0.8138 49 1 1.9214 -6.8310 2.3559 50 1 3.3138 -7.8034 3.0750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700442462.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:42 Heat of formation + Delta-G solvation = 90.234742 kcal Electronic energy + Delta-G solvation = -29433.138294 eV Core-core repulsion = 25498.723278 eV Total energy + Delta-G solvation = -3934.415016 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.28431 -41.37144 -38.94201 -38.13389 -36.58367 -35.53739 -34.86528 -32.79343 -31.69118 -30.16512 -28.84784 -28.12238 -27.51946 -26.47523 -25.03558 -24.25825 -23.51585 -22.69604 -21.60601 -20.63768 -20.17965 -19.36596 -18.59795 -18.38448 -17.38305 -16.96935 -16.83561 -16.47273 -16.37633 -15.84730 -15.60842 -15.44373 -15.33480 -15.22238 -14.62843 -14.45400 -14.20669 -14.00978 -13.85193 -13.72086 -13.35796 -13.18979 -13.16393 -12.86664 -12.60477 -12.56454 -12.49965 -12.30038 -12.28740 -12.13458 -12.09289 -11.83201 -11.75698 -11.70583 -11.55911 -11.32450 -11.15140 -11.01773 -10.71536 -9.97309 -9.64971 -9.31232 -8.06417 -5.38374 0.58198 1.26311 1.30859 1.34959 1.41544 1.45789 1.50237 2.00762 2.43287 2.89406 3.17233 3.24549 3.39231 3.60978 3.71834 3.84376 3.87223 3.90336 3.94796 3.99252 4.01747 4.07252 4.30479 4.35601 4.40543 4.41850 4.50300 4.66106 4.74598 4.78646 4.82154 4.85820 4.86426 4.89710 4.98791 4.99704 5.09032 5.11073 5.13333 5.20612 5.22952 5.31364 5.34790 5.44624 5.48602 5.58704 5.72273 6.18160 6.30401 7.04367 7.06444 7.53544 7.81720 8.00509 9.15325 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019878 B = 0.002352 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.268823 B =11900.962692 C =12611.966959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.598 5.598 3 C 0.138 3.862 4 C -0.080 4.080 5 C -0.111 4.111 6 C -0.133 4.133 7 C 0.165 3.835 8 N -0.753 5.753 9 C -0.231 4.231 10 H 0.057 0.943 11 C -0.063 4.063 12 N -0.982 5.982 13 Si 0.950 3.050 14 H -0.269 1.269 15 H -0.295 1.295 16 H -0.263 1.263 17 C 0.490 3.510 18 O -0.561 6.561 19 C 0.095 3.905 20 N -0.279 5.279 21 C -0.030 4.030 22 C -0.010 4.010 23 C -0.100 4.100 24 C -0.168 4.168 25 C -0.141 4.141 26 N -0.316 5.316 27 N -0.104 5.104 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.027 0.973 35 H 0.029 0.971 36 H 0.074 0.926 37 H 0.031 0.969 38 H 0.081 0.919 39 H 0.039 0.961 40 H 0.008 0.992 41 H 0.365 0.635 42 H 0.258 0.742 43 H 0.155 0.845 44 H 0.191 0.809 45 H 0.240 0.760 46 H 0.110 0.890 47 H 0.089 0.911 48 H 0.108 0.892 49 H 0.116 0.884 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.718 -28.261 18.948 39.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.331 5.331 3 C 0.014 3.986 4 C -0.082 4.082 5 C -0.169 4.169 6 C -0.190 4.190 7 C 0.038 3.962 8 N -0.399 5.399 9 C -0.363 4.363 10 H 0.075 0.925 11 C -0.255 4.255 12 N -0.633 5.633 13 Si 0.777 3.223 14 H -0.194 1.194 15 H -0.222 1.222 16 H -0.188 1.188 17 C 0.277 3.723 18 O -0.438 6.438 19 C -0.029 4.029 20 N -0.073 5.073 21 C -0.180 4.180 22 C -0.148 4.148 23 C -0.120 4.120 24 C -0.205 4.205 25 C -0.178 4.178 26 N -0.181 5.181 27 N -0.082 5.082 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.129 0.871 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.051 0.949 38 H 0.100 0.900 39 H 0.057 0.943 40 H 0.026 0.974 41 H 0.200 0.800 42 H 0.067 0.933 43 H 0.173 0.827 44 H 0.208 0.792 45 H 0.256 0.744 46 H 0.128 0.872 47 H 0.108 0.892 48 H 0.127 0.873 49 H 0.134 0.866 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.313 -27.469 17.733 37.973 hybrid contribution 0.321 0.009 -0.647 0.722 sum -18.992 -27.460 17.086 37.506 Atomic orbital electron populations 1.22477 0.75986 1.05729 1.04637 1.47758 1.08797 1.04269 1.72256 1.21324 0.97745 0.85236 0.94281 1.21078 0.96387 0.93718 0.96976 1.21596 0.98997 0.97685 0.98627 1.21901 0.95101 1.02562 0.99466 1.20740 0.96296 0.93902 0.85251 1.42732 1.68878 1.24673 1.03652 1.19061 1.26848 0.97647 0.92700 0.92471 1.25457 1.01508 0.98740 0.99788 1.69876 1.48283 1.25232 1.19905 0.85489 0.78253 0.79211 0.79316 1.19445 1.22192 1.18832 1.20852 0.88003 0.86456 0.77022 1.90872 1.15904 1.87282 1.49751 1.22437 0.89048 0.79987 1.11394 1.47086 1.22514 1.18891 1.18771 1.23956 1.04312 0.90034 0.99745 1.21588 0.97017 1.00190 0.96023 1.20070 0.98880 0.88403 1.04622 1.23052 1.02768 0.95215 0.99492 1.23183 1.00045 1.01360 0.93229 1.75027 1.23368 1.03747 1.16006 1.78432 0.99803 1.13433 1.16571 0.89167 0.89407 0.88296 0.87054 0.92148 0.92795 0.95353 0.95154 0.90750 0.94946 0.90031 0.94300 0.97375 0.80048 0.93326 0.82718 0.79225 0.74362 0.87156 0.89246 0.87337 0.86621 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.19 9.15 127.77 1.17 1.36 16 2 N -0.60 -8.89 2.40 -846.77 -2.03 -10.92 16 3 C 0.14 3.02 4.60 86.38 0.40 3.41 16 4 C -0.08 -2.35 0.60 -52.18 -0.03 -2.38 16 5 C -0.11 -3.95 6.97 71.98 0.50 -3.45 16 6 C -0.13 -3.22 7.05 71.98 0.51 -2.71 16 7 C 0.16 6.47 5.15 86.38 0.44 6.91 16 8 N -0.75 -36.83 4.81 -343.46 -1.65 -38.48 16 9 C -0.23 -13.77 10.47 84.03 0.88 -12.89 16 10 H 0.06 3.70 8.06 -2.91 -0.02 3.67 16 11 C -0.06 -3.89 5.50 84.86 0.47 -3.42 16 12 N -0.98 -64.83 13.97 21.65 0.30 -64.53 16 13 Si 0.95 47.67 27.73 68.60 1.90 49.57 16 14 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 15 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 16 H -0.26 -12.44 6.52 99.48 0.65 -11.79 16 17 C 0.49 9.63 6.09 87.66 0.53 10.16 16 18 O -0.56 -18.46 13.45 -3.00 -0.04 -18.50 16 19 C 0.09 0.90 5.49 85.63 0.47 1.37 16 20 N -0.28 -5.41 3.20 -351.46 -1.12 -6.53 16 21 C -0.03 -0.44 10.89 83.49 0.91 0.47 16 22 C -0.01 -0.21 6.88 41.59 0.29 0.07 16 23 C -0.10 -1.54 6.33 -11.52 -0.07 -1.61 16 24 C -0.17 -1.85 10.23 30.60 0.31 -1.54 16 25 C -0.14 -0.96 10.03 30.62 0.31 -0.66 16 26 N -0.32 -10.03 12.41 -48.61 -0.60 -10.64 16 27 N -0.10 -3.23 12.13 37.02 0.45 -2.78 16 28 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.09 0.40 6.05 -2.39 -0.01 0.38 16 30 H 0.10 -0.20 6.44 -2.39 -0.02 -0.21 16 31 H 0.11 1.80 8.07 -2.39 -0.02 1.78 16 32 H 0.06 1.68 7.42 -2.39 -0.02 1.66 16 33 H 0.05 1.74 6.15 -2.39 -0.01 1.72 16 34 H 0.03 1.11 6.86 -2.39 -0.02 1.09 16 35 H 0.03 1.23 7.73 -2.39 -0.02 1.21 16 36 H 0.07 1.53 8.08 -2.38 -0.02 1.51 16 37 H 0.03 0.97 6.86 -2.39 -0.02 0.95 16 38 H 0.08 1.42 5.99 -2.39 -0.01 1.40 16 39 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 41 H 0.37 17.33 3.22 -92.70 -0.30 17.03 16 42 H 0.26 16.19 8.31 -92.70 -0.77 15.42 16 43 H 0.16 0.65 7.40 -2.39 -0.02 0.64 16 44 H 0.19 -0.46 8.03 -2.38 -0.02 -0.48 16 45 H 0.24 0.58 7.46 -2.91 -0.02 0.56 16 46 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 47 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.12 0.32 7.24 -2.39 -0.02 0.30 16 50 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -96.10 392.63 4.88 -91.22 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.59 Total: 16.48 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 7.08 Total: -4.90 kcal Atomic # 7 Polarization: -129.22 SS G_CDS: -4.66 Total: -133.88 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.04 Total: -18.50 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 1.90 Total: 49.57 kcal Total: -96.10 4.88 -91.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700442462.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.457 kcal (2) G-P(sol) polarization free energy of solvation -96.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds