Wall clock time and date at job start Tue Mar 31 2020 18:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99884 * 2 1 4 4 C 1.52998 * 109.47058 * 125.00214 * 3 2 1 5 5 N 1.46496 * 109.46811 * 179.97438 * 4 3 2 6 6 C 1.34820 * 126.59648 * 125.27424 * 5 4 3 7 7 C 1.36592 * 106.84198 * 180.14558 * 6 5 4 8 8 C 1.47525 * 125.77089 * 179.89563 * 7 6 5 9 9 O 1.21593 * 119.99810 * 6.23092 * 8 7 6 10 10 N 1.34770 * 119.99842 * 186.23084 * 8 7 6 11 11 C 1.46498 * 120.00277 * 5.24043 * 10 8 7 12 12 C 1.46500 * 119.99709 * 185.23940 * 10 8 7 13 13 C 1.53002 * 109.47118 * 269.99985 * 12 10 8 14 14 C 1.53001 * 109.47256 * 299.99846 * 13 12 10 15 15 C 1.52997 * 109.47324 * 60.00052 * 13 12 10 16 16 C 1.53004 * 109.46926 * 180.02562 * 13 12 10 17 17 N 1.46507 * 109.46756 * 179.97438 * 16 13 12 18 18 C 1.36940 * 119.99460 * 180.02562 * 17 16 13 19 19 H 1.07994 * 120.00298 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99749 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99635 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99933 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47263 * 59.99782 * 22 20 18 24 24 H 1.48502 * 109.46964 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46894 * 299.99339 * 22 20 18 26 26 N 1.34403 * 108.45704 * 359.63381 * 7 6 5 27 27 N 1.28756 * 109.52567 * 0.22567 * 26 7 6 28 28 H 1.07996 * 120.00193 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.00101 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99784 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.46829 * 4.99832 * 3 2 1 32 32 H 1.09003 * 109.46799 * 245.00210 * 3 2 1 33 33 H 1.08997 * 109.46944 * 60.00033 * 4 3 2 34 34 H 1.08999 * 109.46967 * 300.00018 * 4 3 2 35 35 H 1.08000 * 126.57590 * 0.02562 * 6 5 4 36 36 H 1.08998 * 109.47234 * 275.35309 * 11 10 8 37 37 H 1.08999 * 109.46907 * 35.35730 * 11 10 8 38 38 H 1.09002 * 109.47214 * 155.35441 * 11 10 8 39 39 H 1.08998 * 109.47715 * 30.00241 * 12 10 8 40 40 H 1.08997 * 109.47374 * 150.00423 * 12 10 8 41 41 H 1.08999 * 109.46942 * 60.00306 * 14 13 12 42 42 H 1.08996 * 109.47014 * 179.97438 * 14 13 12 43 43 H 1.08999 * 109.47407 * 300.00453 * 14 13 12 44 44 H 1.09009 * 109.46696 * 59.99893 * 15 13 12 45 45 H 1.08998 * 109.47575 * 179.97438 * 15 13 12 46 46 H 1.09000 * 109.46997 * 300.00402 * 15 13 12 47 47 H 1.08998 * 109.47079 * 299.99851 * 16 13 12 48 48 H 1.08996 * 109.47011 * 60.00582 * 16 13 12 49 49 H 0.96995 * 120.00070 * 0.02562 * 17 16 13 50 50 H 0.96998 * 119.99583 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 7 3.7679 2.6016 1.1812 6 6 3.8537 3.4806 2.1998 7 6 4.6290 4.5172 1.7638 8 6 4.9906 5.7130 2.5483 9 8 4.6855 5.7845 3.7232 10 7 5.6591 6.7262 1.9628 11 6 5.9261 6.6923 0.5228 12 6 6.1189 7.8616 2.7665 13 6 5.0312 8.9372 2.7989 14 6 4.7365 9.4077 1.3731 15 6 3.7580 8.3566 3.4177 16 6 5.5116 10.1231 3.6377 17 7 4.4703 11.1533 3.6682 18 6 4.6769 12.3152 4.3629 19 1 5.6071 12.4719 4.8886 20 6 3.6901 13.2911 4.3923 21 7 2.5561 13.0997 3.7519 22 14 3.9721 14.8763 5.3393 23 1 5.1563 15.5801 4.7850 24 1 2.7757 15.7472 5.2141 25 1 4.2084 14.5619 6.7713 26 7 5.0114 4.2607 0.5011 27 7 4.5191 3.1326 0.1230 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6212 1.4026 -0.9314 33 1 3.7399 0.5066 1.0919 34 1 2.4773 1.2355 2.1129 35 1 3.3955 3.3845 3.1731 36 1 6.8325 6.1168 0.3347 37 1 5.0861 6.2256 0.0084 38 1 6.0584 7.7094 0.1537 39 1 6.3288 7.5265 3.7822 40 1 7.0258 8.2753 2.3256 41 1 4.3945 8.5630 0.7752 42 1 3.9614 10.1736 1.3962 43 1 5.6435 9.8213 0.9322 44 1 3.9680 8.0214 4.4335 45 1 2.9833 9.1229 3.4412 46 1 3.4160 7.5118 2.8197 47 1 5.7218 9.7883 4.6534 48 1 6.4183 10.5367 3.1964 49 1 3.6347 11.0123 3.1963 50 1 1.8667 13.7818 3.7721 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700445516.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:23 Heat of formation + Delta-G solvation = 101.475561 kcal Electronic energy + Delta-G solvation = -29034.108925 eV Core-core repulsion = 25100.181348 eV Total energy + Delta-G solvation = -3933.927578 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.47493 -39.87518 -37.21509 -36.85607 -35.07269 -34.12352 -32.98219 -31.26473 -30.23091 -29.67986 -27.71580 -26.69822 -25.82866 -25.39429 -24.99145 -23.27247 -22.13007 -22.10025 -20.47950 -19.78063 -18.28288 -17.68875 -17.15520 -16.54609 -16.48314 -16.18910 -15.78482 -15.47036 -14.90852 -14.58994 -14.52187 -14.11596 -13.71296 -13.63233 -13.48339 -13.26415 -13.04365 -12.94532 -12.74678 -12.52174 -12.39264 -12.18497 -12.09154 -11.87761 -11.74458 -11.24123 -11.10393 -11.02126 -10.89535 -10.73759 -10.70849 -10.53505 -10.22317 -10.16971 -9.99937 -9.98246 -9.70116 -9.58622 -9.47802 -8.77388 -8.41563 -6.80032 -5.67549 -2.94587 0.87677 1.53058 1.58326 1.80573 3.03009 3.27884 3.50018 3.53898 3.55182 3.86649 3.99194 4.12042 4.33059 4.46020 4.58184 4.63647 4.67703 4.71724 4.91652 5.12386 5.21576 5.27586 5.32238 5.34440 5.35237 5.47827 5.53357 5.65467 5.70084 5.84388 5.98205 6.00614 6.02807 6.05340 6.07809 6.11311 6.23553 6.29218 6.41816 6.56013 6.66223 6.73775 6.84794 6.89296 7.05656 7.10118 7.41906 7.70705 7.78181 8.21441 8.52234 9.63029 10.23334 10.58182 11.55626 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020313 B = 0.002078 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.071030 B =13473.078717 C =14139.410465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C -0.107 4.107 4 C 0.126 3.874 5 N -0.362 5.362 6 C 0.092 3.908 7 C -0.095 4.095 8 C 0.598 3.402 9 O -0.529 6.529 10 N -0.593 5.593 11 C 0.080 3.920 12 C 0.129 3.871 13 C -0.086 4.086 14 C -0.136 4.136 15 C -0.121 4.121 16 C 0.165 3.835 17 N -0.727 5.727 18 C -0.235 4.235 19 H 0.069 0.931 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.907 3.093 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.287 1.287 26 N -0.201 5.201 27 N -0.070 5.070 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.204 0.796 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.049 0.951 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.038 0.962 47 H 0.019 0.981 48 H 0.017 0.983 49 H 0.385 0.615 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.923 -29.395 -8.934 30.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.179 4.179 3 C -0.144 4.144 4 C 0.006 3.994 5 N -0.147 5.147 6 C -0.064 4.064 7 C -0.234 4.234 8 C 0.384 3.616 9 O -0.405 6.405 10 N -0.324 5.324 11 C -0.063 4.063 12 C 0.006 3.994 13 C -0.087 4.087 14 C -0.194 4.194 15 C -0.179 4.179 16 C 0.037 3.963 17 N -0.373 5.373 18 C -0.366 4.366 19 H 0.087 0.913 20 C -0.212 4.212 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.214 1.214 26 N -0.075 5.075 27 N -0.051 5.051 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.133 0.867 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.221 0.779 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.057 0.943 47 H 0.037 0.963 48 H 0.035 0.965 49 H 0.220 0.780 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.303 -29.467 -9.649 31.033 hybrid contribution -0.615 0.848 1.253 1.633 sum 0.689 -28.618 -8.396 29.832 Atomic orbital electron populations 1.23987 0.95904 1.02401 0.99222 1.22724 0.96016 0.97586 1.01595 1.21025 0.98020 0.96855 0.98540 1.22027 0.94443 0.81356 1.01621 1.50525 1.35854 1.17536 1.10826 1.23401 0.98385 0.89292 0.95340 1.21546 1.08330 1.00144 0.93382 1.16747 0.78186 0.80934 0.85774 1.90838 1.54046 1.80181 1.15465 1.47542 1.55370 1.19938 1.09545 1.22086 1.02215 1.02421 0.79550 1.21622 0.96382 0.85158 0.96229 1.21114 0.96002 0.95023 0.96567 1.21885 1.01867 1.00546 0.95072 1.21717 0.96631 0.99237 1.00279 1.20589 0.92132 0.87850 0.95727 1.42385 1.16785 1.16199 1.61886 1.19208 1.00129 0.93661 1.23616 0.91326 1.24718 0.96473 0.98784 1.01224 1.69654 1.06529 1.35004 1.47256 0.86268 0.76682 0.83552 0.79697 1.21389 1.21807 1.21371 1.74827 1.15467 1.06984 1.10231 1.81963 1.09136 1.05205 1.08751 0.88301 0.87977 0.86732 0.90471 0.89041 0.88207 0.87533 0.77926 0.92512 0.90111 0.90721 0.89777 0.90344 0.93551 0.91545 0.93218 0.92446 0.92374 0.94337 0.96271 0.96484 0.77999 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.69 14.32 29.01 0.42 -0.27 16 2 C -0.16 -0.58 9.52 -36.03 -0.34 -0.92 16 3 C -0.11 -0.48 5.86 -27.88 -0.16 -0.65 16 4 C 0.13 0.52 6.52 -4.04 -0.03 0.49 16 5 N -0.36 -2.94 3.69 -61.07 -0.23 -3.16 16 6 C 0.09 0.85 11.28 -16.83 -0.19 0.66 16 7 C -0.09 -1.16 6.62 -83.55 -0.55 -1.71 16 8 C 0.60 8.61 6.24 -12.48 -0.08 8.53 16 9 O -0.53 -8.86 14.25 5.28 0.08 -8.79 16 10 N -0.59 -8.04 2.40 -182.82 -0.44 -8.48 16 11 C 0.08 0.92 8.00 59.85 0.48 1.40 16 12 C 0.13 1.87 4.57 -4.04 -0.02 1.85 16 13 C -0.09 -1.49 0.60 -154.51 -0.09 -1.58 16 14 C -0.14 -2.28 7.06 37.16 0.26 -2.02 16 15 C -0.12 -2.28 6.89 37.16 0.26 -2.02 16 16 C 0.17 3.47 5.15 -4.04 -0.02 3.44 16 17 N -0.73 -18.90 5.01 -59.90 -0.30 -19.20 16 18 C -0.23 -6.75 9.99 -15.06 -0.15 -6.90 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 21 N -0.94 -28.91 13.06 55.49 0.72 -28.18 16 22 Si 0.91 22.97 29.55 -169.99 -5.02 17.95 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 26 N -0.20 -2.46 9.06 32.85 0.30 -2.16 16 27 N -0.07 -0.78 13.65 60.35 0.82 0.05 16 28 H 0.10 0.40 7.84 -52.49 -0.41 -0.01 16 29 H 0.10 0.30 8.06 -52.49 -0.42 -0.12 16 30 H 0.11 0.28 8.06 -52.49 -0.42 -0.14 16 31 H 0.08 0.42 7.79 -51.93 -0.40 0.01 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.11 0.21 8.08 -51.93 -0.42 -0.21 16 35 H 0.20 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 37 H 0.08 0.96 5.91 -51.93 -0.31 0.65 16 38 H 0.07 0.80 6.29 -51.93 -0.33 0.47 16 39 H 0.08 1.29 7.50 -51.93 -0.39 0.91 16 40 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 41 H 0.05 0.69 6.07 -51.93 -0.32 0.38 16 42 H 0.07 1.30 6.86 -51.93 -0.36 0.95 16 43 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16 44 H 0.06 1.13 7.63 -51.92 -0.40 0.74 16 45 H 0.06 1.23 6.86 -51.93 -0.36 0.87 16 46 H 0.04 0.68 6.06 -51.93 -0.31 0.37 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.38 10.49 5.36 -40.82 -0.22 10.27 16 50 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 399.52 15.07 6.02 6.02 Total: -1.00 -34.63 399.52 -6.35 -40.98 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.98 Total: 5.25 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -0.32 Total: -0.27 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: 0.88 Total: -61.14 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.08 Total: -8.79 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.63 -6.35 -40.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700445516.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.452 kcal (2) G-P(sol) polarization free energy of solvation -34.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds