Wall clock time and date at job start Tue Mar 31 2020 18:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99884 * 2 1 4 4 C 1.52998 * 109.47058 * 125.00214 * 3 2 1 5 5 N 1.46496 * 109.46811 * 179.97438 * 4 3 2 6 6 C 1.34820 * 126.59648 * 125.27424 * 5 4 3 7 7 C 1.36592 * 106.84198 * 180.14558 * 6 5 4 8 8 C 1.47525 * 125.77089 * 179.89563 * 7 6 5 9 9 O 1.21593 * 119.99810 * 6.23092 * 8 7 6 10 10 N 1.34770 * 119.99842 * 186.23084 * 8 7 6 11 11 C 1.46498 * 120.00277 * 5.24043 * 10 8 7 12 12 C 1.46500 * 119.99709 * 185.23940 * 10 8 7 13 13 C 1.53002 * 109.47118 * 269.99985 * 12 10 8 14 14 C 1.53001 * 109.47256 * 299.99846 * 13 12 10 15 15 C 1.52997 * 109.47324 * 60.00052 * 13 12 10 16 16 C 1.53004 * 109.46926 * 180.02562 * 13 12 10 17 17 N 1.46507 * 109.46756 * 179.97438 * 16 13 12 18 18 C 1.36940 * 119.99460 * 180.02562 * 17 16 13 19 19 H 1.07994 * 120.00298 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99749 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99635 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99933 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47263 * 59.99782 * 22 20 18 24 24 H 1.48502 * 109.46964 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46894 * 299.99339 * 22 20 18 26 26 N 1.34403 * 108.45704 * 359.63381 * 7 6 5 27 27 N 1.28756 * 109.52567 * 0.22567 * 26 7 6 28 28 H 1.07996 * 120.00193 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.00101 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99784 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.46829 * 4.99832 * 3 2 1 32 32 H 1.09003 * 109.46799 * 245.00210 * 3 2 1 33 33 H 1.08997 * 109.46944 * 60.00033 * 4 3 2 34 34 H 1.08999 * 109.46967 * 300.00018 * 4 3 2 35 35 H 1.08000 * 126.57590 * 0.02562 * 6 5 4 36 36 H 1.08998 * 109.47234 * 275.35309 * 11 10 8 37 37 H 1.08999 * 109.46907 * 35.35730 * 11 10 8 38 38 H 1.09002 * 109.47214 * 155.35441 * 11 10 8 39 39 H 1.08998 * 109.47715 * 30.00241 * 12 10 8 40 40 H 1.08997 * 109.47374 * 150.00423 * 12 10 8 41 41 H 1.08999 * 109.46942 * 60.00306 * 14 13 12 42 42 H 1.08996 * 109.47014 * 179.97438 * 14 13 12 43 43 H 1.08999 * 109.47407 * 300.00453 * 14 13 12 44 44 H 1.09009 * 109.46696 * 59.99893 * 15 13 12 45 45 H 1.08998 * 109.47575 * 179.97438 * 15 13 12 46 46 H 1.09000 * 109.46997 * 300.00402 * 15 13 12 47 47 H 1.08998 * 109.47079 * 299.99851 * 16 13 12 48 48 H 1.08996 * 109.47011 * 60.00582 * 16 13 12 49 49 H 0.96995 * 120.00070 * 0.02562 * 17 16 13 50 50 H 0.96998 * 119.99583 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 7 3.7679 2.6016 1.1812 6 6 3.8537 3.4806 2.1998 7 6 4.6290 4.5172 1.7638 8 6 4.9906 5.7130 2.5483 9 8 4.6855 5.7845 3.7232 10 7 5.6591 6.7262 1.9628 11 6 5.9261 6.6923 0.5228 12 6 6.1189 7.8616 2.7665 13 6 5.0312 8.9372 2.7989 14 6 4.7365 9.4077 1.3731 15 6 3.7580 8.3566 3.4177 16 6 5.5116 10.1231 3.6377 17 7 4.4703 11.1533 3.6682 18 6 4.6769 12.3152 4.3629 19 1 5.6071 12.4719 4.8886 20 6 3.6901 13.2911 4.3923 21 7 2.5561 13.0997 3.7519 22 14 3.9721 14.8763 5.3393 23 1 5.1563 15.5801 4.7850 24 1 2.7757 15.7472 5.2141 25 1 4.2084 14.5619 6.7713 26 7 5.0114 4.2607 0.5011 27 7 4.5191 3.1326 0.1230 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6212 1.4026 -0.9314 33 1 3.7399 0.5066 1.0919 34 1 2.4773 1.2355 2.1129 35 1 3.3955 3.3845 3.1731 36 1 6.8325 6.1168 0.3347 37 1 5.0861 6.2256 0.0084 38 1 6.0584 7.7094 0.1537 39 1 6.3288 7.5265 3.7822 40 1 7.0258 8.2753 2.3256 41 1 4.3945 8.5630 0.7752 42 1 3.9614 10.1736 1.3962 43 1 5.6435 9.8213 0.9322 44 1 3.9680 8.0214 4.4335 45 1 2.9833 9.1229 3.4412 46 1 3.4160 7.5118 2.8197 47 1 5.7218 9.7883 4.6534 48 1 6.4183 10.5367 3.1964 49 1 3.6347 11.0123 3.1963 50 1 1.8667 13.7818 3.7721 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700445516.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:22 Heat of formation + Delta-G solvation = 79.554304 kcal Electronic energy + Delta-G solvation = -29035.059503 eV Core-core repulsion = 25100.181348 eV Total energy + Delta-G solvation = -3934.878155 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.25466 -41.02413 -38.61575 -37.32555 -36.42086 -35.00234 -34.51518 -32.34802 -31.85683 -30.33709 -28.84949 -28.11296 -27.28327 -26.88359 -25.56764 -24.77561 -23.49555 -22.75635 -20.83288 -20.72407 -19.81880 -19.10770 -18.50833 -17.38343 -17.35828 -17.11560 -16.62782 -16.49724 -16.21372 -15.69346 -15.58189 -15.39326 -15.16305 -14.95491 -14.49552 -14.29238 -14.08369 -13.97541 -13.78621 -13.74424 -13.63266 -13.38417 -13.03303 -12.91803 -12.76050 -12.56816 -12.44944 -12.43668 -12.22873 -12.15775 -12.03351 -11.95394 -11.63427 -11.60108 -11.47541 -11.27240 -10.98695 -10.89260 -10.36528 -10.25321 -9.54930 -8.93772 -7.91384 -5.18939 0.15353 0.66165 1.04714 1.41082 1.47704 1.51433 1.57263 2.00245 2.26400 2.59078 3.17375 3.35405 3.41574 3.73681 3.79235 3.87135 3.93479 3.98208 4.01756 4.04440 4.23312 4.30720 4.36727 4.39339 4.43657 4.48228 4.54776 4.63944 4.71711 4.81295 4.87053 4.88446 4.95731 4.97136 4.99279 5.06280 5.12315 5.20111 5.21871 5.23589 5.44704 5.49116 5.51948 5.56282 5.59967 5.72102 5.82674 6.30873 6.36400 6.87504 7.16021 7.37243 8.15283 8.38951 9.32333 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020313 B = 0.002078 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.071030 B =13473.078717 C =14139.410465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.157 4.157 3 C -0.102 4.102 4 C 0.119 3.881 5 N -0.349 5.349 6 C 0.106 3.894 7 C -0.122 4.122 8 C 0.595 3.405 9 O -0.561 6.561 10 N -0.593 5.593 11 C 0.083 3.917 12 C 0.136 3.864 13 C -0.077 4.077 14 C -0.127 4.127 15 C -0.106 4.106 16 C 0.164 3.836 17 N -0.739 5.739 18 C -0.243 4.243 19 H 0.075 0.925 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.975 3.025 23 H -0.276 1.276 24 H -0.296 1.296 25 H -0.280 1.280 26 N -0.214 5.214 27 N -0.088 5.088 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.131 0.869 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.135 0.865 35 H 0.230 0.770 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.064 0.936 42 H 0.032 0.968 43 H 0.064 0.936 44 H 0.043 0.957 45 H 0.026 0.974 46 H 0.046 0.954 47 H 0.014 0.986 48 H 0.029 0.971 49 H 0.375 0.625 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.932 -31.033 -9.099 32.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.176 4.176 3 C -0.140 4.140 4 C 0.000 4.000 5 N -0.133 5.133 6 C -0.052 4.052 7 C -0.261 4.261 8 C 0.382 3.618 9 O -0.439 6.439 10 N -0.324 5.324 11 C -0.059 4.059 12 C 0.013 3.987 13 C -0.078 4.078 14 C -0.185 4.185 15 C -0.164 4.164 16 C 0.036 3.964 17 N -0.383 5.383 18 C -0.375 4.375 19 H 0.093 0.907 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.804 3.196 23 H -0.203 1.203 24 H -0.223 1.223 25 H -0.206 1.206 26 N -0.087 5.087 27 N -0.068 5.068 28 H 0.111 0.889 29 H 0.130 0.870 30 H 0.148 0.852 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.137 0.863 34 H 0.153 0.847 35 H 0.247 0.753 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.122 0.878 41 H 0.083 0.917 42 H 0.051 0.949 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.045 0.955 46 H 0.065 0.935 47 H 0.032 0.968 48 H 0.047 0.953 49 H 0.209 0.791 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.351 -31.152 -9.846 32.755 hybrid contribution -0.953 1.211 1.284 2.006 sum 1.398 -29.941 -8.562 31.173 Atomic orbital electron populations 1.24102 0.96201 1.02657 0.99433 1.22770 0.95892 0.97601 1.01320 1.20950 0.97765 0.97097 0.98209 1.22458 0.94747 0.80048 1.02757 1.50773 1.34759 1.18094 1.09706 1.23788 0.96945 0.88274 0.96177 1.21415 1.10393 1.00497 0.93810 1.17061 0.77617 0.81542 0.85595 1.90816 1.55372 1.80944 1.16762 1.47597 1.55111 1.19343 1.10321 1.22154 1.02573 1.03139 0.78064 1.21463 0.95979 0.84630 0.96585 1.21015 0.96153 0.94545 0.96093 1.21792 1.01490 1.00243 0.94926 1.21550 0.96577 0.98393 0.99843 1.20738 0.91333 0.88044 0.96239 1.42579 1.17534 1.16689 1.61452 1.19639 1.00192 0.94492 1.23132 0.90666 1.25569 0.96418 1.02290 1.02789 1.69826 1.07413 1.35930 1.49068 0.85188 0.76521 0.79413 0.78499 1.20255 1.22252 1.20591 1.74791 1.16050 1.07602 1.10303 1.81889 1.09907 1.05149 1.09853 0.88919 0.87017 0.85168 0.91638 0.90279 0.86275 0.84742 0.75348 0.91403 0.90491 0.89773 0.90607 0.87755 0.91684 0.94932 0.91678 0.93794 0.95467 0.93458 0.96786 0.95295 0.79135 0.94135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.19 14.32 67.78 0.97 -0.22 16 2 C -0.16 -0.84 9.52 25.65 0.24 -0.59 16 3 C -0.10 -0.77 5.86 29.85 0.17 -0.59 16 4 C 0.12 0.67 6.52 86.38 0.56 1.23 16 5 N -0.35 -4.97 3.69 -347.11 -1.28 -6.25 16 6 C 0.11 1.76 11.28 83.85 0.95 2.70 16 7 C -0.12 -2.84 6.62 40.82 0.27 -2.57 16 8 C 0.59 16.67 6.24 86.69 0.54 17.21 16 9 O -0.56 -18.60 14.25 -4.01 -0.06 -18.66 16 10 N -0.59 -15.32 2.40 -850.58 -2.04 -17.36 16 11 C 0.08 1.74 8.00 127.77 1.02 2.77 16 12 C 0.14 3.79 4.57 86.38 0.39 4.18 16 13 C -0.08 -2.63 0.60 -52.18 -0.03 -2.66 16 14 C -0.13 -4.17 7.06 71.98 0.51 -3.66 16 15 C -0.11 -4.08 6.89 71.98 0.50 -3.58 16 16 C 0.16 6.83 5.15 86.38 0.44 7.27 16 17 N -0.74 -39.02 5.01 -343.44 -1.72 -40.74 16 18 C -0.24 -14.01 9.99 84.03 0.84 -13.17 16 19 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 20 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 21 N -0.97 -61.28 13.06 21.65 0.28 -61.00 16 22 Si 0.97 47.48 29.55 68.60 2.03 49.51 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 25 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 26 N -0.21 -5.00 9.06 -49.99 -0.45 -5.45 16 27 N -0.09 -1.82 13.65 37.02 0.51 -1.32 16 28 H 0.09 0.68 7.84 -2.91 -0.02 0.66 16 29 H 0.11 0.48 8.06 -2.91 -0.02 0.46 16 30 H 0.13 0.30 8.06 -2.91 -0.02 0.27 16 31 H 0.06 0.65 7.79 -2.39 -0.02 0.63 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.13 0.07 8.08 -2.39 -0.02 0.05 16 35 H 0.23 2.41 8.06 -2.91 -0.02 2.38 16 36 H 0.07 1.29 8.12 -2.39 -0.02 1.28 16 37 H 0.08 1.72 5.91 -2.39 -0.01 1.71 16 38 H 0.08 1.60 6.29 -2.39 -0.02 1.58 16 39 H 0.08 2.27 7.50 -2.39 -0.02 2.25 16 40 H 0.10 2.38 8.07 -2.39 -0.02 2.36 16 41 H 0.06 1.87 6.07 -2.39 -0.01 1.85 16 42 H 0.03 1.28 6.86 -2.39 -0.02 1.27 16 43 H 0.06 1.92 8.07 -2.39 -0.02 1.90 16 44 H 0.04 1.77 7.63 -2.38 -0.02 1.75 16 45 H 0.03 1.18 6.86 -2.39 -0.02 1.16 16 46 H 0.05 1.70 6.06 -2.39 -0.01 1.68 16 47 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.38 21.14 5.36 -92.71 -0.50 20.65 16 50 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -75.79 399.52 5.55 -70.24 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.44 Total: 26.92 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 7.85 Total: 4.11 kcal Atomic # 7 Polarization: -127.41 SS G_CDS: -4.71 Total: -132.12 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.06 Total: -18.66 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -75.79 5.55 -70.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700445516.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.795 kcal (2) G-P(sol) polarization free energy of solvation -75.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds