Wall clock time and date at job start Tue Mar 31 2020 18:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 119.99767 * 2 1 4 4 C 1.52999 * 109.47353 * 269.99898 * 3 2 1 5 5 C 1.53002 * 109.47292 * 300.00433 * 4 3 2 6 6 C 1.53002 * 109.46743 * 60.00043 * 4 3 2 7 7 C 1.52992 * 109.47172 * 179.97438 * 4 3 2 8 8 N 1.46507 * 109.47028 * 180.02562 * 7 4 3 9 9 C 1.36936 * 119.99732 * 180.02562 * 8 7 4 10 10 H 1.07998 * 120.00711 * 0.02562 * 9 8 7 11 11 C 1.38814 * 119.99867 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00366 * 179.97438 * 11 9 8 13 13 Si 1.86806 * 119.99896 * 359.97438 * 11 9 8 14 14 H 1.48488 * 109.47206 * 89.99832 * 13 11 9 15 15 H 1.48503 * 109.46959 * 210.00472 * 13 11 9 16 16 H 1.48505 * 109.47010 * 329.99874 * 13 11 9 17 17 C 1.34772 * 120.00134 * 179.97438 * 2 1 3 18 18 O 1.21289 * 119.99789 * 175.34472 * 17 2 1 19 19 C 1.50699 * 120.00211 * 355.34599 * 17 2 1 20 20 H 1.09003 * 109.68888 * 35.24780 * 19 17 2 21 21 C 1.53428 * 109.69458 * 274.70382 * 19 17 2 22 22 C 1.53111 * 109.55627 * 190.56513 * 21 19 17 23 23 C 1.53418 * 109.58199 * 70.05425 * 22 21 19 24 24 C 1.50602 * 108.33379 * 310.17492 * 23 22 21 25 25 N 1.32905 * 129.16713 * 196.57292 * 24 23 22 26 26 N 1.29011 * 108.63903 * 179.85579 * 25 24 23 27 27 N 1.29105 * 110.26154 * 0.02691 * 26 25 24 28 28 H 0.96996 * 126.01078 * 180.02562 * 27 26 25 29 29 C 1.34399 * 107.98218 * 0.06607 * 27 26 25 30 30 H 1.09005 * 109.47163 * 95.34186 * 1 2 3 31 31 H 1.09004 * 109.46739 * 215.34042 * 1 2 3 32 32 H 1.08996 * 109.47163 * 335.33956 * 1 2 3 33 33 H 1.09005 * 109.47084 * 29.99897 * 3 2 1 34 34 H 1.08997 * 109.47351 * 149.99693 * 3 2 1 35 35 H 1.09001 * 109.47041 * 59.99424 * 5 4 3 36 36 H 1.08994 * 109.47153 * 180.02562 * 5 4 3 37 37 H 1.09000 * 109.46446 * 300.00128 * 5 4 3 38 38 H 1.08995 * 109.47286 * 60.00305 * 6 4 3 39 39 H 1.08998 * 109.47092 * 180.02562 * 6 4 3 40 40 H 1.09009 * 109.47277 * 299.99671 * 6 4 3 41 41 H 1.08995 * 109.47461 * 300.00065 * 7 4 3 42 42 H 1.09002 * 109.47137 * 60.00417 * 7 4 3 43 43 H 0.96998 * 119.99666 * 359.97438 * 8 7 4 44 44 H 0.96993 * 120.00174 * 179.97438 * 12 11 9 45 45 H 1.09006 * 109.45434 * 310.58998 * 21 19 17 46 46 H 1.08998 * 109.46179 * 70.53435 * 21 19 17 47 47 H 1.09000 * 109.44867 * 190.09071 * 22 21 19 48 48 H 1.08994 * 109.44799 * 310.01707 * 22 21 19 49 49 H 1.08995 * 109.69060 * 69.88598 * 23 22 21 50 50 H 1.08992 * 109.69274 * 190.42772 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 3.2794 0.6442 -2.1638 6 6 1.1156 1.8934 -2.1637 7 6 3.2169 3.0358 -1.4424 8 7 3.4605 3.4591 -2.8237 9 6 4.1335 4.6251 -3.0738 10 1 4.4851 5.2325 -2.2530 11 6 4.3640 5.0264 -4.3826 12 7 5.0104 6.1474 -4.6231 13 14 3.7565 3.9754 -5.8025 14 1 2.3829 4.3964 -6.1777 15 1 4.6621 4.1457 -6.9671 16 1 3.7420 2.5485 -5.3913 17 6 2.1389 -1.1671 0.0005 18 8 3.3488 -1.1688 -0.0847 19 6 1.3892 -2.4701 0.1070 20 1 0.4402 -2.3922 -0.4236 21 6 1.1307 -2.7988 1.5832 22 6 0.6100 -4.2334 1.7053 23 6 1.7390 -5.2197 1.3793 24 6 2.3718 -4.8022 0.0780 25 7 3.1624 -5.4984 -0.7324 26 7 3.4752 -4.7567 -1.7405 27 7 2.9229 -3.5951 -1.6295 28 1 3.0054 -2.8618 -2.2591 29 6 2.2141 -3.5801 -0.4876 30 1 -0.3634 -0.0957 -1.0232 31 1 -0.3633 -0.8383 0.5945 32 1 -0.3633 0.9339 0.4288 33 1 1.6083 2.0284 0.5138 34 1 3.1499 1.1385 0.5139 35 1 2.7344 -0.2998 -2.1638 36 1 3.4614 0.9591 -3.1913 37 1 4.2317 0.5139 -1.6499 38 1 0.5265 2.6530 -1.6499 39 1 1.2972 2.2076 -3.1915 40 1 0.5706 0.9493 -2.1638 41 1 2.6274 3.7952 -0.9287 42 1 4.1693 2.9059 -0.9285 43 1 3.1457 2.9129 -3.5609 44 1 5.1717 6.4276 -5.5376 45 1 2.0597 -2.7006 2.1450 46 1 0.3893 -2.1080 1.9846 47 1 0.2589 -4.4067 2.7225 48 1 -0.2139 -4.3810 1.0071 49 1 2.4851 -5.1994 2.1737 50 1 1.3314 -6.2260 1.2839 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700445662.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:35 Heat of formation + Delta-G solvation = 67.252020 kcal Electronic energy + Delta-G solvation = -30613.142469 eV Core-core repulsion = 26677.730847 eV Total energy + Delta-G solvation = -3935.411622 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.71694 -40.68594 -37.99958 -37.00624 -35.43738 -34.06601 -33.21102 -31.11839 -30.61676 -30.42624 -28.13983 -27.11258 -26.31671 -25.89029 -24.55598 -23.35678 -23.01955 -22.11882 -20.24171 -19.78130 -18.75320 -18.21560 -17.74224 -17.64296 -16.38047 -16.21204 -15.89578 -15.26587 -14.80006 -14.59271 -14.40795 -14.36377 -14.08612 -13.97041 -13.56086 -13.44016 -13.39003 -13.02965 -12.82998 -12.70967 -12.40954 -12.34264 -12.01271 -11.74978 -11.73640 -11.51973 -11.50720 -11.43806 -11.35605 -10.97524 -10.92590 -10.88359 -10.59348 -10.52820 -10.46645 -10.12946 -9.92014 -9.60295 -9.17000 -8.92014 -8.84252 -7.23794 -5.78678 -3.13444 1.30724 2.19685 2.26910 2.49782 2.68001 3.33320 3.35143 3.41990 3.77118 4.03554 4.07634 4.29020 4.41077 4.56369 4.59835 4.65269 4.73667 4.84848 4.85303 4.93334 4.98545 5.05746 5.15005 5.21568 5.24380 5.35219 5.38302 5.46113 5.54400 5.55529 5.59688 5.63664 5.68182 5.74248 5.75736 5.86819 5.92187 6.00645 6.11063 6.23205 6.35172 6.47922 6.54960 6.59214 6.65459 6.73984 7.04032 7.82046 7.97983 8.24164 8.40682 9.19781 9.92134 10.12235 11.40013 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018675 B = 0.002952 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.962805 B = 9481.371970 C =10345.303475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.604 5.604 3 C 0.128 3.872 4 C -0.090 4.090 5 C -0.124 4.124 6 C -0.138 4.138 7 C 0.170 3.830 8 N -0.751 5.751 9 C -0.242 4.242 10 H 0.090 0.910 11 C 0.004 3.996 12 N -0.934 5.934 13 Si 0.881 3.119 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.279 1.279 17 C 0.511 3.489 18 O -0.520 6.520 19 C -0.034 4.034 20 H 0.111 0.889 21 C -0.105 4.105 22 C -0.117 4.117 23 C -0.035 4.035 24 C -0.014 4.014 25 N -0.261 5.261 26 N -0.083 5.083 27 N -0.365 5.365 28 H 0.449 0.551 29 C 0.007 3.993 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.033 0.967 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.027 0.973 42 H 0.027 0.973 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.071 0.929 49 H 0.085 0.915 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.369 -20.683 15.164 30.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.337 5.337 3 C 0.005 3.995 4 C -0.091 4.091 5 C -0.181 4.181 6 C -0.195 4.195 7 C 0.042 3.958 8 N -0.398 5.398 9 C -0.371 4.371 10 H 0.108 0.892 11 C -0.191 4.191 12 N -0.583 5.583 13 Si 0.712 3.288 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.205 1.205 17 C 0.297 3.703 18 O -0.396 6.396 19 C -0.058 4.058 20 H 0.129 0.871 21 C -0.143 4.143 22 C -0.155 4.155 23 C -0.074 4.074 24 C -0.154 4.154 25 N -0.127 5.127 26 N -0.062 5.062 27 N -0.083 5.083 28 H 0.295 0.705 29 C -0.130 4.130 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.195 0.805 44 H 0.069 0.931 45 H 0.098 0.902 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.090 0.910 49 H 0.103 0.897 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.658 -21.488 14.342 29.703 hybrid contribution -0.967 0.741 -1.177 1.694 sum -15.625 -20.747 13.165 29.118 Atomic orbital electron populations 1.22056 0.79503 1.03635 1.02205 1.47774 1.06951 1.06068 1.72859 1.21630 0.97607 0.83338 0.96905 1.21171 0.96351 0.97055 0.94571 1.21757 0.99701 0.96057 1.00587 1.21912 0.95965 1.00377 1.01268 1.20549 0.96259 0.91079 0.87864 1.42720 1.69565 1.26072 1.01436 1.19062 1.27712 0.96836 0.93538 0.89224 1.24653 1.00527 0.97143 0.96816 1.69691 1.46159 1.22961 1.19441 0.86598 0.78503 0.80243 0.83459 1.21097 1.21651 1.20497 1.20308 0.88071 0.84833 0.77079 1.90797 1.13677 1.86924 1.48164 1.20018 0.97778 0.88965 0.99044 0.87086 1.21588 1.03094 0.97895 0.91768 1.21642 0.97801 0.93139 1.02892 1.19983 0.96903 0.99758 0.90725 1.21636 1.02351 0.91363 1.00063 1.74818 1.12700 1.25165 1.00006 1.78590 1.18115 0.90041 1.19479 1.44674 1.32127 1.13823 1.17709 0.70508 1.21139 1.02550 0.98514 0.90770 0.91995 0.91164 0.90107 0.90064 0.89583 0.94835 0.92760 0.91891 0.92618 0.92299 0.93378 0.95512 0.95460 0.80517 0.93061 0.90216 0.89747 0.89859 0.91014 0.89691 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 8.69 59.85 0.52 0.87 16 2 N -0.60 -5.23 2.40 -181.56 -0.44 -5.66 16 3 C 0.13 1.42 4.62 -4.04 -0.02 1.40 16 4 C -0.09 -1.28 0.60 -154.51 -0.09 -1.37 16 5 C -0.12 -1.92 6.90 37.16 0.26 -1.67 16 6 C -0.14 -1.79 7.71 37.16 0.29 -1.50 16 7 C 0.17 3.17 5.15 -4.04 -0.02 3.15 16 8 N -0.75 -17.56 4.81 -59.91 -0.29 -17.85 16 9 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16 10 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 11 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 12 N -0.93 -29.50 13.97 55.49 0.78 -28.73 16 13 Si 0.88 22.20 27.74 -169.99 -4.71 17.48 16 14 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 15 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 16 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 17 C 0.51 5.13 5.31 -10.99 -0.06 5.07 16 18 O -0.52 -7.38 13.47 5.55 0.07 -7.30 16 19 C -0.03 -0.25 2.03 -92.78 -0.19 -0.44 16 20 H 0.11 0.55 6.84 -51.93 -0.36 0.19 16 21 C -0.11 -0.55 5.09 -26.45 -0.13 -0.68 16 22 C -0.12 -0.48 5.90 -26.46 -0.16 -0.64 16 23 C -0.03 -0.23 6.30 -27.71 -0.17 -0.41 16 24 C -0.01 -0.15 7.11 -83.12 -0.59 -0.74 16 25 N -0.26 -3.63 12.40 33.16 0.41 -3.22 16 26 N -0.08 -1.17 13.40 60.35 0.81 -0.36 16 27 N -0.37 -4.26 6.64 33.39 0.22 -4.04 16 28 H 0.45 4.59 8.96 -190.08 -1.70 2.89 16 29 C 0.01 0.07 5.94 -82.49 -0.49 -0.42 16 30 H 0.06 0.31 6.52 -51.93 -0.34 -0.03 16 31 H 0.07 0.19 5.51 -51.93 -0.29 -0.10 16 32 H 0.08 0.35 7.83 -51.93 -0.41 -0.06 16 33 H 0.08 0.76 7.86 -51.93 -0.41 0.35 16 34 H 0.09 1.10 7.49 -51.93 -0.39 0.71 16 35 H 0.03 0.45 6.07 -51.93 -0.32 0.13 16 36 H 0.05 0.96 6.86 -51.93 -0.36 0.60 16 37 H 0.06 1.08 7.64 -51.93 -0.40 0.69 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.92 6.86 -51.93 -0.36 0.56 16 40 H 0.05 0.50 5.44 -51.92 -0.28 0.22 16 41 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.36 8.28 3.22 -40.82 -0.13 8.15 16 44 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 45 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 46 H 0.08 0.26 6.99 -51.93 -0.36 -0.10 16 47 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 48 H 0.07 0.26 8.12 -51.93 -0.42 -0.17 16 49 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 378.40 15.07 5.70 5.70 Total: -1.00 -36.31 378.40 -7.62 -43.92 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -9.06 Total: 4.39 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -1.12 Total: -4.33 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: 1.49 Total: -59.86 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.07 Total: -7.30 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.48 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.31 -7.62 -43.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700445662.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.177 kcal (2) G-P(sol) polarization free energy of solvation -36.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds