Wall clock time and date at job start Tue Mar 31 2020 18:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 119.99767 * 2 1 4 4 C 1.52999 * 109.47353 * 269.99898 * 3 2 1 5 5 C 1.53002 * 109.47292 * 300.00433 * 4 3 2 6 6 C 1.53002 * 109.46743 * 60.00043 * 4 3 2 7 7 C 1.52992 * 109.47172 * 179.97438 * 4 3 2 8 8 N 1.46507 * 109.47028 * 180.02562 * 7 4 3 9 9 C 1.36936 * 119.99732 * 180.02562 * 8 7 4 10 10 H 1.07998 * 120.00711 * 0.02562 * 9 8 7 11 11 C 1.38814 * 119.99867 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00366 * 179.97438 * 11 9 8 13 13 Si 1.86806 * 119.99896 * 359.97438 * 11 9 8 14 14 H 1.48488 * 109.47206 * 89.99832 * 13 11 9 15 15 H 1.48503 * 109.46959 * 210.00472 * 13 11 9 16 16 H 1.48505 * 109.47010 * 329.99874 * 13 11 9 17 17 C 1.34772 * 120.00134 * 179.97438 * 2 1 3 18 18 O 1.21289 * 119.99789 * 175.34472 * 17 2 1 19 19 C 1.50699 * 120.00211 * 355.34599 * 17 2 1 20 20 H 1.09003 * 109.68888 * 35.24780 * 19 17 2 21 21 C 1.53428 * 109.69458 * 274.70382 * 19 17 2 22 22 C 1.53111 * 109.55627 * 190.56513 * 21 19 17 23 23 C 1.53418 * 109.58199 * 70.05425 * 22 21 19 24 24 C 1.50602 * 108.33379 * 310.17492 * 23 22 21 25 25 N 1.32905 * 129.16713 * 196.57292 * 24 23 22 26 26 N 1.29011 * 108.63903 * 179.85579 * 25 24 23 27 27 N 1.29105 * 110.26154 * 0.02691 * 26 25 24 28 28 H 0.96996 * 126.01078 * 180.02562 * 27 26 25 29 29 C 1.34399 * 107.98218 * 0.06607 * 27 26 25 30 30 H 1.09005 * 109.47163 * 95.34186 * 1 2 3 31 31 H 1.09004 * 109.46739 * 215.34042 * 1 2 3 32 32 H 1.08996 * 109.47163 * 335.33956 * 1 2 3 33 33 H 1.09005 * 109.47084 * 29.99897 * 3 2 1 34 34 H 1.08997 * 109.47351 * 149.99693 * 3 2 1 35 35 H 1.09001 * 109.47041 * 59.99424 * 5 4 3 36 36 H 1.08994 * 109.47153 * 180.02562 * 5 4 3 37 37 H 1.09000 * 109.46446 * 300.00128 * 5 4 3 38 38 H 1.08995 * 109.47286 * 60.00305 * 6 4 3 39 39 H 1.08998 * 109.47092 * 180.02562 * 6 4 3 40 40 H 1.09009 * 109.47277 * 299.99671 * 6 4 3 41 41 H 1.08995 * 109.47461 * 300.00065 * 7 4 3 42 42 H 1.09002 * 109.47137 * 60.00417 * 7 4 3 43 43 H 0.96998 * 119.99666 * 359.97438 * 8 7 4 44 44 H 0.96993 * 120.00174 * 179.97438 * 12 11 9 45 45 H 1.09006 * 109.45434 * 310.58998 * 21 19 17 46 46 H 1.08998 * 109.46179 * 70.53435 * 21 19 17 47 47 H 1.09000 * 109.44867 * 190.09071 * 22 21 19 48 48 H 1.08994 * 109.44799 * 310.01707 * 22 21 19 49 49 H 1.08995 * 109.69060 * 69.88598 * 23 22 21 50 50 H 1.08992 * 109.69274 * 190.42772 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 3.2794 0.6442 -2.1638 6 6 1.1156 1.8934 -2.1637 7 6 3.2169 3.0358 -1.4424 8 7 3.4605 3.4591 -2.8237 9 6 4.1335 4.6251 -3.0738 10 1 4.4851 5.2325 -2.2530 11 6 4.3640 5.0264 -4.3826 12 7 5.0104 6.1474 -4.6231 13 14 3.7565 3.9754 -5.8025 14 1 2.3829 4.3964 -6.1777 15 1 4.6621 4.1457 -6.9671 16 1 3.7420 2.5485 -5.3913 17 6 2.1389 -1.1671 0.0005 18 8 3.3488 -1.1688 -0.0847 19 6 1.3892 -2.4701 0.1070 20 1 0.4402 -2.3922 -0.4236 21 6 1.1307 -2.7988 1.5832 22 6 0.6100 -4.2334 1.7053 23 6 1.7390 -5.2197 1.3793 24 6 2.3718 -4.8022 0.0780 25 7 3.1624 -5.4984 -0.7324 26 7 3.4752 -4.7567 -1.7405 27 7 2.9229 -3.5951 -1.6295 28 1 3.0054 -2.8618 -2.2591 29 6 2.2141 -3.5801 -0.4876 30 1 -0.3634 -0.0957 -1.0232 31 1 -0.3633 -0.8383 0.5945 32 1 -0.3633 0.9339 0.4288 33 1 1.6083 2.0284 0.5138 34 1 3.1499 1.1385 0.5139 35 1 2.7344 -0.2998 -2.1638 36 1 3.4614 0.9591 -3.1913 37 1 4.2317 0.5139 -1.6499 38 1 0.5265 2.6530 -1.6499 39 1 1.2972 2.2076 -3.1915 40 1 0.5706 0.9493 -2.1638 41 1 2.6274 3.7952 -0.9287 42 1 4.1693 2.9059 -0.9285 43 1 3.1457 2.9129 -3.5609 44 1 5.1717 6.4276 -5.5376 45 1 2.0597 -2.7006 2.1450 46 1 0.3893 -2.1080 1.9846 47 1 0.2589 -4.4067 2.7225 48 1 -0.2139 -4.3810 1.0071 49 1 2.4851 -5.1994 2.1737 50 1 1.3314 -6.2260 1.2839 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700445662.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:34 Heat of formation + Delta-G solvation = 40.785907 kcal Electronic energy + Delta-G solvation = -30614.290126 eV Core-core repulsion = 26677.730847 eV Total energy + Delta-G solvation = -3936.559279 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.55386 -41.48869 -39.06206 -37.70216 -36.55336 -35.05754 -34.74706 -32.82341 -31.48886 -31.17879 -28.85335 -28.26262 -27.56781 -26.96060 -25.35918 -24.36688 -23.76726 -23.62676 -21.04797 -20.50817 -20.21425 -19.35128 -18.97234 -18.38072 -17.25200 -17.10784 -16.87471 -16.37696 -15.99539 -15.78506 -15.53922 -15.27804 -14.90462 -14.86247 -14.64549 -14.52638 -14.21979 -14.18671 -13.91907 -13.81017 -13.31799 -13.22546 -13.11435 -12.88745 -12.72179 -12.59634 -12.47130 -12.40253 -12.30071 -12.24156 -12.14038 -11.94637 -11.77057 -11.69714 -11.57292 -11.52854 -11.35227 -11.01905 -10.75477 -9.95564 -9.61434 -9.31168 -8.06494 -5.38555 0.47795 1.30266 1.34297 1.41212 1.41678 1.46967 1.73034 1.97859 2.43067 3.11420 3.24716 3.44496 3.47876 3.63085 3.76240 3.86222 3.87537 3.94279 4.03008 4.11068 4.27099 4.31777 4.42223 4.44021 4.46897 4.51221 4.64330 4.69393 4.73467 4.80762 4.86615 4.87672 4.93039 4.95408 5.03654 5.08112 5.12144 5.13385 5.18881 5.21450 5.34079 5.35736 5.44481 5.48252 5.54467 5.72626 5.78515 6.18179 6.36916 7.04781 7.10299 7.35674 7.81930 8.00633 9.15460 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018675 B = 0.002952 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.962805 B = 9481.371970 C =10345.303475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.597 5.597 3 C 0.136 3.864 4 C -0.081 4.081 5 C -0.115 4.115 6 C -0.134 4.134 7 C 0.165 3.835 8 N -0.753 5.753 9 C -0.231 4.231 10 H 0.056 0.944 11 C -0.064 4.064 12 N -0.984 5.984 13 Si 0.950 3.050 14 H -0.271 1.271 15 H -0.296 1.296 16 H -0.259 1.259 17 C 0.508 3.492 18 O -0.571 6.571 19 C -0.027 4.027 20 H 0.148 0.852 21 C -0.103 4.103 22 C -0.108 4.108 23 C -0.039 4.039 24 C -0.023 4.023 25 N -0.295 5.295 26 N -0.124 5.124 27 N -0.365 5.365 28 H 0.452 0.548 29 C 0.010 3.990 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.029 0.971 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.031 0.969 40 H 0.080 0.920 41 H 0.036 0.964 42 H 0.010 0.990 43 H 0.365 0.635 44 H 0.258 0.742 45 H 0.059 0.941 46 H 0.118 0.882 47 H 0.110 0.890 48 H 0.086 0.914 49 H 0.084 0.916 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.731 -22.299 16.564 34.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.328 5.328 3 C 0.012 3.988 4 C -0.082 4.082 5 C -0.172 4.172 6 C -0.191 4.191 7 C 0.038 3.962 8 N -0.399 5.399 9 C -0.362 4.362 10 H 0.074 0.926 11 C -0.255 4.255 12 N -0.635 5.635 13 Si 0.778 3.222 14 H -0.197 1.197 15 H -0.223 1.223 16 H -0.184 1.184 17 C 0.296 3.704 18 O -0.450 6.450 19 C -0.050 4.050 20 H 0.165 0.835 21 C -0.141 4.141 22 C -0.145 4.145 23 C -0.078 4.078 24 C -0.164 4.164 25 N -0.159 5.159 26 N -0.103 5.103 27 N -0.084 5.084 28 H 0.298 0.702 29 C -0.128 4.128 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.088 0.912 39 H 0.050 0.950 40 H 0.099 0.901 41 H 0.054 0.946 42 H 0.028 0.972 43 H 0.200 0.800 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.136 0.864 47 H 0.128 0.872 48 H 0.105 0.895 49 H 0.103 0.897 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.075 -23.147 15.771 33.887 hybrid contribution 0.427 1.287 -1.467 1.997 sum -18.648 -21.860 14.305 32.097 Atomic orbital electron populations 1.22437 0.76514 1.06004 1.03611 1.47797 1.08593 1.04548 1.71837 1.21394 0.97817 0.85300 0.94297 1.21077 0.96280 0.93819 0.97043 1.21660 0.99219 0.97601 0.98767 1.21894 0.95228 1.02575 0.99381 1.20736 0.96318 0.93930 0.85168 1.42722 1.68896 1.24594 1.03687 1.19059 1.26805 0.97717 0.92660 0.92550 1.25465 1.01508 0.98708 0.99826 1.69874 1.48395 1.25279 1.19925 0.85486 0.78137 0.79347 0.79270 1.19669 1.22298 1.18445 1.20815 0.87600 0.85962 0.76056 1.90797 1.16070 1.87655 1.50461 1.20239 0.97918 0.86019 1.00872 0.83476 1.21683 1.03249 0.99510 0.89708 1.21658 0.96748 0.91262 1.04867 1.20234 0.97799 1.01224 0.88545 1.22391 1.01619 0.91442 1.00960 1.74759 1.13995 1.26297 1.00868 1.78534 1.19989 0.91190 1.20554 1.44728 1.31975 1.13350 1.18323 0.70204 1.21742 1.01862 0.99327 0.89855 0.91146 0.87962 0.88658 0.87390 0.91828 0.92631 0.95198 0.94422 0.91164 0.94990 0.90129 0.94643 0.97190 0.80018 0.93331 0.92231 0.86357 0.87193 0.89522 0.89749 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.22 8.69 127.77 1.11 1.33 16 2 N -0.60 -8.01 2.40 -846.74 -2.03 -10.05 16 3 C 0.14 2.67 4.62 86.38 0.40 3.07 16 4 C -0.08 -2.16 0.60 -52.18 -0.03 -2.19 16 5 C -0.11 -3.52 6.90 71.98 0.50 -3.03 16 6 C -0.13 -3.01 7.71 71.98 0.55 -2.46 16 7 C 0.17 6.13 5.15 86.38 0.44 6.57 16 8 N -0.75 -35.26 4.81 -343.45 -1.65 -36.91 16 9 C -0.23 -13.40 10.47 84.03 0.88 -12.51 16 10 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 11 C -0.06 -3.82 5.50 84.86 0.47 -3.35 16 12 N -0.98 -63.97 13.97 21.65 0.30 -63.67 16 13 Si 0.95 46.21 27.74 68.60 1.90 48.11 16 14 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 15 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 16 H -0.26 -11.63 6.52 99.48 0.65 -10.98 16 17 C 0.51 8.83 5.31 87.66 0.47 9.30 16 18 O -0.57 -15.90 13.47 -3.06 -0.04 -15.94 16 19 C -0.03 -0.29 2.03 -12.19 -0.02 -0.32 16 20 H 0.15 0.58 6.84 -2.39 -0.02 0.56 16 21 C -0.10 -0.61 5.09 30.78 0.16 -0.45 16 22 C -0.11 -0.39 5.90 30.77 0.18 -0.21 16 23 C -0.04 -0.44 6.30 29.96 0.19 -0.25 16 24 C -0.02 -0.47 7.11 41.75 0.30 -0.17 16 25 N -0.29 -8.33 12.40 -48.99 -0.61 -8.94 16 26 N -0.12 -3.61 13.40 37.02 0.50 -3.12 16 27 N -0.37 -8.48 6.64 -48.27 -0.32 -8.80 16 28 H 0.45 9.25 8.96 -219.69 -1.97 7.28 16 29 C 0.01 0.19 5.94 41.50 0.25 0.43 16 30 H 0.07 0.23 6.52 -2.38 -0.02 0.22 16 31 H 0.10 -0.20 5.51 -2.38 -0.01 -0.21 16 32 H 0.09 0.20 7.83 -2.39 -0.02 0.18 16 33 H 0.11 1.59 7.86 -2.38 -0.02 1.57 16 34 H 0.06 1.58 7.49 -2.39 -0.02 1.56 16 35 H 0.05 1.42 6.07 -2.39 -0.01 1.41 16 36 H 0.03 1.03 6.86 -2.39 -0.02 1.02 16 37 H 0.04 1.32 7.64 -2.39 -0.02 1.31 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.03 0.90 6.86 -2.39 -0.02 0.89 16 40 H 0.08 1.29 5.44 -2.38 -0.01 1.28 16 41 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.37 16.49 3.22 -92.71 -0.30 16.19 16 44 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 45 H 0.06 0.64 8.08 -2.38 -0.02 0.62 16 46 H 0.12 -0.05 6.99 -2.39 -0.02 -0.06 16 47 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 48 H 0.09 0.13 8.12 -2.39 -0.02 0.11 16 49 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -85.47 378.40 2.53 -82.94 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -1.35 Total: 20.60 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 5.83 Total: -4.23 kcal Atomic # 7 Polarization: -127.67 SS G_CDS: -3.81 Total: -131.48 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.04 Total: -15.94 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.90 Total: 48.11 kcal Total: -85.47 2.53 -82.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700445662.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.722 kcal (2) G-P(sol) polarization free energy of solvation -85.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds