Wall clock time and date at job start Tue Mar 31 2020 18:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47396 * 2 1 4 4 N 1.46501 * 109.47113 * 120.00163 * 2 1 3 5 5 N 1.28442 * 125.18945 * 294.93081 * 4 2 1 6 6 C 1.30865 * 110.92893 * 180.27846 * 5 4 2 7 7 C 1.39677 * 107.85911 * 359.71487 * 6 5 4 8 8 C 1.36599 * 125.19198 * 114.71512 * 4 2 1 9 9 C 1.47168 * 126.88412 * 0.02562 * 8 4 2 10 10 O 1.21622 * 119.99619 * 5.00801 * 9 8 4 11 11 N 1.34772 * 119.99800 * 185.01438 * 9 8 4 12 12 C 1.46500 * 119.99664 * 184.89613 * 11 9 8 13 13 C 1.53006 * 109.47016 * 179.97438 * 12 11 9 14 14 N 1.46904 * 109.47061 * 180.02562 * 13 12 11 15 15 C 1.46902 * 110.99962 * 170.00112 * 14 13 12 16 16 C 1.53230 * 109.34021 * 172.74343 * 15 14 13 17 17 N 1.47087 * 108.52305 * 53.82573 * 16 15 14 18 18 C 1.36936 * 120.87785 * 128.79432 * 17 16 15 19 19 H 1.08007 * 119.99596 * 210.64235 * 18 17 16 20 20 C 1.38808 * 120.00518 * 30.64428 * 18 17 16 21 21 N 1.31622 * 119.99536 * 10.03896 * 20 18 17 22 22 Si 1.86801 * 120.00149 * 190.04081 * 20 18 17 23 23 H 1.48501 * 109.46955 * 90.00073 * 22 20 18 24 24 H 1.48500 * 109.47012 * 209.99822 * 22 20 18 25 25 H 1.48493 * 109.47027 * 329.99878 * 22 20 18 26 26 C 1.47075 * 118.23470 * 308.81716 * 17 16 15 27 27 C 1.46895 * 111.00020 * 45.69458 * 14 13 12 28 28 H 1.09005 * 109.47249 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47296 * 300.00044 * 1 2 3 30 30 H 1.09002 * 109.47055 * 59.99980 * 1 2 3 31 31 H 1.09007 * 109.47312 * 239.99863 * 2 1 3 32 32 H 1.09001 * 109.47017 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47035 * 300.00033 * 3 2 1 34 34 H 1.08997 * 109.46934 * 59.99735 * 3 2 1 35 35 H 1.08000 * 126.07259 * 179.67154 * 6 5 4 36 36 H 1.07997 * 127.31816 * 179.97438 * 7 6 5 37 37 H 0.96998 * 120.00549 * 4.89230 * 11 9 8 38 38 H 1.08995 * 109.47238 * 60.00165 * 12 11 9 39 39 H 1.08996 * 109.47624 * 299.99658 * 12 11 9 40 40 H 1.09000 * 109.47385 * 59.99778 * 13 12 11 41 41 H 1.09006 * 109.47182 * 299.99738 * 13 12 11 42 42 H 1.09003 * 109.49509 * 52.78159 * 15 14 13 43 43 H 1.08999 * 109.49263 * 292.70289 * 15 14 13 44 44 H 1.08993 * 109.63162 * 173.53913 * 16 15 14 45 45 H 1.09000 * 109.63187 * 293.92494 * 16 15 14 46 46 H 0.97007 * 119.99366 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.62752 * 170.89056 * 26 17 16 48 48 H 1.08995 * 109.62991 * 291.47112 * 26 17 16 49 49 H 1.09001 * 109.49577 * 67.29663 * 27 14 13 50 50 H 1.09002 * 109.49423 * 307.21375 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.8478 -0.2890 2.4042 6 6 2.4038 -1.1144 3.2541 7 6 2.9850 -2.1537 2.5241 8 6 2.7207 -1.8622 1.1971 9 6 3.1222 -2.6524 0.0223 10 8 2.9069 -2.2293 -1.0975 11 7 3.7282 -3.8448 0.1873 12 6 4.2241 -4.5818 -0.9776 13 6 4.8643 -5.8929 -0.5170 14 7 5.3621 -6.6317 -1.6851 15 6 6.1885 -7.7740 -1.2725 16 6 6.5363 -8.6192 -2.5024 17 7 7.1467 -7.7431 -3.5140 18 6 8.3405 -8.0708 -4.0993 19 1 9.0137 -7.2918 -4.4257 20 6 8.6856 -9.4040 -4.2731 21 7 7.7929 -10.3478 -4.0612 22 14 10.4167 -9.8588 -4.8076 23 1 11.2705 -10.0519 -3.6081 24 1 10.3771 -11.1173 -5.5948 25 1 10.9786 -8.7687 -5.6449 26 6 6.4410 -6.5057 -3.8798 27 6 6.0970 -5.7436 -2.5956 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 2.4124 -1.0100 4.3290 36 1 3.5259 -3.0039 2.9125 37 1 3.8360 -4.2150 1.0773 38 1 4.9670 -3.9789 -1.4997 39 1 3.3945 -4.7990 -1.6504 40 1 4.1217 -6.4960 0.0054 41 1 5.6941 -5.6754 0.1556 42 1 5.6360 -8.3831 -0.5570 43 1 7.1060 -7.4108 -0.8095 44 1 7.2416 -9.4013 -2.2217 45 1 5.6295 -9.0711 -2.9045 46 1 8.0342 -11.2795 -4.1823 47 1 7.0834 -5.8903 -4.5097 48 1 5.5246 -6.7516 -4.4163 49 1 7.0158 -5.4086 -2.1143 50 1 5.4781 -4.8801 -2.8398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713074401.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:22 Heat of formation + Delta-G solvation = 77.295276 kcal Electronic energy + Delta-G solvation = -28859.601746 eV Core-core repulsion = 24924.625633 eV Total energy + Delta-G solvation = -3934.976114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.87323 -39.71837 -38.27142 -36.20504 -35.44915 -34.04540 -31.71139 -31.12765 -30.65262 -30.11746 -28.61167 -27.71346 -26.10800 -24.03753 -23.46772 -23.08325 -22.44937 -21.47933 -21.04071 -19.86791 -19.11943 -18.12589 -16.93385 -16.45968 -16.35778 -15.92031 -15.50637 -15.18689 -15.01108 -14.81933 -14.42507 -14.31367 -14.19844 -13.84259 -13.58780 -13.42606 -13.35914 -13.29834 -13.00122 -12.64458 -12.56138 -12.51667 -11.79463 -11.74660 -11.65655 -11.41725 -11.38885 -11.07177 -10.99725 -10.77592 -10.48588 -10.31815 -10.21358 -10.05309 -9.79692 -9.66143 -9.56348 -9.37649 -9.20987 -8.52332 -7.90460 -6.61647 -5.78567 -3.25739 0.96343 2.02553 2.32833 2.87540 2.93286 3.36465 3.43119 3.44585 4.11465 4.20817 4.42785 4.48884 4.49011 4.57459 4.77173 4.82238 4.85763 5.05819 5.13469 5.18122 5.23471 5.30664 5.38950 5.39904 5.41269 5.45381 5.46064 5.71236 5.73468 5.77601 5.85143 5.87577 5.95413 6.09774 6.12142 6.20502 6.20932 6.32280 6.46498 6.52085 6.67874 6.93006 7.10123 7.23014 7.50690 7.61822 7.69967 7.75521 7.79749 7.84914 8.45847 9.21838 9.82939 10.43247 11.29927 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.027984 B = 0.001908 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.343833 B =14675.202260 C =15075.634469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.124 3.876 3 C -0.158 4.158 4 N -0.247 5.247 5 N -0.274 5.274 6 C -0.007 4.007 7 C -0.190 4.190 8 C -0.039 4.039 9 C 0.592 3.408 10 O -0.538 6.538 11 N -0.710 5.710 12 C 0.116 3.884 13 C 0.044 3.956 14 N -0.527 5.527 15 C 0.036 3.964 16 C 0.179 3.821 17 N -0.596 5.596 18 C -0.252 4.252 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.906 5.906 22 Si 0.905 3.095 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.148 3.852 27 C 0.034 3.966 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.138 0.862 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.186 0.814 36 H 0.160 0.840 37 H 0.403 0.597 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.034 0.966 42 H 0.061 0.939 43 H 0.026 0.974 44 H 0.090 0.910 45 H 0.027 0.973 46 H 0.254 0.746 47 H 0.056 0.944 48 H 0.027 0.973 49 H 0.028 0.972 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.796 18.535 14.323 26.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 C -0.215 4.215 4 N -0.036 5.036 5 N -0.107 5.107 6 C -0.182 4.182 7 C -0.219 4.219 8 C -0.168 4.168 9 C 0.377 3.623 10 O -0.416 6.416 11 N -0.362 5.362 12 C -0.007 4.007 13 C -0.085 4.085 14 N -0.253 5.253 15 C -0.093 4.093 16 C 0.053 3.947 17 N -0.319 5.319 18 C -0.382 4.382 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.550 5.550 22 Si 0.735 3.265 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.204 1.204 26 C 0.022 3.978 27 C -0.095 4.095 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.155 0.845 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.203 0.797 36 H 0.178 0.822 37 H 0.238 0.762 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.052 0.948 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.108 0.892 45 H 0.045 0.955 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.045 0.955 49 H 0.047 0.953 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.948 19.525 12.985 27.283 hybrid contribution 2.101 -0.986 0.873 2.480 sum -11.847 18.539 13.859 26.002 Atomic orbital electron populations 1.22128 0.92830 1.03162 1.03574 1.22163 0.96035 0.94715 0.84627 1.22091 1.01966 0.93863 1.03614 1.46035 1.36681 1.15221 1.05651 1.73133 1.21663 1.25992 0.89872 1.23568 1.01240 0.93442 0.99979 1.22263 1.06300 1.02591 0.90743 1.21408 1.06545 0.93129 0.95687 1.16877 0.77701 0.80983 0.86757 1.90741 1.55484 1.70279 1.25125 1.45631 1.59399 1.19672 1.11453 1.21667 0.99611 0.92214 0.87158 1.22262 0.98833 0.93473 0.93957 1.62039 1.40038 1.09215 1.13976 1.22948 0.93719 0.92282 1.00359 1.20865 0.97189 0.91489 0.85189 1.44077 1.22239 1.21573 1.44030 1.19188 0.93489 0.91038 1.34460 0.91800 1.25172 0.97968 0.96516 0.99917 1.69970 1.32329 0.99525 1.53181 0.86243 0.84219 0.77743 0.78252 1.21484 1.21649 1.20442 1.20993 0.95522 0.88856 0.92471 1.22810 0.95412 0.95298 0.96015 0.91962 0.91274 0.90095 0.84501 0.91962 0.90161 0.91086 0.79748 0.82248 0.76200 0.90543 0.89942 0.90477 0.94796 0.92028 0.95566 0.89226 0.95461 0.93575 0.92580 0.95539 0.95334 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.45 37.15 0.35 -0.87 16 2 C 0.12 1.16 3.55 -67.93 -0.24 0.92 16 3 C -0.16 -1.21 9.30 37.16 0.35 -0.86 16 4 N -0.25 -2.65 3.09 -50.69 -0.16 -2.81 16 5 N -0.27 -2.89 11.52 30.59 0.35 -2.53 16 6 C -0.01 -0.06 12.03 -17.43 -0.21 -0.27 16 7 C -0.19 -1.59 10.50 -38.98 -0.41 -1.99 16 8 C -0.04 -0.42 6.96 -82.06 -0.57 -0.99 16 9 C 0.59 7.00 7.79 -12.64 -0.10 6.90 16 10 O -0.54 -7.84 14.39 5.26 0.08 -7.76 16 11 N -0.71 -7.06 5.54 -61.47 -0.34 -7.40 16 12 C 0.12 1.38 4.93 -4.04 -0.02 1.36 16 13 C 0.04 0.55 5.38 -3.82 -0.02 0.52 16 14 N -0.53 -8.90 4.78 -234.31 -1.12 -10.02 16 15 C 0.04 0.67 5.58 -3.70 -0.02 0.65 16 16 C 0.18 4.25 5.36 -3.60 -0.02 4.23 16 17 N -0.60 -15.03 3.03 -172.02 -0.52 -15.55 16 18 C -0.25 -6.91 9.62 -15.06 -0.14 -7.05 16 19 H 0.06 1.72 7.85 -52.48 -0.41 1.31 16 20 C 0.00 0.08 5.08 -17.43 -0.09 -0.01 16 21 N -0.91 -26.12 11.03 55.49 0.61 -25.51 16 22 Si 0.91 21.60 29.57 -169.99 -5.03 16.58 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.15 3.15 6.69 -3.60 -0.02 3.13 16 27 C 0.03 0.59 5.04 -3.70 -0.02 0.57 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.14 1.48 5.32 -51.93 -0.28 1.20 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.19 0.98 8.06 -52.49 -0.42 0.55 16 36 H 0.16 0.85 7.62 -52.49 -0.40 0.45 16 37 H 0.40 2.90 7.55 -40.82 -0.31 2.59 16 38 H 0.08 0.99 6.18 -51.93 -0.32 0.67 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.03 0.41 8.08 -51.93 -0.42 -0.01 16 42 H 0.06 1.03 8.11 -51.93 -0.42 0.61 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.09 2.36 6.20 -51.93 -0.32 2.04 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.06 1.15 7.95 -51.93 -0.41 0.74 16 48 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.07 1.05 5.73 -51.93 -0.30 0.75 16 LS Contribution 396.15 15.07 5.97 5.97 Total: -1.00 -32.47 396.15 -9.56 -42.03 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -8.22 Total: 0.76 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -1.19 Total: 6.25 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: -1.17 Total: -63.82 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: 0.08 Total: -7.76 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.47 -9.56 -42.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713074401.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.325 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds