Wall clock time and date at job start Tue Mar 31 2020 18:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47396 * 2 1 4 4 N 1.46501 * 109.47113 * 120.00163 * 2 1 3 5 5 N 1.28442 * 125.18945 * 294.93081 * 4 2 1 6 6 C 1.30865 * 110.92893 * 180.27846 * 5 4 2 7 7 C 1.39677 * 107.85911 * 359.71487 * 6 5 4 8 8 C 1.36599 * 125.19198 * 114.71512 * 4 2 1 9 9 C 1.47168 * 126.88412 * 0.02562 * 8 4 2 10 10 O 1.21622 * 119.99619 * 5.00801 * 9 8 4 11 11 N 1.34772 * 119.99800 * 185.01438 * 9 8 4 12 12 C 1.46500 * 119.99664 * 184.89613 * 11 9 8 13 13 C 1.53006 * 109.47016 * 179.97438 * 12 11 9 14 14 N 1.46904 * 109.47061 * 180.02562 * 13 12 11 15 15 C 1.46902 * 110.99962 * 170.00112 * 14 13 12 16 16 C 1.53230 * 109.34021 * 172.74343 * 15 14 13 17 17 N 1.47087 * 108.52305 * 53.82573 * 16 15 14 18 18 C 1.36936 * 120.87785 * 128.79432 * 17 16 15 19 19 H 1.08007 * 119.99596 * 210.64235 * 18 17 16 20 20 C 1.38808 * 120.00518 * 30.64428 * 18 17 16 21 21 N 1.31622 * 119.99536 * 10.03896 * 20 18 17 22 22 Si 1.86801 * 120.00149 * 190.04081 * 20 18 17 23 23 H 1.48501 * 109.46955 * 90.00073 * 22 20 18 24 24 H 1.48500 * 109.47012 * 209.99822 * 22 20 18 25 25 H 1.48493 * 109.47027 * 329.99878 * 22 20 18 26 26 C 1.47075 * 118.23470 * 308.81716 * 17 16 15 27 27 C 1.46895 * 111.00020 * 45.69458 * 14 13 12 28 28 H 1.09005 * 109.47249 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47296 * 300.00044 * 1 2 3 30 30 H 1.09002 * 109.47055 * 59.99980 * 1 2 3 31 31 H 1.09007 * 109.47312 * 239.99863 * 2 1 3 32 32 H 1.09001 * 109.47017 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47035 * 300.00033 * 3 2 1 34 34 H 1.08997 * 109.46934 * 59.99735 * 3 2 1 35 35 H 1.08000 * 126.07259 * 179.67154 * 6 5 4 36 36 H 1.07997 * 127.31816 * 179.97438 * 7 6 5 37 37 H 0.96998 * 120.00549 * 4.89230 * 11 9 8 38 38 H 1.08995 * 109.47238 * 60.00165 * 12 11 9 39 39 H 1.08996 * 109.47624 * 299.99658 * 12 11 9 40 40 H 1.09000 * 109.47385 * 59.99778 * 13 12 11 41 41 H 1.09006 * 109.47182 * 299.99738 * 13 12 11 42 42 H 1.09003 * 109.49509 * 52.78159 * 15 14 13 43 43 H 1.08999 * 109.49263 * 292.70289 * 15 14 13 44 44 H 1.08993 * 109.63162 * 173.53913 * 16 15 14 45 45 H 1.09000 * 109.63187 * 293.92494 * 16 15 14 46 46 H 0.97007 * 119.99366 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.62752 * 170.89056 * 26 17 16 48 48 H 1.08995 * 109.62991 * 291.47112 * 26 17 16 49 49 H 1.09001 * 109.49577 * 67.29663 * 27 14 13 50 50 H 1.09002 * 109.49423 * 307.21375 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.8478 -0.2890 2.4042 6 6 2.4038 -1.1144 3.2541 7 6 2.9850 -2.1537 2.5241 8 6 2.7207 -1.8622 1.1971 9 6 3.1222 -2.6524 0.0223 10 8 2.9069 -2.2293 -1.0975 11 7 3.7282 -3.8448 0.1873 12 6 4.2241 -4.5818 -0.9776 13 6 4.8643 -5.8929 -0.5170 14 7 5.3621 -6.6317 -1.6851 15 6 6.1885 -7.7740 -1.2725 16 6 6.5363 -8.6192 -2.5024 17 7 7.1467 -7.7431 -3.5140 18 6 8.3405 -8.0708 -4.0993 19 1 9.0137 -7.2918 -4.4257 20 6 8.6856 -9.4040 -4.2731 21 7 7.7929 -10.3478 -4.0612 22 14 10.4167 -9.8588 -4.8076 23 1 11.2705 -10.0519 -3.6081 24 1 10.3771 -11.1173 -5.5948 25 1 10.9786 -8.7687 -5.6449 26 6 6.4410 -6.5057 -3.8798 27 6 6.0970 -5.7436 -2.5956 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 2.4124 -1.0100 4.3290 36 1 3.5259 -3.0039 2.9125 37 1 3.8360 -4.2150 1.0773 38 1 4.9670 -3.9789 -1.4997 39 1 3.3945 -4.7990 -1.6504 40 1 4.1217 -6.4960 0.0054 41 1 5.6941 -5.6754 0.1556 42 1 5.6360 -8.3831 -0.5570 43 1 7.1060 -7.4108 -0.8095 44 1 7.2416 -9.4013 -2.2217 45 1 5.6295 -9.0711 -2.9045 46 1 8.0342 -11.2795 -4.1823 47 1 7.0834 -5.8903 -4.5097 48 1 5.5246 -6.7516 -4.4163 49 1 7.0158 -5.4086 -2.1143 50 1 5.4781 -4.8801 -2.8398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713074401.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:21 Heat of formation + Delta-G solvation = 54.499656 kcal Electronic energy + Delta-G solvation = -28860.590239 eV Core-core repulsion = 24924.625633 eV Total energy + Delta-G solvation = -3935.964606 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.57027 -40.67459 -39.69814 -37.07776 -36.61554 -35.42607 -33.33275 -32.27892 -31.63442 -31.30642 -29.95399 -28.31497 -27.70227 -25.41148 -24.60954 -24.08206 -23.76009 -22.64911 -21.89844 -20.90517 -20.55795 -18.93027 -18.70316 -17.50805 -17.15020 -16.92672 -16.79287 -16.43566 -16.01649 -15.80285 -15.76388 -15.47799 -15.31564 -15.05927 -14.93894 -14.90775 -14.66023 -14.09293 -14.05156 -13.97135 -13.19766 -13.15682 -13.14374 -12.98225 -12.94864 -12.62528 -12.45494 -12.43917 -12.35023 -12.29564 -12.01426 -11.90447 -11.79514 -11.51697 -11.43173 -11.08158 -10.59458 -10.42648 -10.09727 -9.98011 -9.27408 -8.62159 -7.86845 -5.37784 0.19997 1.31412 1.47198 1.47464 1.57051 1.66977 2.04051 2.11794 2.50153 3.05403 3.29670 3.47423 3.53139 3.69397 3.78554 3.85251 3.97732 4.05976 4.14340 4.17941 4.29923 4.35358 4.44151 4.55583 4.57916 4.58781 4.60229 4.63849 4.70226 4.71439 4.81053 4.87017 4.87493 4.90823 4.94789 5.05037 5.10126 5.12216 5.19654 5.25669 5.38763 5.58705 5.61264 5.72820 5.78686 6.13505 6.22073 6.33382 6.40408 6.98045 7.11142 7.15134 7.83614 8.39141 9.19264 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.027984 B = 0.001908 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.343833 B =14675.202260 C =15075.634469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.117 3.883 3 C -0.150 4.150 4 N -0.258 5.258 5 N -0.293 5.293 6 C -0.011 4.011 7 C -0.175 4.175 8 C -0.066 4.066 9 C 0.590 3.410 10 O -0.573 6.573 11 N -0.695 5.695 12 C 0.127 3.873 13 C 0.052 3.948 14 N -0.540 5.540 15 C 0.053 3.947 16 C 0.184 3.816 17 N -0.615 5.615 18 C -0.264 4.264 19 H 0.065 0.935 20 C -0.050 4.050 21 N -0.936 5.936 22 Si 0.972 3.028 23 H -0.283 1.283 24 H -0.294 1.294 25 H -0.270 1.270 26 C 0.142 3.858 27 C 0.048 3.952 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.049 0.951 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.216 0.784 36 H 0.192 0.808 37 H 0.419 0.581 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.050 0.950 42 H 0.087 0.913 43 H 0.024 0.976 44 H 0.058 0.942 45 H -0.002 1.002 46 H 0.251 0.749 47 H 0.058 0.942 48 H 0.015 0.985 49 H 0.026 0.974 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.794 19.742 16.406 28.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.018 3.982 3 C -0.208 4.208 4 N -0.047 5.047 5 N -0.126 5.126 6 C -0.185 4.185 7 C -0.204 4.204 8 C -0.194 4.194 9 C 0.377 3.623 10 O -0.453 6.453 11 N -0.347 5.347 12 C 0.003 3.997 13 C -0.076 4.076 14 N -0.265 5.265 15 C -0.076 4.076 16 C 0.058 3.942 17 N -0.340 5.340 18 C -0.395 4.395 19 H 0.082 0.918 20 C -0.246 4.246 21 N -0.582 5.582 22 Si 0.799 3.201 23 H -0.210 1.210 24 H -0.221 1.221 25 H -0.195 1.195 26 C 0.017 3.983 27 C -0.081 4.081 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.137 0.863 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.233 0.767 36 H 0.209 0.791 37 H 0.257 0.743 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.116 0.884 41 H 0.068 0.932 42 H 0.106 0.894 43 H 0.042 0.958 44 H 0.077 0.923 45 H 0.016 0.984 46 H 0.060 0.940 47 H 0.076 0.924 48 H 0.033 0.967 49 H 0.044 0.956 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.954 20.752 15.106 29.216 hybrid contribution 2.040 -1.324 0.247 2.445 sum -11.914 19.428 15.353 27.479 Atomic orbital electron populations 1.22082 0.91773 1.02599 1.04485 1.22214 0.96912 0.95167 0.83934 1.22048 1.01097 0.93109 1.04529 1.46183 1.37127 1.15486 1.05926 1.73119 1.22443 1.26924 0.90123 1.24191 1.00234 0.92863 1.01259 1.22704 1.05077 1.03076 0.89510 1.21478 1.08058 0.93701 0.96153 1.17089 0.77307 0.81234 0.86695 1.90728 1.56938 1.71144 1.26519 1.45400 1.58629 1.18964 1.11754 1.21400 0.98811 0.91885 0.87580 1.22254 0.99623 0.93408 0.92339 1.61918 1.39205 1.09409 1.15997 1.22599 0.94449 0.92675 0.97897 1.20639 0.94872 0.91723 0.86932 1.44366 1.22201 1.22731 1.44660 1.19505 0.94517 0.91296 1.34137 0.91758 1.25941 1.01654 0.96477 1.00502 1.70144 1.34117 0.99503 1.54433 0.85208 0.79815 0.77195 0.77841 1.20958 1.22055 1.19473 1.21136 0.94631 0.87866 0.94693 1.22592 0.95957 0.95307 0.94239 0.93191 0.91306 0.88171 0.86271 0.93172 0.88193 0.91156 0.76730 0.79055 0.74302 0.91518 0.91276 0.88429 0.93223 0.89442 0.95794 0.92346 0.98375 0.94014 0.92394 0.96719 0.95566 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.45 71.98 0.68 -1.57 16 2 C 0.12 2.17 3.55 44.99 0.16 2.33 16 3 C -0.15 -2.22 9.30 71.98 0.67 -1.55 16 4 N -0.26 -5.34 3.09 -314.29 -0.97 -6.31 16 5 N -0.29 -5.77 11.52 -57.14 -0.66 -6.42 16 6 C -0.01 -0.15 12.03 85.18 1.02 0.87 16 7 C -0.17 -2.41 10.50 22.66 0.24 -2.17 16 8 C -0.07 -1.31 6.96 40.79 0.28 -1.03 16 9 C 0.59 13.31 7.79 86.59 0.67 13.98 16 10 O -0.57 -16.68 14.39 -4.10 -0.06 -16.74 16 11 N -0.70 -12.16 5.54 -466.64 -2.58 -14.75 16 12 C 0.13 2.74 4.93 86.38 0.43 3.16 16 13 C 0.05 1.13 5.38 86.30 0.46 1.59 16 14 N -0.54 -17.22 4.78 -895.24 -4.28 -21.50 16 15 C 0.05 1.92 5.58 86.38 0.48 2.40 16 16 C 0.18 8.95 5.36 86.34 0.46 9.41 16 17 N -0.62 -31.55 3.03 -698.15 -2.11 -33.67 16 18 C -0.26 -14.70 9.62 84.03 0.81 -13.89 16 19 H 0.06 3.49 7.85 -2.91 -0.02 3.47 16 20 C -0.05 -2.83 5.08 84.86 0.43 -2.40 16 21 N -0.94 -55.49 11.03 21.65 0.24 -55.25 16 22 Si 0.97 44.90 29.57 68.60 2.03 46.93 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 C 0.14 6.08 6.69 86.35 0.58 6.66 16 27 C 0.05 1.62 5.04 86.39 0.44 2.06 16 28 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.12 2.65 5.32 -2.38 -0.01 2.64 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 35 H 0.22 1.52 8.06 -2.91 -0.02 1.49 16 36 H 0.19 1.20 7.62 -2.91 -0.02 1.17 16 37 H 0.42 4.55 7.55 -92.71 -0.70 3.85 16 38 H 0.07 1.60 6.18 -2.39 -0.01 1.58 16 39 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.05 0.99 8.08 -2.38 -0.02 0.97 16 42 H 0.09 2.72 8.11 -2.39 -0.02 2.70 16 43 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.06 3.18 6.20 -2.39 -0.01 3.16 16 45 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 46 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 47 H 0.06 2.39 7.95 -2.39 -0.02 2.37 16 48 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.09 2.70 5.73 -2.39 -0.01 2.68 16 Total: -1.00 -72.63 396.15 -0.34 -72.97 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.24 Total: 14.87 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 7.82 Total: 19.86 kcal Atomic # 7 Polarization: -127.53 SS G_CDS: -10.37 Total: -137.90 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.06 Total: -16.74 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -72.63 -0.34 -72.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713074401.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.469 kcal (2) G-P(sol) polarization free energy of solvation -72.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds