Wall clock time and date at job start Tue Mar 31 2020 18:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47422 * 2 1 4 4 C 1.53007 * 109.46869 * 239.99960 * 2 1 3 5 5 N 1.46497 * 109.46978 * 120.00474 * 2 1 3 6 6 C 1.34819 * 126.59771 * 75.00026 * 5 2 1 7 7 C 1.36597 * 106.83881 * 180.02562 * 6 5 2 8 8 C 1.47523 * 125.76691 * 179.97438 * 7 6 5 9 9 O 1.21595 * 120.00337 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99857 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00083 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47062 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46967 * 180.02562 * 12 11 10 14 14 H 1.08999 * 110.78170 * 308.24051 * 13 12 11 15 15 C 1.55158 * 110.72145 * 184.99928 * 13 12 11 16 16 C 1.54909 * 101.61642 * 206.15534 * 15 13 12 17 17 N 1.47423 * 104.83351 * 36.99324 * 16 15 13 18 18 C 1.36936 * 125.64594 * 155.90840 * 17 16 15 19 19 H 1.08007 * 120.00033 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00281 * 359.97114 * 18 17 16 21 21 N 1.31616 * 120.00050 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99983 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47406 * 59.99989 * 22 20 18 24 24 H 1.48499 * 109.47231 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47250 * 299.99992 * 22 20 18 26 26 C 1.47016 * 108.70440 * 335.86643 * 17 16 15 27 27 N 1.34403 * 108.45965 * 0.23768 * 7 6 5 28 28 N 1.28762 * 109.52247 * 359.58988 * 27 7 6 29 29 H 1.08994 * 109.46944 * 300.00019 * 1 2 3 30 30 H 1.09000 * 109.47052 * 59.99852 * 1 2 3 31 31 H 1.08996 * 109.47515 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47022 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47128 * 300.00101 * 3 2 1 34 34 H 1.08994 * 109.47076 * 60.00062 * 3 2 1 35 35 H 1.08996 * 109.47187 * 300.00366 * 4 2 1 36 36 H 1.09000 * 109.46816 * 60.00683 * 4 2 1 37 37 H 1.08994 * 109.47015 * 180.02562 * 4 2 1 38 38 H 1.07993 * 126.57902 * 359.97438 * 6 5 2 39 39 H 0.97002 * 120.00212 * 359.97438 * 10 8 7 40 40 H 1.09007 * 109.46821 * 60.00505 * 11 10 8 41 41 H 1.08996 * 109.47722 * 300.00172 * 11 10 8 42 42 H 1.08996 * 109.47404 * 60.00468 * 12 11 10 43 43 H 1.09005 * 109.47092 * 300.00001 * 12 11 10 44 44 H 1.09002 * 111.00366 * 88.06052 * 15 13 12 45 45 H 1.09002 * 111.00429 * 324.25114 * 15 13 12 46 46 H 1.09000 * 110.36449 * 155.82966 * 16 15 13 47 47 H 1.09002 * 110.36579 * 278.03887 * 16 15 13 48 48 H 0.96996 * 120.00056 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.88531 * 120.47268 * 26 17 16 50 50 H 1.08998 * 109.88872 * 241.64988 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 2.0221 -2.0217 1.4104 7 6 2.5627 -2.2216 2.6488 8 6 2.7636 -3.5295 3.3011 9 8 2.4357 -4.5510 2.7289 10 7 3.3107 -3.5920 4.5312 11 6 3.5097 -4.8907 5.1792 12 6 4.1414 -4.6817 6.5570 13 6 4.3499 -6.0381 7.2335 14 1 3.4277 -6.6192 7.2272 15 6 4.8729 -5.8542 8.6827 16 6 5.6323 -7.1848 8.9114 17 7 6.2580 -7.4905 7.6120 18 6 7.3679 -8.2703 7.4244 19 1 7.7501 -8.4349 6.4277 20 6 8.0017 -8.8495 8.5152 21 7 7.5356 -8.6494 9.7297 22 14 9.5161 -9.9127 8.2593 23 1 10.5822 -9.1079 7.6106 24 1 9.9999 -10.4093 9.5725 25 1 9.1698 -11.0668 7.3913 26 6 5.4925 -6.8202 6.5508 27 7 2.8753 -1.0250 3.1749 28 7 2.5711 -0.0945 2.3384 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9562 0.8899 35 1 1.6766 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1299 -0.7217 -1.2491 38 1 1.6653 -2.7836 0.7333 39 1 3.5727 -2.7771 4.9875 40 1 4.1691 -5.5053 4.5663 41 1 2.5482 -5.3912 5.2930 42 1 3.4818 -4.0673 7.1698 43 1 5.1030 -4.1810 6.4437 44 1 4.0467 -5.7500 9.3860 45 1 5.5493 -5.0019 8.7487 46 1 6.3954 -7.0589 9.6795 47 1 4.9367 -7.9748 9.1946 48 1 7.9787 -9.0538 10.4919 49 1 6.1384 -6.1314 6.0063 50 1 5.0781 -7.5616 5.8677 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713731848.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:16 Heat of formation + Delta-G solvation = 71.458935 kcal Electronic energy + Delta-G solvation = -28154.062678 eV Core-core repulsion = 24218.833482 eV Total energy + Delta-G solvation = -3935.229196 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.58593 -39.49499 -37.89862 -37.68079 -35.19038 -33.03472 -32.37039 -31.40369 -30.48431 -28.90333 -28.21876 -28.14627 -26.61319 -24.87362 -24.08511 -23.44718 -22.00447 -21.10675 -20.24572 -20.00139 -19.20872 -17.92162 -16.83243 -16.65498 -16.46182 -15.95951 -15.59063 -15.09281 -14.90507 -14.84890 -14.59322 -14.39626 -14.05342 -13.59074 -13.49864 -13.28747 -13.13408 -12.94590 -12.61688 -12.49138 -12.45238 -12.20416 -12.09886 -11.84853 -11.79652 -11.62384 -11.51855 -11.46754 -11.00903 -10.84885 -10.69639 -10.68479 -10.30997 -10.10982 -9.93112 -9.83359 -9.68383 -9.59822 -9.39655 -9.02359 -8.57493 -6.74468 -5.57935 -2.99024 0.84488 1.49870 1.59060 3.07567 3.18594 3.45354 3.49105 3.50681 3.66641 3.91878 3.94145 4.05383 4.40687 4.55603 4.59426 4.72749 4.75158 4.87980 4.90516 4.94156 5.02753 5.06315 5.08486 5.18768 5.27873 5.37469 5.40752 5.44777 5.54899 5.62944 5.66834 5.71703 5.86893 5.96328 6.06774 6.10334 6.26104 6.31096 6.45234 6.48342 6.68945 6.72391 6.85281 7.06931 7.38093 7.60633 7.70477 7.71350 7.93734 8.11181 8.44609 9.30134 9.91366 10.57173 11.45906 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.001717 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.178593 B =16302.950409 C =16694.790101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.169 3.831 3 C -0.149 4.149 4 C -0.164 4.164 5 N -0.351 5.351 6 C 0.093 3.907 7 C -0.100 4.100 8 C 0.602 3.398 9 O -0.541 6.541 10 N -0.712 5.712 11 C 0.118 3.882 12 C -0.117 4.117 13 C -0.097 4.097 14 H 0.072 0.928 15 C -0.139 4.139 16 C 0.151 3.849 17 N -0.605 5.605 18 C -0.220 4.220 19 H 0.076 0.924 20 C -0.014 4.014 21 N -0.923 5.923 22 Si 0.914 3.086 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.286 1.286 26 C 0.139 3.861 27 N -0.207 5.207 28 N -0.063 5.063 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.201 0.799 39 H 0.408 0.592 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.105 0.895 47 H 0.010 0.990 48 H 0.251 0.749 49 H 0.023 0.977 50 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.299 21.319 -20.759 33.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.087 3.913 3 C -0.207 4.207 4 C -0.222 4.222 5 N -0.138 5.138 6 C -0.064 4.064 7 C -0.240 4.240 8 C 0.385 3.615 9 O -0.417 6.417 10 N -0.362 5.362 11 C -0.005 4.005 12 C -0.155 4.155 13 C -0.117 4.117 14 H 0.091 0.909 15 C -0.177 4.177 16 C 0.026 3.974 17 N -0.331 5.331 18 C -0.349 4.349 19 H 0.094 0.906 20 C -0.209 4.209 21 N -0.572 5.572 22 Si 0.745 3.255 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.213 1.213 26 C 0.013 3.987 27 N -0.081 5.081 28 N -0.042 5.042 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.218 0.782 39 H 0.243 0.757 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.123 0.877 47 H 0.028 0.972 48 H 0.062 0.938 49 H 0.041 0.959 50 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -15.990 21.779 -20.388 33.848 hybrid contribution 0.515 -1.121 -0.535 1.345 sum -15.475 20.658 -20.923 33.226 Atomic orbital electron populations 1.22292 0.91783 1.03758 1.04116 1.21115 0.95238 0.94169 0.80815 1.21999 1.02627 0.92166 1.03880 1.22312 1.02797 1.01332 0.95753 1.50840 1.42139 1.05229 1.15555 1.23250 0.98221 0.86961 0.97947 1.21509 1.12882 0.93800 0.95762 1.16758 0.77656 0.85769 0.81289 1.90820 1.51863 1.34471 1.64545 1.45867 1.62322 1.10942 1.17097 1.21568 1.01258 0.83836 0.93806 1.21801 1.01097 0.98573 0.94048 1.22101 0.98784 0.94264 0.96525 0.90927 1.23042 0.99272 1.01168 0.94266 1.21914 0.95559 0.89607 0.90291 1.44509 1.29991 1.57197 1.01427 1.19051 1.01327 1.21277 0.93218 0.90619 1.24783 0.99694 1.01048 0.95344 1.69796 1.41481 1.48480 0.97483 0.86156 0.82605 0.80172 0.76594 1.21221 1.21608 1.21279 1.21386 0.91411 0.93974 0.91884 1.74648 1.12983 0.97991 1.22435 1.81959 1.15680 1.16962 0.89644 0.91179 0.89564 0.91313 0.91160 0.90078 0.90587 0.91064 0.89315 0.91050 0.78230 0.75722 0.90725 0.91235 0.91488 0.91033 0.92508 0.92177 0.87742 0.97179 0.93785 0.95937 0.96266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.51 8.74 37.16 0.32 -0.19 16 2 C 0.17 0.76 1.25 -131.82 -0.16 0.59 16 3 C -0.15 -0.60 8.11 37.16 0.30 -0.30 16 4 C -0.16 -0.47 8.30 37.16 0.31 -0.16 16 5 N -0.35 -2.82 3.44 -48.36 -0.17 -2.98 16 6 C 0.09 0.82 10.43 -16.83 -0.18 0.65 16 7 C -0.10 -1.17 6.99 -83.55 -0.58 -1.75 16 8 C 0.60 8.15 7.82 -12.48 -0.10 8.06 16 9 O -0.54 -8.71 16.86 5.28 0.09 -8.63 16 10 N -0.71 -8.93 5.55 -61.35 -0.34 -9.27 16 11 C 0.12 1.59 5.56 -4.04 -0.02 1.57 16 12 C -0.12 -1.59 4.73 -26.73 -0.13 -1.72 16 13 C -0.10 -1.68 2.93 -88.75 -0.26 -1.94 16 14 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 15 C -0.14 -2.65 6.53 -24.58 -0.16 -2.81 16 16 C 0.15 3.77 5.89 -2.53 -0.01 3.75 16 17 N -0.61 -16.03 3.39 -170.04 -0.58 -16.60 16 18 C -0.22 -6.34 10.27 -15.06 -0.15 -6.49 16 19 H 0.08 2.11 7.83 -52.48 -0.41 1.69 16 20 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 21 N -0.92 -27.52 10.09 55.49 0.56 -26.96 16 22 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 26 C 0.14 2.99 6.24 -3.04 -0.02 2.97 16 27 N -0.21 -2.52 12.04 32.85 0.40 -2.13 16 28 N -0.06 -0.69 12.91 60.35 0.78 0.09 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.08 0.39 8.06 -51.93 -0.42 -0.03 16 35 H 0.07 0.18 7.44 -51.93 -0.39 -0.21 16 36 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.20 1.24 7.63 -52.49 -0.40 0.84 16 39 H 0.41 4.52 8.16 -40.82 -0.33 4.19 16 40 H 0.07 1.12 7.69 -51.93 -0.40 0.72 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.07 1.00 7.93 -51.93 -0.41 0.59 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.06 1.13 8.05 -51.93 -0.42 0.71 16 46 H 0.10 2.92 5.88 -51.93 -0.31 2.61 16 47 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 49 H 0.02 0.48 7.68 -51.93 -0.40 0.08 16 50 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 404.94 15.07 6.10 6.10 Total: -1.00 -34.65 404.94 -7.64 -42.28 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -8.51 Total: -1.22 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -0.94 Total: 1.74 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.65 Total: -57.86 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.65 -7.64 -42.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713731848.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.742 kcal (2) G-P(sol) polarization free energy of solvation -34.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds