Wall clock time and date at job start Tue Mar 31 2020 18:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47422 * 2 1 4 4 C 1.53007 * 109.46869 * 239.99960 * 2 1 3 5 5 N 1.46497 * 109.46978 * 120.00474 * 2 1 3 6 6 C 1.34819 * 126.59771 * 75.00026 * 5 2 1 7 7 C 1.36597 * 106.83881 * 180.02562 * 6 5 2 8 8 C 1.47523 * 125.76691 * 179.97438 * 7 6 5 9 9 O 1.21595 * 120.00337 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99857 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00083 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47062 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46967 * 180.02562 * 12 11 10 14 14 H 1.08999 * 110.78170 * 308.24051 * 13 12 11 15 15 C 1.55158 * 110.72145 * 184.99928 * 13 12 11 16 16 C 1.54909 * 101.61642 * 206.15534 * 15 13 12 17 17 N 1.47423 * 104.83351 * 36.99324 * 16 15 13 18 18 C 1.36936 * 125.64594 * 155.90840 * 17 16 15 19 19 H 1.08007 * 120.00033 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00281 * 359.97114 * 18 17 16 21 21 N 1.31616 * 120.00050 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99983 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47406 * 59.99989 * 22 20 18 24 24 H 1.48499 * 109.47231 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47250 * 299.99992 * 22 20 18 26 26 C 1.47016 * 108.70440 * 335.86643 * 17 16 15 27 27 N 1.34403 * 108.45965 * 0.23768 * 7 6 5 28 28 N 1.28762 * 109.52247 * 359.58988 * 27 7 6 29 29 H 1.08994 * 109.46944 * 300.00019 * 1 2 3 30 30 H 1.09000 * 109.47052 * 59.99852 * 1 2 3 31 31 H 1.08996 * 109.47515 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47022 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47128 * 300.00101 * 3 2 1 34 34 H 1.08994 * 109.47076 * 60.00062 * 3 2 1 35 35 H 1.08996 * 109.47187 * 300.00366 * 4 2 1 36 36 H 1.09000 * 109.46816 * 60.00683 * 4 2 1 37 37 H 1.08994 * 109.47015 * 180.02562 * 4 2 1 38 38 H 1.07993 * 126.57902 * 359.97438 * 6 5 2 39 39 H 0.97002 * 120.00212 * 359.97438 * 10 8 7 40 40 H 1.09007 * 109.46821 * 60.00505 * 11 10 8 41 41 H 1.08996 * 109.47722 * 300.00172 * 11 10 8 42 42 H 1.08996 * 109.47404 * 60.00468 * 12 11 10 43 43 H 1.09005 * 109.47092 * 300.00001 * 12 11 10 44 44 H 1.09002 * 111.00366 * 88.06052 * 15 13 12 45 45 H 1.09002 * 111.00429 * 324.25114 * 15 13 12 46 46 H 1.09000 * 110.36449 * 155.82966 * 16 15 13 47 47 H 1.09002 * 110.36579 * 278.03887 * 16 15 13 48 48 H 0.96996 * 120.00056 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.88531 * 120.47268 * 26 17 16 50 50 H 1.08998 * 109.88872 * 241.64988 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 2.0221 -2.0217 1.4104 7 6 2.5627 -2.2216 2.6488 8 6 2.7636 -3.5295 3.3011 9 8 2.4357 -4.5510 2.7289 10 7 3.3107 -3.5920 4.5312 11 6 3.5097 -4.8907 5.1792 12 6 4.1414 -4.6817 6.5570 13 6 4.3499 -6.0381 7.2335 14 1 3.4277 -6.6192 7.2272 15 6 4.8729 -5.8542 8.6827 16 6 5.6323 -7.1848 8.9114 17 7 6.2580 -7.4905 7.6120 18 6 7.3679 -8.2703 7.4244 19 1 7.7501 -8.4349 6.4277 20 6 8.0017 -8.8495 8.5152 21 7 7.5356 -8.6494 9.7297 22 14 9.5161 -9.9127 8.2593 23 1 10.5822 -9.1079 7.6106 24 1 9.9999 -10.4093 9.5725 25 1 9.1698 -11.0668 7.3913 26 6 5.4925 -6.8202 6.5508 27 7 2.8753 -1.0250 3.1749 28 7 2.5711 -0.0945 2.3384 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9562 0.8899 35 1 1.6766 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1299 -0.7217 -1.2491 38 1 1.6653 -2.7836 0.7333 39 1 3.5727 -2.7771 4.9875 40 1 4.1691 -5.5053 4.5663 41 1 2.5482 -5.3912 5.2930 42 1 3.4818 -4.0673 7.1698 43 1 5.1030 -4.1810 6.4437 44 1 4.0467 -5.7500 9.3860 45 1 5.5493 -5.0019 8.7487 46 1 6.3954 -7.0589 9.6795 47 1 4.9367 -7.9748 9.1946 48 1 7.9787 -9.0538 10.4919 49 1 6.1384 -6.1314 6.0063 50 1 5.0781 -7.5616 5.8677 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713731848.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:15 Heat of formation + Delta-G solvation = 47.910063 kcal Electronic energy + Delta-G solvation = -28155.083834 eV Core-core repulsion = 24218.833482 eV Total energy + Delta-G solvation = -3936.250352 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.32806 -40.54674 -39.36344 -38.30302 -36.48365 -34.76243 -33.08215 -32.65694 -31.76463 -30.60120 -28.55428 -28.42273 -28.11676 -26.62739 -24.85591 -24.54525 -23.22877 -21.95852 -21.82137 -21.18168 -20.49388 -18.87198 -18.62044 -17.37783 -17.22111 -17.05611 -16.92341 -16.55883 -16.07244 -15.72972 -15.56910 -15.21814 -15.10870 -14.91690 -14.63487 -14.24674 -13.79057 -13.65811 -13.49621 -13.38949 -13.33405 -13.31627 -13.19223 -13.08252 -12.80484 -12.78195 -12.65699 -12.46164 -12.36915 -12.23507 -12.02527 -11.97912 -11.76367 -11.60336 -11.41309 -11.28801 -11.28714 -11.11283 -10.72033 -10.45317 -10.04631 -8.85794 -7.75846 -5.20052 0.13782 0.59843 1.02191 1.45663 1.49347 1.55769 2.10276 2.21464 2.50657 3.15259 3.23909 3.32771 3.64239 3.70681 3.75769 3.76607 3.78887 3.91838 3.95192 4.18911 4.19455 4.33756 4.38148 4.51977 4.56916 4.59926 4.66064 4.67272 4.71221 4.74996 4.77768 4.79138 4.81327 4.91593 5.05348 5.07466 5.12827 5.18964 5.20245 5.26197 5.27580 5.39431 5.45472 5.53238 5.53844 5.71127 5.85413 6.33978 6.40531 6.89629 7.11413 7.13102 7.81432 8.45548 9.25648 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.001717 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.178593 B =16302.950409 C =16694.790101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.159 3.841 3 C -0.148 4.148 4 C -0.162 4.162 5 N -0.339 5.339 6 C 0.106 3.894 7 C -0.123 4.123 8 C 0.602 3.398 9 O -0.571 6.571 10 N -0.706 5.706 11 C 0.125 3.875 12 C -0.102 4.102 13 C -0.083 4.083 14 H 0.082 0.918 15 C -0.123 4.123 16 C 0.149 3.851 17 N -0.629 5.629 18 C -0.241 4.241 19 H 0.077 0.923 20 C -0.069 4.069 21 N -0.949 5.949 22 Si 0.981 3.019 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.133 3.867 27 N -0.226 5.226 28 N -0.082 5.082 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.109 0.891 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.059 0.941 38 H 0.227 0.773 39 H 0.416 0.584 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.071 0.929 47 H -0.016 1.016 48 H 0.247 0.753 49 H 0.025 0.975 50 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.530 22.808 -22.834 36.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.078 3.922 3 C -0.205 4.205 4 C -0.220 4.220 5 N -0.124 5.124 6 C -0.052 4.052 7 C -0.263 4.263 8 C 0.387 3.613 9 O -0.450 6.450 10 N -0.356 5.356 11 C 0.001 3.999 12 C -0.140 4.140 13 C -0.102 4.102 14 H 0.101 0.899 15 C -0.161 4.161 16 C 0.025 3.975 17 N -0.355 5.355 18 C -0.371 4.371 19 H 0.095 0.905 20 C -0.262 4.262 21 N -0.598 5.598 22 Si 0.809 3.191 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.008 3.992 27 N -0.099 5.099 28 N -0.062 5.062 29 H 0.074 0.926 30 H 0.131 0.869 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.128 0.872 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.133 0.867 37 H 0.078 0.922 38 H 0.243 0.757 39 H 0.252 0.748 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.002 0.998 48 H 0.056 0.944 49 H 0.043 0.957 50 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -17.232 23.329 -22.482 36.697 hybrid contribution 0.855 -1.545 0.010 1.766 sum -16.377 21.784 -22.472 35.324 Atomic orbital electron populations 1.22311 0.90365 1.04159 1.04770 1.21596 0.96271 0.94310 0.80028 1.22024 1.01787 0.92089 1.04633 1.22354 1.02083 1.01892 0.95638 1.51190 1.40588 1.05080 1.15578 1.23628 0.96661 0.87699 0.97248 1.21411 1.14867 0.93012 0.96992 1.16974 0.77000 0.86104 0.81226 1.90795 1.53333 1.35628 1.65285 1.45774 1.61948 1.10895 1.16983 1.21395 1.00901 0.84104 0.93455 1.21641 1.01817 0.96466 0.94072 1.22010 0.97324 0.95812 0.95053 0.89943 1.22887 0.99559 0.97661 0.96038 1.21752 0.94611 0.91999 0.89185 1.44853 1.30075 1.57306 1.03270 1.19428 1.02385 1.21798 0.93439 0.90512 1.25654 1.02736 1.02626 0.95164 1.70060 1.42569 1.49225 0.97983 0.85114 0.79100 0.78499 0.76385 1.20265 1.21706 1.20593 1.21588 0.92400 0.94003 0.91160 1.74613 1.13729 0.98244 1.23311 1.81883 1.16514 1.17166 0.90657 0.92562 0.86871 0.91048 0.92469 0.87205 0.91954 0.90421 0.86718 0.92206 0.75657 0.74781 0.92523 0.91051 0.88673 0.91049 0.89584 0.91610 0.91140 0.99773 0.94350 0.95714 0.96733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.60 8.74 71.98 0.63 0.03 16 2 C 0.16 1.09 1.25 3.60 0.00 1.09 16 3 C -0.15 -0.95 8.11 71.98 0.58 -0.36 16 4 C -0.16 -0.49 8.30 71.98 0.60 0.11 16 5 N -0.34 -5.00 3.44 -306.90 -1.06 -6.06 16 6 C 0.11 1.73 10.43 83.85 0.87 2.60 16 7 C -0.12 -2.79 6.99 40.82 0.29 -2.51 16 8 C 0.60 15.95 7.82 86.69 0.68 16.63 16 9 O -0.57 -18.17 16.86 -4.01 -0.07 -18.24 16 10 N -0.71 -16.94 5.55 -466.27 -2.59 -19.53 16 11 C 0.12 3.20 5.56 86.38 0.48 3.68 16 12 C -0.10 -2.54 4.73 30.60 0.14 -2.39 16 13 C -0.08 -2.72 2.93 -9.58 -0.03 -2.75 16 14 H 0.08 2.59 8.14 -2.39 -0.02 2.58 16 15 C -0.12 -4.52 6.53 31.99 0.21 -4.31 16 16 C 0.15 7.61 5.89 86.86 0.51 8.12 16 17 N -0.63 -33.92 3.39 -691.88 -2.35 -36.27 16 18 C -0.24 -14.16 10.27 84.03 0.86 -13.30 16 19 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 20 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 21 N -0.95 -58.15 10.09 21.65 0.22 -57.93 16 22 Si 0.98 47.12 29.55 68.60 2.03 49.15 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 25 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 26 C 0.13 5.72 6.24 86.75 0.54 6.26 16 27 N -0.23 -5.42 12.04 -49.99 -0.60 -6.02 16 28 N -0.08 -1.77 12.91 37.02 0.48 -1.30 16 29 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.11 0.05 8.14 -2.39 -0.02 0.04 16 34 H 0.06 0.58 8.06 -2.39 -0.02 0.56 16 35 H 0.08 0.16 7.44 -2.39 -0.02 0.14 16 36 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.23 2.30 7.63 -2.91 -0.02 2.28 16 39 H 0.42 8.68 8.16 -92.71 -0.76 7.92 16 40 H 0.06 1.67 7.69 -2.38 -0.02 1.65 16 41 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.07 1.83 7.93 -2.38 -0.02 1.81 16 44 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 45 H 0.07 2.35 8.05 -2.39 -0.02 2.33 16 46 H 0.07 4.08 5.88 -2.39 -0.01 4.06 16 47 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 48 H 0.25 14.67 8.31 -92.71 -0.77 13.89 16 49 H 0.02 1.05 7.68 -2.39 -0.02 1.03 16 50 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -77.85 404.94 3.07 -74.78 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.17 Total: 12.14 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 6.84 Total: 9.28 kcal Atomic # 7 Polarization: -121.21 SS G_CDS: -5.90 Total: -127.11 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.07 Total: -18.24 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -77.85 3.07 -74.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713731848.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.687 kcal (2) G-P(sol) polarization free energy of solvation -77.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds