Wall clock time and date at job start Tue Mar 31 2020 18:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46888 * 2 1 4 4 C 1.52999 * 109.47300 * 239.99939 * 2 1 3 5 5 N 1.46501 * 109.47435 * 120.00128 * 2 1 3 6 6 C 1.34814 * 126.59366 * 74.99674 * 5 2 1 7 7 C 1.36598 * 106.83828 * 179.97438 * 6 5 2 8 8 C 1.47523 * 125.76774 * 179.97438 * 7 6 5 9 9 O 1.21588 * 120.00393 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99790 * 179.97438 * 8 7 6 11 11 C 1.46494 * 119.99883 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47153 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47357 * 179.97438 * 12 11 10 14 14 H 1.09008 * 110.88141 * 57.43250 * 13 12 11 15 15 C 1.55154 * 111.03901 * 181.33347 * 13 12 11 16 16 C 1.54325 * 102.94303 * 153.59308 * 15 13 12 17 17 N 1.47290 * 107.30599 * 337.81911 * 16 15 13 18 18 C 1.36938 * 125.79079 * 178.92205 * 17 16 15 19 19 H 1.08005 * 119.99558 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00146 * 0.02562 * 18 17 16 21 21 N 1.31620 * 120.00086 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99779 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47268 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47204 * 119.99715 * 22 20 18 25 25 H 1.48508 * 109.46889 * 239.99519 * 22 20 18 26 26 C 1.47425 * 108.55742 * 358.92448 * 17 16 15 27 27 N 1.34401 * 108.45736 * 0.24387 * 7 6 5 28 28 N 1.28756 * 109.52492 * 359.58927 * 27 7 6 29 29 H 1.08999 * 109.46967 * 299.99896 * 1 2 3 30 30 H 1.08994 * 109.47307 * 60.00088 * 1 2 3 31 31 H 1.09000 * 109.47042 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46685 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47074 * 300.00054 * 3 2 1 34 34 H 1.08999 * 109.47232 * 60.00266 * 3 2 1 35 35 H 1.09005 * 109.47343 * 300.00457 * 4 2 1 36 36 H 1.09011 * 109.46700 * 59.99711 * 4 2 1 37 37 H 1.08997 * 109.47375 * 179.97438 * 4 2 1 38 38 H 1.07999 * 126.58068 * 359.97438 * 6 5 2 39 39 H 0.97001 * 119.99978 * 0.02562 * 10 8 7 40 40 H 1.09003 * 109.47419 * 60.00332 * 11 10 8 41 41 H 1.09000 * 109.47726 * 300.00454 * 11 10 8 42 42 H 1.09005 * 109.46769 * 60.00435 * 12 11 10 43 43 H 1.08992 * 109.47516 * 300.00618 * 12 11 10 44 44 H 1.09002 * 110.72290 * 271.95994 * 15 13 12 45 45 H 1.08994 * 110.71922 * 35.05463 * 15 13 12 46 46 H 1.09004 * 109.88239 * 97.22707 * 16 15 13 47 47 H 1.08995 * 109.88239 * 218.23629 * 16 15 13 48 48 H 0.96999 * 120.00175 * 180.02562 * 21 20 18 49 49 H 1.09002 * 110.36696 * 265.26054 * 26 17 16 50 50 H 1.08995 * 110.36608 * 143.04891 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0184 -0.6906 1.1961 6 6 2.0222 -2.0216 1.4104 7 6 2.5640 -2.2216 2.6483 8 6 2.7653 -3.5294 3.3005 9 8 2.4375 -4.5510 2.7284 10 7 3.3136 -3.5920 4.5301 11 6 3.5141 -4.8907 5.1775 12 6 4.1481 -4.6819 6.5542 13 6 4.3569 -6.0383 7.2307 14 1 4.9766 -6.6889 6.6135 15 6 4.9687 -5.8665 8.6461 16 6 4.4829 -7.1294 9.3882 17 7 3.2883 -7.6211 8.6807 18 6 2.5654 -8.7367 9.0094 19 1 1.7013 -9.0123 8.4229 20 6 2.9431 -9.5132 10.0962 21 7 3.9964 -9.1776 10.8105 22 14 1.9573 -11.0354 10.5440 23 1 0.8292 -11.1927 9.5911 24 1 2.8347 -12.2315 10.4748 25 1 1.4239 -10.8918 11.9226 26 6 3.0001 -6.7104 7.5577 27 7 2.8772 -1.0249 3.1741 28 7 2.5723 -0.0945 2.3380 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 1.6653 -2.7836 0.7334 39 1 3.5755 -2.7770 4.9864 40 1 4.1732 -5.5048 4.5638 41 1 2.5530 -5.3920 5.2919 42 1 3.4893 -4.0677 7.1682 43 1 5.1092 -4.1809 6.4394 44 1 6.0573 -5.8436 8.5956 45 1 4.5872 -4.9644 9.1242 46 1 5.2623 -7.8914 9.3726 47 1 4.2296 -6.8796 10.4185 48 1 4.2606 -9.7204 11.5697 49 1 2.2674 -5.9605 7.8559 50 1 2.6379 -7.2724 6.6969 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713731849.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:20 Heat of formation + Delta-G solvation = 70.106976 kcal Electronic energy + Delta-G solvation = -28149.931862 eV Core-core repulsion = 24214.644040 eV Total energy + Delta-G solvation = -3935.287822 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.58944 -39.49306 -37.89820 -37.67260 -35.18544 -33.01044 -32.37187 -31.40672 -30.48772 -28.92268 -28.22092 -28.14768 -26.59963 -24.87369 -24.08716 -23.45371 -22.04189 -21.10759 -20.23651 -19.91699 -19.31924 -17.92732 -16.81678 -16.65698 -16.45965 -15.93406 -15.56528 -15.02857 -14.92912 -14.84700 -14.54947 -14.41468 -14.03612 -13.60071 -13.58510 -13.29972 -13.13156 -12.95437 -12.62114 -12.48891 -12.38881 -12.21205 -12.08660 -11.89118 -11.79257 -11.76933 -11.51496 -11.44308 -11.01609 -10.80891 -10.72416 -10.68772 -10.28584 -10.05778 -9.89242 -9.78190 -9.69205 -9.59899 -9.55074 -9.01779 -8.53291 -6.73902 -5.63854 -2.96426 0.84320 1.49707 1.58776 3.07527 3.18740 3.44783 3.50243 3.52823 3.66410 3.91672 3.93982 4.05184 4.40711 4.56702 4.59395 4.72462 4.75256 4.88072 4.90506 4.93756 5.00291 5.05873 5.07881 5.19385 5.27731 5.36377 5.40906 5.44629 5.55386 5.62406 5.69462 5.74932 5.83101 5.95248 6.06510 6.10497 6.21064 6.29578 6.44513 6.47970 6.63853 6.68095 6.81862 7.06304 7.38038 7.64796 7.71054 7.71556 7.90695 8.11526 8.34029 9.30089 9.90896 10.58052 11.48300 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.027925 B = 0.001716 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.454387 B =16316.169572 C =16895.396749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.169 3.831 3 C -0.149 4.149 4 C -0.163 4.163 5 N -0.351 5.351 6 C 0.093 3.907 7 C -0.100 4.100 8 C 0.601 3.399 9 O -0.539 6.539 10 N -0.712 5.712 11 C 0.118 3.882 12 C -0.117 4.117 13 C -0.100 4.100 14 H 0.076 0.924 15 C -0.138 4.138 16 C 0.176 3.824 17 N -0.607 5.607 18 C -0.224 4.224 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.923 5.923 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.139 3.861 27 N -0.207 5.207 28 N -0.063 5.063 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.201 0.799 39 H 0.407 0.593 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.045 0.955 47 H 0.041 0.959 48 H 0.250 0.750 49 H 0.017 0.983 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 22.967 -25.448 34.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.087 3.913 3 C -0.207 4.207 4 C -0.222 4.222 5 N -0.138 5.138 6 C -0.064 4.064 7 C -0.239 4.239 8 C 0.385 3.615 9 O -0.416 6.416 10 N -0.363 5.363 11 C -0.005 4.005 12 C -0.155 4.155 13 C -0.120 4.120 14 H 0.094 0.906 15 C -0.177 4.177 16 C 0.052 3.948 17 N -0.334 5.334 18 C -0.352 4.352 19 H 0.096 0.904 20 C -0.207 4.207 21 N -0.571 5.571 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.013 3.987 27 N -0.081 5.081 28 N -0.043 5.043 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.218 0.782 39 H 0.242 0.758 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.035 0.965 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.926 23.381 -25.035 34.380 hybrid contribution -0.681 -1.316 -0.015 1.482 sum -3.607 22.065 -25.050 33.577 Atomic orbital electron populations 1.22296 0.91753 1.03807 1.04138 1.21116 0.95273 0.94149 0.80798 1.21998 1.02573 0.92185 1.03900 1.22311 1.02731 1.01358 0.95769 1.50838 1.42129 1.05232 1.15560 1.23255 0.98170 0.86960 0.97986 1.21513 1.12891 0.93800 0.95743 1.16758 0.77652 0.85767 0.81326 1.90824 1.51717 1.34466 1.64576 1.45868 1.62361 1.10921 1.17119 1.21557 1.01816 0.83734 0.93374 1.21747 1.00701 0.98686 0.94361 1.22265 0.98972 0.94423 0.96323 0.90585 1.22895 0.99186 1.00300 0.95282 1.21168 0.89077 0.90542 0.94035 1.44557 1.30929 1.27148 1.30719 1.19129 1.06917 0.99501 1.09699 0.90420 1.24801 0.98317 0.99410 0.98204 1.69981 1.26729 1.39735 1.20675 0.86051 0.79060 0.82788 0.77941 1.20521 1.21822 1.21847 1.21614 0.93451 0.92440 0.91208 1.74641 1.13090 0.97989 1.22367 1.81954 1.15678 1.16965 0.89679 0.91150 0.89561 0.91282 0.91194 0.90075 0.90581 0.91049 0.89322 0.91091 0.78221 0.75770 0.91172 0.90638 0.91188 0.91532 0.92360 0.92538 0.93720 0.94117 0.93921 0.96488 0.94437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.53 8.74 37.16 0.32 -0.21 16 2 C 0.17 0.75 1.25 -131.82 -0.16 0.58 16 3 C -0.15 -0.58 8.11 37.16 0.30 -0.28 16 4 C -0.16 -0.44 8.30 37.16 0.31 -0.13 16 5 N -0.35 -2.79 3.44 -48.35 -0.17 -2.95 16 6 C 0.09 0.82 10.43 -16.83 -0.18 0.64 16 7 C -0.10 -1.16 6.99 -83.55 -0.58 -1.74 16 8 C 0.60 8.10 7.82 -12.47 -0.10 8.00 16 9 O -0.54 -8.71 16.86 5.29 0.09 -8.62 16 10 N -0.71 -8.81 5.55 -61.35 -0.34 -9.15 16 11 C 0.12 1.58 5.52 -4.04 -0.02 1.56 16 12 C -0.12 -1.54 4.85 -26.73 -0.13 -1.67 16 13 C -0.10 -1.72 3.07 -88.47 -0.27 -1.99 16 14 H 0.08 1.33 8.14 -51.92 -0.42 0.90 16 15 C -0.14 -2.59 6.42 -24.90 -0.16 -2.75 16 16 C 0.18 4.40 5.38 -2.92 -0.02 4.38 16 17 N -0.61 -16.03 3.40 -169.86 -0.58 -16.61 16 18 C -0.22 -6.46 10.28 -15.06 -0.15 -6.61 16 19 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 20 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 21 N -0.92 -27.86 10.33 55.49 0.57 -27.28 16 22 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 C 0.14 2.94 5.89 -2.53 -0.01 2.92 16 27 N -0.21 -2.49 12.04 32.85 0.40 -2.10 16 28 N -0.06 -0.68 12.91 60.35 0.78 0.10 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.08 0.38 8.06 -51.93 -0.42 -0.04 16 35 H 0.07 0.17 7.44 -51.93 -0.39 -0.22 16 36 H 0.09 0.07 8.14 -51.92 -0.42 -0.35 16 37 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.20 1.23 7.63 -52.49 -0.40 0.83 16 39 H 0.41 4.40 8.16 -40.82 -0.33 4.07 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.08 1.12 7.45 -51.93 -0.39 0.74 16 42 H 0.07 0.92 8.10 -51.93 -0.42 0.49 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 46 H 0.04 1.23 7.39 -51.93 -0.38 0.84 16 47 H 0.04 1.12 7.51 -51.93 -0.39 0.73 16 48 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.02 0.36 8.00 -51.93 -0.42 -0.05 16 50 H 0.04 0.78 8.06 -51.93 -0.42 0.37 16 LS Contribution 405.51 15.07 6.11 6.11 Total: -1.00 -35.08 405.51 -7.68 -42.76 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -8.57 Total: -2.22 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -0.95 Total: 2.27 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 0.66 Total: -58.00 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.62 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.08 -7.68 -42.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713731849.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.870 kcal (2) G-P(sol) polarization free energy of solvation -35.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds