Wall clock time and date at job start Tue Mar 31 2020 18:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46888 * 2 1 4 4 C 1.52999 * 109.47300 * 239.99939 * 2 1 3 5 5 N 1.46501 * 109.47435 * 120.00128 * 2 1 3 6 6 C 1.34814 * 126.59366 * 74.99674 * 5 2 1 7 7 C 1.36598 * 106.83828 * 179.97438 * 6 5 2 8 8 C 1.47523 * 125.76774 * 179.97438 * 7 6 5 9 9 O 1.21588 * 120.00393 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99790 * 179.97438 * 8 7 6 11 11 C 1.46494 * 119.99883 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47153 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47357 * 179.97438 * 12 11 10 14 14 H 1.09008 * 110.88141 * 57.43250 * 13 12 11 15 15 C 1.55154 * 111.03901 * 181.33347 * 13 12 11 16 16 C 1.54325 * 102.94303 * 153.59308 * 15 13 12 17 17 N 1.47290 * 107.30599 * 337.81911 * 16 15 13 18 18 C 1.36938 * 125.79079 * 178.92205 * 17 16 15 19 19 H 1.08005 * 119.99558 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00146 * 0.02562 * 18 17 16 21 21 N 1.31620 * 120.00086 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99779 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47268 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47204 * 119.99715 * 22 20 18 25 25 H 1.48508 * 109.46889 * 239.99519 * 22 20 18 26 26 C 1.47425 * 108.55742 * 358.92448 * 17 16 15 27 27 N 1.34401 * 108.45736 * 0.24387 * 7 6 5 28 28 N 1.28756 * 109.52492 * 359.58927 * 27 7 6 29 29 H 1.08999 * 109.46967 * 299.99896 * 1 2 3 30 30 H 1.08994 * 109.47307 * 60.00088 * 1 2 3 31 31 H 1.09000 * 109.47042 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46685 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47074 * 300.00054 * 3 2 1 34 34 H 1.08999 * 109.47232 * 60.00266 * 3 2 1 35 35 H 1.09005 * 109.47343 * 300.00457 * 4 2 1 36 36 H 1.09011 * 109.46700 * 59.99711 * 4 2 1 37 37 H 1.08997 * 109.47375 * 179.97438 * 4 2 1 38 38 H 1.07999 * 126.58068 * 359.97438 * 6 5 2 39 39 H 0.97001 * 119.99978 * 0.02562 * 10 8 7 40 40 H 1.09003 * 109.47419 * 60.00332 * 11 10 8 41 41 H 1.09000 * 109.47726 * 300.00454 * 11 10 8 42 42 H 1.09005 * 109.46769 * 60.00435 * 12 11 10 43 43 H 1.08992 * 109.47516 * 300.00618 * 12 11 10 44 44 H 1.09002 * 110.72290 * 271.95994 * 15 13 12 45 45 H 1.08994 * 110.71922 * 35.05463 * 15 13 12 46 46 H 1.09004 * 109.88239 * 97.22707 * 16 15 13 47 47 H 1.08995 * 109.88239 * 218.23629 * 16 15 13 48 48 H 0.96999 * 120.00175 * 180.02562 * 21 20 18 49 49 H 1.09002 * 110.36696 * 265.26054 * 26 17 16 50 50 H 1.08995 * 110.36608 * 143.04891 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0184 -0.6906 1.1961 6 6 2.0222 -2.0216 1.4104 7 6 2.5640 -2.2216 2.6483 8 6 2.7653 -3.5294 3.3005 9 8 2.4375 -4.5510 2.7284 10 7 3.3136 -3.5920 4.5301 11 6 3.5141 -4.8907 5.1775 12 6 4.1481 -4.6819 6.5542 13 6 4.3569 -6.0383 7.2307 14 1 4.9766 -6.6889 6.6135 15 6 4.9687 -5.8665 8.6461 16 6 4.4829 -7.1294 9.3882 17 7 3.2883 -7.6211 8.6807 18 6 2.5654 -8.7367 9.0094 19 1 1.7013 -9.0123 8.4229 20 6 2.9431 -9.5132 10.0962 21 7 3.9964 -9.1776 10.8105 22 14 1.9573 -11.0354 10.5440 23 1 0.8292 -11.1927 9.5911 24 1 2.8347 -12.2315 10.4748 25 1 1.4239 -10.8918 11.9226 26 6 3.0001 -6.7104 7.5577 27 7 2.8772 -1.0249 3.1741 28 7 2.5723 -0.0945 2.3380 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 1.6653 -2.7836 0.7334 39 1 3.5755 -2.7770 4.9864 40 1 4.1732 -5.5048 4.5638 41 1 2.5530 -5.3920 5.2919 42 1 3.4893 -4.0677 7.1682 43 1 5.1092 -4.1809 6.4394 44 1 6.0573 -5.8436 8.5956 45 1 4.5872 -4.9644 9.1242 46 1 5.2623 -7.8914 9.3726 47 1 4.2296 -6.8796 10.4185 48 1 4.2606 -9.7204 11.5697 49 1 2.2674 -5.9605 7.8559 50 1 2.6379 -7.2724 6.6969 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713731849.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:19 Heat of formation + Delta-G solvation = 45.978237 kcal Electronic energy + Delta-G solvation = -28150.978163 eV Core-core repulsion = 24214.644040 eV Total energy + Delta-G solvation = -3936.334122 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.32332 -40.53790 -39.34814 -38.29857 -36.46989 -34.74561 -33.07886 -32.65703 -31.75888 -30.62417 -28.54625 -28.42269 -28.09737 -26.63303 -24.85733 -24.54750 -23.26200 -21.90223 -21.77830 -21.22103 -20.54227 -18.84559 -18.61599 -17.36791 -17.19969 -17.01928 -16.87466 -16.52555 -16.08112 -15.72920 -15.55762 -15.22142 -15.15197 -14.91429 -14.73820 -14.07730 -13.82959 -13.68176 -13.63876 -13.38922 -13.32563 -13.29025 -13.18771 -13.06108 -12.80810 -12.77908 -12.65868 -12.45785 -12.36187 -12.22168 -11.97668 -11.96708 -11.77769 -11.60764 -11.37653 -11.30549 -11.28363 -11.15946 -10.70792 -10.44618 -10.03410 -8.87194 -7.84356 -5.19255 0.14252 0.60603 1.02535 1.44826 1.46166 1.56745 2.11056 2.22248 2.50064 3.15866 3.24494 3.33667 3.64445 3.67335 3.72080 3.76953 3.81978 3.92635 4.00795 4.17025 4.19246 4.35058 4.39963 4.52610 4.57154 4.60049 4.64207 4.67548 4.71173 4.75306 4.78875 4.79483 4.81683 4.92981 5.02165 5.07690 5.14630 5.18326 5.19015 5.26738 5.27551 5.40381 5.46370 5.53554 5.54950 5.71951 5.80704 6.21913 6.41783 6.90418 7.11866 7.12792 7.79944 8.45158 9.26541 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.027925 B = 0.001716 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.454387 B =16316.169572 C =16895.396749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.159 3.841 3 C -0.148 4.148 4 C -0.161 4.161 5 N -0.339 5.339 6 C 0.105 3.895 7 C -0.122 4.122 8 C 0.601 3.399 9 O -0.572 6.572 10 N -0.705 5.705 11 C 0.124 3.876 12 C -0.101 4.101 13 C -0.084 4.084 14 H 0.076 0.924 15 C -0.123 4.123 16 C 0.181 3.819 17 N -0.631 5.631 18 C -0.241 4.241 19 H 0.080 0.920 20 C -0.070 4.070 21 N -0.952 5.952 22 Si 0.979 3.021 23 H -0.266 1.266 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.133 3.867 27 N -0.225 5.225 28 N -0.082 5.082 29 H 0.054 0.946 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.114 0.886 37 H 0.061 0.939 38 H 0.226 0.774 39 H 0.416 0.584 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.008 0.992 47 H 0.003 0.997 48 H 0.246 0.754 49 H 0.023 0.977 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.711 24.500 -27.948 37.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.078 3.922 3 C -0.205 4.205 4 C -0.219 4.219 5 N -0.124 5.124 6 C -0.053 4.053 7 C -0.262 4.262 8 C 0.386 3.614 9 O -0.451 6.451 10 N -0.355 5.355 11 C 0.000 4.000 12 C -0.139 4.139 13 C -0.104 4.104 14 H 0.094 0.906 15 C -0.161 4.161 16 C 0.056 3.944 17 N -0.358 5.358 18 C -0.370 4.370 19 H 0.098 0.902 20 C -0.263 4.263 21 N -0.602 5.602 22 Si 0.807 3.193 23 H -0.191 1.191 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.008 3.992 27 N -0.098 5.098 28 N -0.062 5.062 29 H 0.073 0.927 30 H 0.131 0.869 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.132 0.868 37 H 0.080 0.920 38 H 0.243 0.757 39 H 0.253 0.747 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.113 0.887 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.027 0.973 47 H 0.021 0.979 48 H 0.055 0.945 49 H 0.041 0.959 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.573 24.982 -27.561 37.370 hybrid contribution -0.537 -1.727 0.671 1.929 sum -4.110 23.255 -26.890 35.788 Atomic orbital electron populations 1.22319 0.90553 1.04101 1.04736 1.21592 0.96149 0.94375 0.80077 1.22022 1.01858 0.92020 1.04594 1.22350 1.02161 1.01845 0.95556 1.51184 1.40602 1.05067 1.15591 1.23626 0.96642 0.87704 0.97314 1.21405 1.14871 0.93016 0.96944 1.16980 0.76981 0.86088 0.81300 1.90799 1.53225 1.35677 1.65383 1.45761 1.61970 1.10882 1.16915 1.21385 1.00857 0.84123 0.93586 1.21594 1.02403 0.96252 0.93649 1.22139 0.96111 0.96305 0.95807 0.90594 1.22762 1.00689 0.97521 0.95170 1.20979 0.87861 0.92340 0.93246 1.44909 1.31124 1.27394 1.32330 1.19520 1.07245 1.00518 1.09762 0.90207 1.25678 0.99618 1.02599 0.98404 1.70206 1.28234 1.40771 1.20956 0.84997 0.77887 0.78835 0.77554 1.19060 1.21790 1.21841 1.21826 0.95944 0.91905 0.89516 1.74605 1.13814 0.98201 1.23196 1.81879 1.16486 1.17161 0.90666 0.92658 0.86859 0.91145 0.92303 0.87230 0.92036 0.90475 0.86759 0.92019 0.75723 0.74719 0.91447 0.92382 0.90405 0.88715 0.89935 0.90743 0.97342 0.97852 0.94466 0.95944 0.94594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.67 8.74 71.98 0.63 -0.04 16 2 C 0.16 1.06 1.25 3.60 0.00 1.07 16 3 C -0.15 -0.89 8.11 71.98 0.58 -0.31 16 4 C -0.16 -0.42 8.30 71.98 0.60 0.18 16 5 N -0.34 -4.93 3.44 -306.89 -1.06 -5.98 16 6 C 0.11 1.70 10.43 83.85 0.87 2.58 16 7 C -0.12 -2.75 6.99 40.82 0.29 -2.46 16 8 C 0.60 15.80 7.82 86.69 0.68 16.48 16 9 O -0.57 -18.24 16.86 -3.99 -0.07 -18.31 16 10 N -0.70 -16.55 5.55 -466.29 -2.59 -19.14 16 11 C 0.12 3.14 5.52 86.38 0.48 3.62 16 12 C -0.10 -2.40 4.85 30.59 0.15 -2.25 16 13 C -0.08 -2.74 3.07 -9.40 -0.03 -2.77 16 14 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 15 C -0.12 -4.44 6.42 31.78 0.20 -4.23 16 16 C 0.18 9.24 5.38 86.68 0.47 9.71 16 17 N -0.63 -33.95 3.40 -691.30 -2.35 -36.31 16 18 C -0.24 -14.19 10.28 84.03 0.86 -13.32 16 19 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 20 C -0.07 -4.18 5.49 84.86 0.47 -3.71 16 21 N -0.95 -59.42 10.33 21.65 0.22 -59.19 16 22 Si 0.98 47.52 29.55 68.60 2.03 49.55 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 26 C 0.13 5.58 5.89 86.85 0.51 6.09 16 27 N -0.22 -5.29 12.04 -49.99 -0.60 -5.90 16 28 N -0.08 -1.74 12.91 37.02 0.48 -1.26 16 29 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.06 0.57 8.06 -2.39 -0.02 0.55 16 35 H 0.08 0.14 7.44 -2.38 -0.02 0.12 16 36 H 0.11 -0.26 8.14 -2.38 -0.02 -0.28 16 37 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.23 2.30 7.63 -2.91 -0.02 2.28 16 39 H 0.42 8.32 8.16 -92.71 -0.76 7.56 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.06 1.69 7.45 -2.39 -0.02 1.67 16 42 H 0.08 1.79 8.10 -2.38 -0.02 1.77 16 43 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 45 H 0.07 2.43 8.04 -2.39 -0.02 2.42 16 46 H 0.01 0.48 7.39 -2.38 -0.02 0.46 16 47 H 0.00 0.19 7.51 -2.39 -0.02 0.17 16 48 H 0.25 14.85 8.31 -92.71 -0.77 14.07 16 49 H 0.02 0.93 8.00 -2.39 -0.02 0.91 16 50 H 0.04 1.50 8.06 -2.39 -0.02 1.48 16 Total: -1.00 -79.39 405.51 2.99 -76.40 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.17 Total: 9.50 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 6.76 Total: 10.64 kcal Atomic # 7 Polarization: -121.88 SS G_CDS: -5.90 Total: -127.78 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.07 Total: -18.31 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -79.39 2.99 -76.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713731849.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.377 kcal (2) G-P(sol) polarization free energy of solvation -79.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds